LOC110536632


Basic Information

Item Value
gene id LOC110536632
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 54629704 ~ 54631495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475495.2
gaaaatgaaacatagatcaatgtgacgtcgaccgccgagcaccacccgaacaaggagaggcattgACTTCGGGCAGAAGTCATGACAGAAACATCGAGACGATTGCCCATTATTTTGTTTTTCCAAGGACCCAGAAAATGGAGGCAgtgggagaacctattcaaATACAGAGAGCTGCAAATTACTGTCTGCAGATGAAGAGGTCCCAATGAATGTCACAAGAGAATAAGAGTACATCCGTGTATACCATTGGTTATATGTATACCTATGTTAGCAAATGTTGTAAACAAAAATACAGTACCACTGGAAATTTTTGGGACAATAATGTCCTCCTCTAGGATAGATGGACATATCCCCTTTTTGTAGGCCTAGAATAGATGGTTGCATTCAAGACAATGTCgttttttttattgatctgtttgtcagtgttagcagagtaggcctaggctatcCCTTGATCTGTCATATTAAAACAATATTCTGCTAATGTCTTTGGTCATGTAAAGAGTAGTGGAATTGCATGCAATGTGTTTATCAAAGACCACATTTTTCCTGTgcaaaggagagaaaagaaatgtCTCTGATAGAGCCTATAGGCCTATGCCTCTACTCGCTCAGACACAGTGATTAGATTATTAATAGCCTAATAAATGATATCACTATTcaatctactcatcacattaggaataGTTGGCTTACAAAATGTGATGTTAGATTCTtgcaatgcttttattataaCGGTGCATTTCTACAGTGAAAAAATTATGCACCGCCTACTTCATGAGAGAGACGCAAGCTAAAAGATAGACTACAAGTTATCTCGCTAGCTAATGTTGGCCAACTTTAGTCTTATTGTTAACACCTGGTTAGCATAACAGCTAAACCTGAAATCGATCAGATTTACGAGTAATTGAATTGTTGGGAGTAGACGTACTGACAGCTGTCTGGGTTCTGGTCTTGACGGGTAAAAAGGTTCTTGAGTCTTAATTATTTCCTTGGTGTTTCATGATTGTGGGTAATCAGTAAAAATATTTTTTGCCTGTTGTCTTTCCTGCCTTGTTAGAGCAGCCAAATACTGCACAAAAATGTACAGGGGTGATAAATTAAGTCGTTTTGGGCACAGTTATCATGCAGCTAGGGGTAGCCAATCATCTGTGGTTGTCGGAAGAATTGATACTGTGGTCTCCCTCTGTGCTTGTATACAGCTTTTTTTTAATACCATTTACATTTTTGAAatataaccattttaaatgtgcaTTAAAGCTCCATAGGCTTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475495.2 True 1278 mRNA 0.38 2 54629704 54631495

Neighbor

gene id symbol gene type direction distance location
LOC118937454 NA coding upstream 79993 54538988 ~ 54549711 (+)
LOC110535965 LOC106579898 coding upstream 280116 54328006 ~ 54349588 (+)
LOC110535063 LOC106579900 coding upstream 399260 54147143 ~ 54230444 (+)
LOC110535962 LOC106579901 coding upstream 483000 54113791 ~ 54146704 (+)
LOC110535959 LOC106579903 coding upstream 546616 54069351 ~ 54083088 (+)
LOC110535974 vgll4 coding downstream 370900 55002395 ~ 55015938 (+)
slc20a1a s20aa coding downstream 404887 55036382 ~ 55043511 (+)
LOC110535976 LOC106579886 coding downstream 413028 55044523 ~ 55070046 (+)
LOC110535979 LOC106579884 coding downstream 441379 55072874 ~ 55075806 (+)
adra1a adra1a coding downstream 507498 55136414 ~ 55157272 (+)
G994381 NA non-coding upstream 1575 54627912 ~ 54628129 (+)
G994376 NA non-coding upstream 4504 54624986 ~ 54625200 (+)
G994374 NA non-coding upstream 5220 54624279 ~ 54624484 (+)
G994370 NA non-coding upstream 6646 54622788 ~ 54623058 (+)
G994356 NA non-coding upstream 14613 54614853 ~ 54615091 (+)
G994556 LOC106579892 non-coding downstream 155013 54786508 ~ 54788518 (+)
G994618 NA non-coding downstream 163675 54795170 ~ 54795695 (+)
G994707 NA non-coding downstream 274545 54906040 ~ 54906295 (+)
G994710 LOC106579890 non-coding downstream 282377 54913872 ~ 54914899 (+)
G994747 LOC106579889 non-coding downstream 315996 54947491 ~ 54952437 (+)
G993738 NA other upstream 403241 54226131 ~ 54226463 (+)
G993612 NA other upstream 603650 54025768 ~ 54026054 (+)
G992601 fzd10 other upstream 1180062 53446507 ~ 53449642 (+)
LOC110535061 rimbp2 other upstream 1247513 53281076 ~ 53398401 (+)
G991714 LOC106579928 other upstream 2085144 52542244 ~ 52544560 (+)
G995268 NA other downstream 723706 55355201 ~ 55357116 (+)
LOC110535064 cabin1 other downstream 858602 55489662 ~ 55577699 (+)
G995364 NA other downstream 887214 55518709 ~ 55519174 (+)
G995607 NA other downstream 1371359 56002854 ~ 56004867 (+)

Expression


Co-expression Network