Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118937454 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 54538988 ~ 54549711 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005034803.1 | True | 332 | mRNA | 0.44 | 3 | 54538988 | 54549711 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110535965 | LOC106579898 | coding | upstream | 189400 | 54328006 ~ 54349588 (+) |
| LOC110535063 | LOC106579900 | coding | upstream | 308544 | 54147143 ~ 54230444 (+) |
| LOC110535962 | LOC106579901 | coding | upstream | 392284 | 54113791 ~ 54146704 (+) |
| LOC110535959 | LOC106579903 | coding | upstream | 455900 | 54069351 ~ 54083088 (+) |
| LOC110535960 | LOC106579905 | coding | upstream | 470143 | 54067599 ~ 54068845 (+) |
| LOC110536632 | NA | coding | downstream | 79993 | 54629704 ~ 54631495 (+) |
| LOC110535974 | vgll4 | coding | downstream | 452684 | 55002395 ~ 55015938 (+) |
| slc20a1a | s20aa | coding | downstream | 486671 | 55036382 ~ 55043511 (+) |
| LOC110535976 | LOC106579886 | coding | downstream | 494812 | 55044523 ~ 55070046 (+) |
| LOC110535979 | LOC106579884 | coding | downstream | 523163 | 55072874 ~ 55075806 (+) |
| G993857 | NA | non-coding | upstream | 125333 | 54413452 ~ 54413655 (+) |
| G993853 | NA | non-coding | upstream | 132098 | 54406677 ~ 54406890 (+) |
| G993840 | NA | non-coding | upstream | 151264 | 54384143 ~ 54387724 (+) |
| G993750 | NA | non-coding | upstream | 292871 | 54245897 ~ 54246117 (+) |
| G993743 | NA | non-coding | upstream | 301823 | 54236953 ~ 54237165 (+) |
| G994344 | NA | non-coding | downstream | 56261 | 54605972 ~ 54606298 (+) |
| G994351 | NA | non-coding | downstream | 62231 | 54611942 ~ 54612149 (+) |
| G994356 | NA | non-coding | downstream | 65142 | 54614853 ~ 54615091 (+) |
| G994370 | NA | non-coding | downstream | 73077 | 54622788 ~ 54623058 (+) |
| G994374 | NA | non-coding | downstream | 74568 | 54624279 ~ 54624484 (+) |
| G993738 | NA | other | upstream | 312525 | 54226131 ~ 54226463 (+) |
| G993612 | NA | other | upstream | 512934 | 54025768 ~ 54026054 (+) |
| G992601 | fzd10 | other | upstream | 1089346 | 53446507 ~ 53449642 (+) |
| LOC110535061 | rimbp2 | other | upstream | 1156797 | 53281076 ~ 53398401 (+) |
| G991714 | LOC106579928 | other | upstream | 1994428 | 52542244 ~ 52544560 (+) |
| G995268 | NA | other | downstream | 805490 | 55355201 ~ 55357116 (+) |
| LOC110535064 | cabin1 | other | downstream | 940386 | 55489662 ~ 55577699 (+) |
| G995364 | NA | other | downstream | 968998 | 55518709 ~ 55519174 (+) |
| G995607 | NA | other | downstream | 1453143 | 56002854 ~ 56004867 (+) |
