upb1 (bup1)


Basic Information

Item Value
gene id upb1
gene name bup1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 51460438 ~ 51471151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165197.2
gcacaaggCTTGGACAGTATACAGAAGTAGCCTCAAAATGTCGGGGTCTGCGTTTGAATCTCTGGAGAAGACATTGGAGAAACATATTCCAGATGAGGAATTGAAAGAAGTTAAACGAATCTTGTTTGGAAAAGAAACCAAGAAGTTGCTTCTACCAGCATGTGCAGTGGAGATAGCTTTGGAGAGGGACTTTGAGCTTCAGGGGTACATGTTTGAAGCTTCCACGGAGCAGCTCAGGACCCCGAGGCCTGTCCGGGTGGGCCTCATTCAAAACCGCATCGTCTTGCCCACTGATGCCCCTGTCCTGGATCAGATCACAGCGCTCCACAAAAGGATTGGTGAGATGGTGGATGTGGCGGCCATGTGTGGGGTCAACATTGTCTGCTTTCAGGAGGCCTGGACTATGCCCTTTGCTTTCTGTACCCGGGAGAAAGAACCGTGGACAGAATTTGCTGAGTCTGCAGAAGAAGGATACACTACCCGCTTCTGCcaagagCTGGCAAAGAAATACAATATGGTAGTGATATCGCCCATTTTGGAGCGAGAGGAGGTACACAACATTCTGTGGAACACAGCGGTAGTGGTCTCTAACTCGGGCAGTGTGCTGGGTAAAACCAGGAAGAATCACATTCCCCGAGTGGGAGACTTCAACGAGTCCACATATTACATGGAGGGAAACACTGGCCACAAAGTGTTTCAGACCCAGTTTGGAAAGATTGCTGTGAACATCTGCTATGGGCGCCATCACCCTCTCAACTGGTTCATGTACAGCATGAATGGAGCAGAGATCATCTTCAACCCCTCTGCAACTGTTGGAGGACTCAGTGAGCCCATGTGGTCAATCGAGGCTAGGAATGCAGCAATAGCAAACCACTGCTTCACCTGTGGAATCAACCGTGTTGGGACAGAGCACTTTAACAATGAGTTCACCTCTGGGGATGGAAAAAAAGCTCACCAAGATTTCGGGTACTTCTATGGGTCAAGCTATGTGGCTGCTCCGGATGGCAGCCGCTCACCAGGCCTGTCCAGAACCCGTGACGGACTCCTTGTGACTGAAATGGACCTCAACCTGACCAGGCAAATCAGTGACAAATGGAGTTTTAAGATGACTGGGAGGTATGAAGAGTATGCAGAGGAGCTCACCAGGGCCACCAAGCAGGACTTCAAACCCAACATTATCAAGGAGTAGAAGATCCATGCGTTCTGAAGGGACCTCTACATGGAGACGGGCTGCACTGTAGACATGAAGTCACTGTTGAGGCAGACATGTCTAGTGCCATCAAGAGTATGAACAGACCAATTAAAGCCAGCCATTTGTTTAAATTATTTTATTGATTACAGTACGTAAttggaattgtaaaaaaaaaaaagtttgccaTTTTAATAGATAACAAATACACAACCATGAATAAATTGTCTTCCCACCCAATTAGTAGATTGGGAAAATATCTTATGTTAAAATATTATTTAAATAATACATAATTATGGCTGGTACAAATACCATAGTGCAATATCATCCATGAtaccaaaatgtaaaaataaatgttgaatgagaattaaataaaggtgtcatTCT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006807 nitrogen compound metabolic process biological_process
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function

KEGG:

id description
K01431 UPB1, pydC; beta-ureidopropionase

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165197.2 True 1576 mRNA 0.45 9 51460438 51471151

Neighbor

gene id symbol gene type direction distance location
LOC110535893 NA coding downstream 28383 51429480 ~ 51434945 (-)
mmp11a LOC106579968 coding downstream 36645 51410669 ~ 51423793 (-)
LOC118937364 LOC106585457 coding downstream 90226 51364250 ~ 51370212 (-)
fam102aa LOC106579973 coding downstream 155933 51281663 ~ 51304505 (-)
LOC110535883 LOC106579975 coding downstream 214516 51224185 ~ 51245922 (-)
LOC110535896 LOC106579963 coding upstream 3390 51474541 ~ 51481565 (-)
adora2aa adora2a coding upstream 11031 51482182 ~ 51489995 (-)
specc1la specc1l coding upstream 20894 51492045 ~ 51523279 (-)
LOC110535900 LOC106579959 coding upstream 52329 51523480 ~ 51573073 (-)
apc7 apc7 coding upstream 195570 51666721 ~ 51667745 (-)
G991150 NA non-coding downstream 4901 51455097 ~ 51455537 (-)
G991118 NA non-coding downstream 32874 51427214 ~ 51427564 (-)
G991108 NA non-coding downstream 50022 51410136 ~ 51410416 (-)
G991099 LOC106579966 non-coding downstream 62328 51396105 ~ 51398110 (-)
G991205 NA non-coding upstream 121532 51592683 ~ 51597596 (-)
G991214 NA non-coding upstream 130702 51601853 ~ 51604820 (-)
G991215 NA non-coding upstream 133677 51604828 ~ 51605256 (-)
G991216 NA non-coding upstream 134200 51605351 ~ 51605591 (-)
G991187 atp2a2 non-coding upstream 187214 51658365 ~ 51661797 (-)
G990411 NA other downstream 416130 51040780 ~ 51044308 (-)
G989880 LOC106579995 other downstream 836333 50623430 ~ 50624105 (-)
G989343 NA other downstream 1328265 50131329 ~ 50132173 (-)
G989341 NA other downstream 1338622 50120576 ~ 50121816 (-)
G991349 NA other upstream 370915 51842066 ~ 51842522 (-)
ct030 LOC106579885 other upstream 3651359 55122507 ~ 55124484 (-)
adgra2 LOC106579839 other upstream 5219200 56690351 ~ 56787685 (-)
G997269 NA other upstream 5467887 56939038 ~ 56941535 (-)

Expression


Co-expression Network