LOC110535896 (LOC106579963)



Basic Information


Item Value
gene id LOC110535896
gene name LOC106579963
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 51474541 ~ 51481565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021621258.2
CTTCCattgaaaggagaggagagacgagggggAGTCAGATGGGTTATCAACCAGGGGGAATGTGCTTTCGATGTGTGTATAAGACAAACATTTTTGCTGGCTCTGCAACAGTTCAAAACTGTTTACAGGTCTGGCTTTAAAATGCCAAATGGATAACGTATCCTGTCAACTGTTGGTTTACTCAGAGCAACTGCAGAAGCCATTCACAATGGCCTCCTCAGTGCAGAAGCTTAGTCACTAAGTATGACAGTAGTCAAcaacatagatttttttttttttttttaaactattgtgGCACTGTGTGCTAAACCCAAACTCATCACTCCTTTGGCTCTATGGAAGAGAGGGCCAAACAGAACTGTTTAACCTGAACTGCAGGGTGATAGACTTCATCCACAGTTTGAAGGAGAGATGTTATCTGGATTCTCAAGACCATGTGGACCTGATGGACAGGACAGGGGAGCTGGTGAACCTGAGTGTAAAGGAGAAGAGCATGGAGCAGGCCAGCAGTCTGATGAAGGAGAGGCACAGCTACGTTCTCATACGCATCTGCAGAGGTGATGGGACTGAAGGGCAGAAGTACGTGCCACTCCTAAATGACCTTGACAAGAGCCATCCCGAGTTAGCAGAGGTCCTAAAGAAGCTGTCCAACCCATGTAAGGAGCAGAAAAAAAAGGGTGGTCCCTCAAGGAAAGGTTCTGTCAATCAGATCCGGCGCAAGCCCACTGCTGGAAACAAGAAGAGCCATCCTGGAAGACTTAAAGATatgaagaaaggagaggaggaaggctgaaAAAGATGGTGATGGACATGCATGTATAGAAAGCTATGGACCACATACATGTAATTGTGTTGGTGCTGTGGTTCTCTTCACTCCAATAATTTTTTACTTTGGTAAATTTAGGTTGATAAATTAACATTCCCACATATACCttgtcatgatgttggcctgtgggtaaggtttatgacccccccaccataaatacctttctcccttccctctctcttgactctacagaggga
>XM_021621260.2
CTTCCattgaaaggagaggagagacgagggggAGTCAGATGGGTTATCAACCAGGGGGAATGTGCTTTCGATGTGTGTATAAGACAAACATTTTTGCTGGCTCTGCAACAGTTCAAAACTGTTTACAGGTCTGGCTTTAAAATGCCAAATGGATAACGTATCCTGTCAACTGTTGGTTTACTCAGAGCAACTGCAGAAGCCATTCACAATGGCCTCCTCAGTGCAGAAGCTTAGTCACTAAGTATGACAGTAGTCAAcaacatagatttttttttttttttttaaactattgtgGCACTGTGTGCTAAACCCAAACTCATCACTCCTTTGGCTCTATGGAAGAGAGGGCCAAACAGAACTGTTTAACCTGAACTGCAGGGTGATAGACTTCATCCACAGTTTGAAGGAGAGATGTTATCTGGATTCTCAAGATGTACTCTACAGACCATGTGGACCTGATGGACAGGACAGGGGAGCTGGTGAACCTGAGTGTAAAGGAGAAGAGCATGGAGCAGGCCAGCAGTCTGATGAAGGAGAGGCACAGCTACGTTCTCATACGCATCTGCAGAGGTGATGGGACTGAAGGGCAGAAGTACGTGCCACTCCTAAATGACCTTGACAAGAGCCATCCCGAGTTAGCAGAGGTCCTAAAGAAGCTGTCCAACCCATGTAAGGAGCAGAAAAAAAAGGGTGGTCCCTCAAGGAAAGGTTCTGTCAATCAGATCCGGCGCAAGCCCACTGCTGGAAACAAGAAGAGCCATCCTGGAAGACTTAAAGATatgaagaaaggagaggaggaaggctgaaAAAGATGGTGATGGACATGCATGTATAGAAAGCTATGGACCACATACATGTAATTGTGTTGGTGCTGTGGTTCTCTTCACTCCAATAATTTTTTACTTTGGTAAATTTAGGTTGATAAATTAACATTCCCACATATACCttgtcatgatgttggcctgtgggtaaggtttatgacccccccaccataaatacctttctcccttccctctctcttgactctacagaggga

Function


NR:

description
uncharacterized protein C22orf15 homolog isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021621258.2 False 1023 mRNA 0.45 5 51474541 51481565
XM_021621260.2 True 1036 mRNA 0.45 5 51474541 51481565

Neighbor


gene id symbol gene type direction distance location
upb1 bup1 coding downstream 3390 51460438 ~ 51471151 (-)
LOC110535893 NA coding downstream 42486 51429480 ~ 51434945 (-)
mmp11a LOC106579968 coding downstream 50748 51410669 ~ 51423793 (-)
LOC118937364 LOC106585457 coding downstream 104329 51364250 ~ 51370212 (-)
fam102aa LOC106579973 coding downstream 170036 51281663 ~ 51304505 (-)
adora2aa adora2a coding upstream 617 51482182 ~ 51489995 (-)
specc1la specc1l coding upstream 10480 51492045 ~ 51523279 (-)
LOC110535900 LOC106579959 coding upstream 41915 51523480 ~ 51573073 (-)
apc7 apc7 coding upstream 185156 51666721 ~ 51667745 (-)
pptc7a pptc7 coding upstream 214089 51694687 ~ 51704504 (-)
G991150 NA non-coding downstream 19004 51455097 ~ 51455537 (-)
G991118 NA non-coding downstream 46977 51427214 ~ 51427564 (-)
G991108 NA non-coding downstream 64125 51410136 ~ 51410416 (-)
G991099 LOC106579966 non-coding downstream 76431 51396105 ~ 51398110 (-)
G991205 NA non-coding upstream 111118 51592683 ~ 51597596 (-)
G991214 NA non-coding upstream 120288 51601853 ~ 51604820 (-)
G991215 NA non-coding upstream 123263 51604828 ~ 51605256 (-)
G991216 NA non-coding upstream 123786 51605351 ~ 51605591 (-)
G991187 atp2a2 non-coding upstream 176800 51658365 ~ 51661797 (-)
G990411 NA other downstream 430233 51040780 ~ 51044308 (-)
G989880 LOC106579995 other downstream 850436 50623430 ~ 50624105 (-)
G989343 NA other downstream 1342368 50131329 ~ 50132173 (-)
G989341 NA other downstream 1352725 50120576 ~ 50121816 (-)
G991349 NA other upstream 360501 51842066 ~ 51842522 (-)
ct030 LOC106579885 other upstream 3640945 55122507 ~ 55124484 (-)
adgra2 LOC106579839 other upstream 5208786 56690351 ~ 56787685 (-)
G997269 NA other upstream 5457473 56939038 ~ 56941535 (-)

Expression



Co-expression Network