LOC110535938 (sf3a1)


Basic Information

Item Value
gene id LOC110535938
gene name sf3a1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 52605772 ~ 52620232 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621332.2
CTACCTGCTAGAAGAACTGCAAATCCCACAATGCTTAGATGTGTTTCCGGAAGTAAAAGACCTCCATTCCAGGCAGGTCAACGACAGAAAAACGCACTCACTTTTTACGTTTTAACAGATAACCCAATCAAATAATTGACGCAGCCATGCCGCCTGGGCCTGTACAACTTGTTCAGCTTGAGCCCAACAGCAAGGCAGATGAGCCTACAGGGGAAACCCCAGCAACGAAACCCATAGTTGGGATCATCTATCCACCTCCTGAGGTCCGAAACATCGTTGATAAGACTGCCAGCTTTGTTGCCAGGAATGGACCAGAGTTCGAAGCAAGGATCCGTCAGAATGAGATCAACAACCCAAAGTTCAACTTCCTGAACCCTAATGACCCCTACCATGCTTACTATCGCCACAAGGTCAATGAATTCAAGGAGGGCAAGGGCCAGGAGCCGTCTGCGGCCGTGCCAAAGGTCATGCAGCAGCAGGCCCTGCTGAACTCGCAGCAGCTTCCTCAAAAGGTGCAGGCCCAGGTGATTCATGAGACAGTGGTGCCAAAGGAACCTCCGCCTGAGTTTGAGTTCATTGCGGACCCTCCTTCAATCTCGGCATTCGACCTGGATGTTGTCAAGCTGACCGCCCAGTTTGTGGCTCGCAACGGGCGCCAGTTCCTCACACAGCTCATGCAGAAAGAACAGCGAAATTACCAGTTTGACTTCCTGCGACCTCAACACAGCCTCTTCAACTACTTCACCAAGCTGGTGGAGCAGTACACTAAGATTCTGATCCCTCCCAAGGGACTGCTCATGAAGCTGAAAAGAGAGGCTGAGAACCCCAGGGAGGTGCTGGACCAGGTGAGGTACCGCGTTGAGTGGGCGAAATTTCAGGAGCGTgaaaggaagaaagaggaggaggagcgggAGAAAGAGCGTGTGTCCTACGCCCAAATTGACTGGCATGACTTTGTAGTGGTGGAGACCGTGGACTTCCAACCTAATGAGCAAGGCCACTTTCCCCCACCCACCACACCTGAGGAGCTGGGAGCTCGCATCCTGACCCAGGAGCGTTATGACAAGtttggagagagtgaggaggtggagatggaggttGAAAGTGAGGACGAGGATGACGTTGAGCAGGAGGATCGGGATGATGGGCGTCCCACACAGCCTGATCAGGACACACAGCTGCAAGACATGGATGAGGGTTCTGATGAAGAGGATGATGGCAAGGCACCATTGCCCCCAGACAACCCCATGCCACCCCCACTGCCCCCTACTCCAGACCAGGTCATTATCCGCAAGGACTACGACCCCAAAGCCTCCAAGCCCCAGCCTCCAGCCAAGACTCTGGATGAGTTCCTCATCTCTCCCATCACCGGTGAGAGGATCCAAGCCAGTAAGATGCAGGAGCACATGCGCATCGGACTATTGGATCCCCGCTGGCTGGAGCAGAGGGACCGCGGCATCAGAGAGAGGCAAATAGAGGATGAGGTTTACGCCCCTGGCATGGACATTGAGAGCAGCCTAAAACAGCTGGCTGAGAGGCGTACTGATATCTTTGGTGTGGAGGAGACCGCCATCGGTAAGAAGATTGGAGAAGAGGAGATCCAGAAGCCTGAGGAGAAGGTGACCTGGGATGGGCACTCTGGCAGCATGGCGCGTACTCAGCAGGCAGCACAGGCCAACATCACCCTACAAGAGCAGATTGAGGCCATTCACAAGGCCAAGGGACTGGTGCAGGAGGATGAAAGCAAAGAGAAGATTGGGCCAAGCAAGCCTGAGctttaccatcatcatcatcaatcacCCCTCATCTCCTCTGCCCCCCTTctgcccaaacccagccctccaATGAACACGATGGCACGGGCCCCTCCTTCCATGCTGCCCCCTGTACGCACCACTCTCCTGTCAGCTGTGCCTGTGATTCCACGGCCCCCCATGGCCCCTGTGCAGATGCGCCTAGCCCCAGGGCAGGTTCTAACACCCATGCCCCCCATGATGCATGCTCCCCGCATCAACGTGGTGCCCATGCCCCAACCACCTCACATGATGGCCCCCAGACCACCACCCATGGTGGTCCCAACTGCATTTGTCCCTGCCCCTCCAGTCCCGCAACCCCCCCGCCCCCGCCCTGACCCGCAGCCACCTTCCCAGCCACCTCCACCCCATAATGATGAGCCTGCCAGCAAGAAGATGAAGACAGAGGACAACCTCATGCCAGAGGAGGAGTTCCTCCGTAGATACAAGggTTCAGTGTCCGTCACAGTGCAAGTTCCCAACATGCAGGACAAGACTGAATGGAAGCTAAGTGGACAAGCGCTCAATTTCACTATCCCACTCACAGATCAGGTGTCTGTTATTAAAGTGAAAATCCATGAAGCCACTGGAATGCCAGCCGGAAAGCAAAAGCTGCAGTATGAGGGAATTTTCATCAAAGATTCCAACTCGCTGGCCTACTACAACATAAACAACGGTTCAGTCATACACCTGGcactgaaggagagaggtgggagaaagaAGTGAGGTGTACATCCCCTCAACAGGTTTCTCTCTGCCATACACACAGCCAGTTTGGGACATTTGTCTGAGCAGATCTTTCTAAATGATTTATATCCTTTGTTGGTCATAGCAATTTTAAAGAATGCTTAAGGCATAAATAAACCATAAATAAAAACTATAACTTGCTACAGTTTCTTATGTTAAGCGTTGATTATTTTCTAAAGGTTAATTGTATTGTTTAAGGGGAtagttgttcatgttgctgttttGGTCAGTGTATTTGTTACCCATGTCCAGAGCTTACAGCCCATGTCAATCATCAAATAAAGTAATAAAATGCCA
>XM_021621333.2
TGTCACTTAATTTCCACAGCTACCTGCTAGAAGAACTGCAAATCCCACAATGCTTAGATGTGTTTCCGGAAGTAAAAGACCTCCATTCCAGGCAGGTCAACGACAGAAAAACGCACTCACTTTTTACGTTTTAACAGATAACCCAATCAAATAATTGACGCAGCCATGCCGCCTGGGCCTGTACAACTTGTTCAGCTTGAGCCCAACAGCAAGGCAGATGAGCCTACAGGGGAAACCCCAGCAACGAAACCCATAGTTGGGATCATCTATCCACCTCCTGAGGTCCGAAACATCGTTGATAAGACTGCCAGCTTTGTTGCCAGGAATGGACCAGAGTTCGAAGCAAGGATCCGTCAGAATGAGATCAACAACCCAAAGTTCAACTTCCTGAACCCTAATGACCCCTACCATGCTTACTATCGCCACAAGGTCAATGAATTCAAGGAGGGCAAGGGCCAGGAGCCGTCTGCGGCCGTGCCAAAGGTCATGCAGCAGCAGGCCCTGCTGAACTCGCAGCAGCTTCCTCAAAAGGCCCAGGTGATTCATGAGACAGTGGTGCCAAAGGAACCTCCGCCTGAGTTTGAGTTCATTGCGGACCCTCCTTCAATCTCGGCATTCGACCTGGATGTTGTCAAGCTGACCGCCCAGTTTGTGGCTCGCAACGGGCGCCAGTTCCTCACACAGCTCATGCAGAAAGAACAGCGAAATTACCAGTTTGACTTCCTGCGACCTCAACACAGCCTCTTCAACTACTTCACCAAGCTGGTGGAGCAGTACACTAAGATTCTGATCCCTCCCAAGGGACTGCTCATGAAGCTGAAAAGAGAGGCTGAGAACCCCAGGGAGGTGCTGGACCAGGTGAGGTACCGCGTTGAGTGGGCGAAATTTCAGGAGCGTgaaaggaagaaagaggaggaggagcgggAGAAAGAGCGTGTGTCCTACGCCCAAATTGACTGGCATGACTTTGTAGTGGTGGAGACCGTGGACTTCCAACCTAATGAGCAAGGCCACTTTCCCCCACCCACCACACCTGAGGAGCTGGGAGCTCGCATCCTGACCCAGGAGCGTTATGACAAGtttggagagagtgaggaggtggagatggaggttGAAAGTGAGGACGAGGATGACGTTGAGCAGGAGGATCGGGATGATGGGCGTCCCACACAGCCTGATCAGGACACACAGCTGCAAGACATGGATGAGGGTTCTGATGAAGAGGATGATGGCAAGGCACCATTGCCCCCAGACAACCCCATGCCACCCCCACTGCCCCCTACTCCAGACCAGGTCATTATCCGCAAGGACTACGACCCCAAAGCCTCCAAGCCCCAGCCTCCAGCCAAGACTCTGGATGAGTTCCTCATCTCTCCCATCACCGGTGAGAGGATCCAAGCCAGTAAGATGCAGGAGCACATGCGCATCGGACTATTGGATCCCCGCTGGCTGGAGCAGAGGGACCGCGGCATCAGAGAGAGGCAAATAGAGGATGAGGTTTACGCCCCTGGCATGGACATTGAGAGCAGCCTAAAACAGCTGGCTGAGAGGCGTACTGATATCTTTGGTGTGGAGGAGACCGCCATCGGTAAGAAGATTGGAGAAGAGGAGATCCAGAAGCCTGAGGAGAAGGTGACCTGGGATGGGCACTCTGGCAGCATGGCGCGTACTCAGCAGGCAGCACAGGCCAACATCACCCTACAAGAGCAGATTGAGGCCATTCACAAGGCCAAGGGACTGGTGCAGGAGGATGAAAGCAAAGAGAAGATTGGGCCAAGCAAGCCTGAGctttaccatcatcatcatcaatcacCCCTCATCTCCTCTGCCCCCCTTctgcccaaacccagccctccaATGAACACGATGGCACGGGCCCCTCCTTCCATGCTGCCCCCTGTACGCACCACTCTCCTGTCAGCTGTGCCTGTGATTCCACGGCCCCCCATGGCCCCTGTGCAGATGCGCCTAGCCCCAGGGCAGGTTCTAACACCCATGCCCCCCATGATGCATGCTCCCCGCATCAACGTGGTGCCCATGCCCCAACCACCTCACATGATGGCCCCCAGACCACCACCCATGGTGGTCCCAACTGCATTTGTCCCTGCCCCTCCAGTCCCGCAACCCCCCCGCCCCCGCCCTGACCCGCAGCCACCTTCCCAGCCACCTCCACCCCATAATGATGAGCCTGCCAGCAAGAAGATGAAGACAGAGGACAACCTCATGCCAGAGGAGGAGTTCCTCCGTAGATACAAGggTTCAGTGTCCGTCACAGTGCAAGTTCCCAACATGCAGGACAAGACTGAATGGAAGCTAAGTGGACAAGCGCTCAATTTCACTATCCCACTCACAGATCAGGTGTCTGTTATTAAAGTGAAAATCCATGAAGCCACTGGAATGCCAGCCGGAAAGCAAAAGCTGCAGTATGAGGGAATTTTCATCAAAGATTCCAACTCGCTGGCCTACTACAACATAAACAACGGTTCAGTCATACACCTGGcactgaaggagagaggtgggagaaagaAGTGAGGTGTACATCCCCTCAACAGGTTTCTCTCTGCCATACACACAGCCAGTTTGGGACATTTGTCTGAGCAGATCTTTCTAAATGATTTATATCCTTTGTTGGTCATAGCAATTTTAAAGAATGCTTAAGGCATAAATAAACCATAAATAAAAACTATAACTTGCTACAGTTTCTTATGTTAAGCGTTGATTATTTTCTAAAGGTTAATTGTATTGTTTAAGGGGAtagttgttcatgttgctgttttGGTCAGTGTATTTGTTACCCATGTCCAGAGCTTACAGCCCATGTCAATCATCAAATAAAGTAATAAAATGCCA

Function

symbol description
sf3a1 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2 snRNP; U2-type prespliceosome; and catalytic step 2 spliceosome. Orthologous to human SF3A1 (splicing factor 3a subunit 1).

NR:

description
splicing factor 3A subunit 1-like isoform X2

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12825 SF3A1, SAP114; splicing factor 3A subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621332.2 False 2837 mRNA 0.52 16 52605772 52620213
XM_021621333.2 True 2850 mRNA 0.52 16 52605772 52620232
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Neighbor

gene id symbol gene type direction distance location
LOC110535939 LOC106579927 coding downstream 497 52595107 ~ 52605275 (-)
aplnra LOC106579928 coding downstream 61178 52542640 ~ 52544594 (-)
LOC110535936 LOC106579929 coding downstream 86088 52514978 ~ 52519684 (-)
LOC110535934 LOC106579930 coding downstream 101455 52494150 ~ 52504317 (-)
LOC110535930 LOC106579932 coding downstream 127645 52456437 ~ 52478127 (-)
LOC110535941 LOC106579925 coding upstream 9741 52629973 ~ 52637138 (-)
dgcr6 dgcr6 coding upstream 19944 52640176 ~ 52643058 (-)
LOC110535943 LOC106579922 coding upstream 90843 52711075 ~ 52789529 (-)
LOC110535944 ccd92 coding upstream 170683 52790915 ~ 52807772 (-)
LOC110535946 ncor2 coding upstream 332989 52953221 ~ 53081845 (-)
G992014 NA non-coding downstream 10977 52594230 ~ 52594795 (-)
G992009 NA non-coding downstream 16072 52589445 ~ 52589700 (-)
G991864 NA non-coding downstream 56577 52548826 ~ 52549195 (-)
G991859 NA non-coding downstream 64233 52541322 ~ 52541539 (-)
G991845 NA non-coding downstream 92336 52513196 ~ 52513436 (-)
G992021 NA non-coding upstream 23046 52643278 ~ 52644164 (-)
G992058 NA non-coding upstream 84539 52704771 ~ 52707403 (-)
G992062 NA non-coding upstream 99621 52719853 ~ 52720187 (-)
G992140 NA non-coding upstream 199543 52819775 ~ 52819977 (-)
G992155 NA non-coding upstream 211940 52832172 ~ 52832406 (-)
G991349 NA other downstream 763250 51842066 ~ 51842522 (-)
specc1la specc1l other downstream 1082535 51492045 ~ 51523279 (-)
LOC118937364 LOC106585457 other downstream 1239355 51364250 ~ 51370212 (-)
G990411 NA other downstream 1561464 51040780 ~ 51044308 (-)
G989880 LOC106579995 other downstream 1981667 50623430 ~ 50624105 (-)
ct030 LOC106579885 other upstream 2502278 55122507 ~ 55124484 (-)
adgra2 LOC106579839 other upstream 4070119 56690351 ~ 56787685 (-)
G997269 NA other upstream 4318806 56939038 ~ 56941535 (-)
G997343 NA other upstream 4429743 57049975 ~ 57050306 (-)
LOC110536040 LOC106579832 other upstream 4469626 57088502 ~ 57096328 (-)

Expression

LOC110535938(sf3a1) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110535938(sf3a1) Expression in each Bioproject

Bar chart with 21 bars.
LOC110535938(sf3a1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network