LOC110535893


Basic Information

Item Value
gene id LOC110535893
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 51429480 ~ 51434945 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475334.2
actacttcaaggtctcagagcaagtgacgtcactgattgaaacgctatttagcgcccacgctaactaagctagccgtttcacatccgttacatgtaCACCAAGGTAATTATTTGTCATGCCTCATTGTAGGAGGATCAGCAGCTTAGCAgagtcaggcagccagggaagaccagtctgtgacagagcctatcggatttcctgttatcaagctattgcctgatctcccagacGACGTTATTAGCCTTTTCcttgcctttttggaccccctgtgtatgacattctgcctgcccctggacccagctacctgcttcCTCCTGTGATCCTTCACAAATAAACAGCTgatgcgccctgcgcttgaaacca
>TU1128124
GTGTACGTCTTGCGCTCTTTCACATAGTTGTGAAAGGAACAGAAACTGGCTAATCTTTAGTTGACTGACGTAGCCGTCAAGcctatcggatttcctgttatcaagctattgcctgatctcccagacGACGTTATTAGCCTTTTCcttgcctttttggaccccctgtgtatgacattctgcctgcccctggacccagct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475334.2 False 364 mRNA 0.49 2 51429480 51432055
TU1128124 True 198 lncRNA 0.48 2 51429541 51434945

Neighbor

gene id symbol gene type direction distance location
mmp11a LOC106579968 coding downstream 5687 51410669 ~ 51423793 (-)
LOC118937364 LOC106585457 coding downstream 59268 51364250 ~ 51370212 (-)
fam102aa LOC106579973 coding downstream 124975 51281663 ~ 51304505 (-)
LOC110535883 LOC106579975 coding downstream 183558 51224185 ~ 51245922 (-)
sh3glb2a LOC106579977 coding downstream 205358 51206885 ~ 51224122 (-)
upb1 bup1 coding upstream 28383 51460438 ~ 51471151 (-)
LOC110535896 LOC106579963 coding upstream 42486 51474541 ~ 51481565 (-)
adora2aa adora2a coding upstream 50127 51482182 ~ 51489995 (-)
specc1la specc1l coding upstream 59990 51492045 ~ 51523279 (-)
LOC110535900 LOC106579959 coding upstream 91425 51523480 ~ 51573073 (-)
G991118 NA non-coding downstream 1916 51427214 ~ 51427564 (-)
G991108 NA non-coding downstream 19064 51410136 ~ 51410416 (-)
G991099 LOC106579966 non-coding downstream 31370 51396105 ~ 51398110 (-)
G991025 LOC106579971 non-coding downstream 77343 51348508 ~ 51352137 (-)
G991150 NA non-coding upstream 23042 51455097 ~ 51455537 (-)
G991205 NA non-coding upstream 160628 51592683 ~ 51597596 (-)
G991214 NA non-coding upstream 169798 51601853 ~ 51604820 (-)
G991215 NA non-coding upstream 172773 51604828 ~ 51605256 (-)
G991216 NA non-coding upstream 173296 51605351 ~ 51605591 (-)
G990411 NA other downstream 385172 51040780 ~ 51044308 (-)
G989880 LOC106579995 other downstream 805375 50623430 ~ 50624105 (-)
G989343 NA other downstream 1297307 50131329 ~ 50132173 (-)
G989341 NA other downstream 1307664 50120576 ~ 50121816 (-)
G991349 NA other upstream 410011 51842066 ~ 51842522 (-)
ct030 LOC106579885 other upstream 3690455 55122507 ~ 55124484 (-)
adgra2 LOC106579839 other upstream 5258296 56690351 ~ 56787685 (-)
G997269 NA other upstream 5506983 56939038 ~ 56941535 (-)

Expression


Co-expression Network