ct030 (LOC106579885)


Basic Information

Item Value
gene id ct030
gene name LOC106579885
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55122507 ~ 55124484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934622.1
TTTTGTGTAATATAAACTTTCGTTTTGCTCTGTTTTGCTTCGTTTGGTTCTTAAACGTTAAACGATTTCCGTAATGAATACACATCTCTTATCTGGAGAACAGAAACGCGCATTGCGCAGGCGTTGTACAGACGAAACAACGGAAGAAGTCACTTCAGCATGAGTAGCTAGGTGGACTACCAACCATCGTTTTGATTTCTACAGAATTAGGCTACCTCTATTTTTAACTTCTTATCTGAATCGGCGGTACCCTTCTTTCTATTTACACTTGGTTCCAAcgtaggttacagtaggctaatTATCGAGAGAAACAACATTGTGGCTGACAAGGCGGGCGCCATCAGTGTAGCATTTCTCAATATGAAATGATATAATCGGCTGCCAATGTAACAGAACAATGCAACATTTTTAAGCAAGAGTGACACTTTTGTTTCCTGTAATTTAAAGCAAAGATGACAGCTCGCAACAGTGTAACACATGGAATACCCAACACTAAGGTCAGGTACTCCAAATTAGCCAGTGATGATGACGGCTACATTGACCTGCAGTTCAAAAAGAGCCCACCCAAGGTCCCATACAAAGCCATTGCACTGGCCACTGGCCTCTTCTTGATTGGCTCTCTGTTAATCACCATTGGAGCCCTCCTATTGGCAGGATACTTTGAAGTCACAGTGAGTATGGCACATGCTGACCGGACTGTGCCTGTTCTCATCATTGGAATCCTGGTTTTCCTTCCTGGATTCTATCACCTGCGGATAGCTTACTATGCATCAAAGGGCTACCGTGGTTACTCCTATGATGATATACCAGATTTTGATGACTGAGCAACTCCTAATTGAGAGTCATGTGTTGTTTTTACATGTGTTGTTAAATACAGTAATCAGACAGGGATCTAGTCCTAAAGCAGATGTCCTTTGATGTTTTTGTTAATCATAGAATGTCTTAACTTGTTGTTCTTTGACTGAATCACCACCATAGTTCATTATGATTGATGACTATATTTAGTTTAGATATGTTTGTGTTATTGTTTCTAACAAAGAACATGTTTTTTTAGTTGACGGATCAATTAGGAATGTGTTTCTTAGGatgctattttttttttcaatgaaaGAGAAGGATGTAATTTCTATGCTGATAAAATACTTAGCTGTGCTGTGAGGGAGGCATGAGTTGAATGTCTTGTCCAACTGTTAGTCCTATACCTGATCACTGTAACCATAAACAGAACCATGAGTTTGAGACATTGTGGCTGAACTTGAAAGTTGACTGTTTTTCTGTTGAAATGTCACTTGTGCGTTCCTGTAGGGTTTGCTGGTAGGAGTATCTTATGTGATTAATGCCAATCCTTTGATCTCCATATGGTGTGCTGCTAGGCCTGTGAGAGTCAAGAGGGAAAAGTAGTCACGCAACAATACAGAGCTCAAAGTGTCTGGTATAGATATCTACTGACTAAGTTTGAGAGGCATTGCCACTGGCAATGACATCAGGAGTGTATCCATATGTTGAAAAGAAAGGCAATTGTGGTTGTGCACCAGCTCAAATAAAGGCTATTATAAACAAC
>NM_001165120.1
ACAGACGAAACAACGGAAGAAGTCACTTCAGCATGAGTAGCTAGGTGGACTACCAACCATCGTTTTGATTTCTACAGAATTAGGCTACCTCTATTTTTAACTTCTTATCTGAATCGGCGGTACCCTTCTTTCTATTTACACTTGGTTCCAAcgtaggttacagtaggctaatTATCGAGAGAAACAACATTGTGGCTGACAAGGCGGGCGCCATCAGTGTAGCATTTCTCAATATGAAATGATATAATCGGCTGCCAATGTAACAGAACAATGCAACATTTTTAAGCAAGAGTGACACTTTTGTTTCCTGTAATTTAAAGCAAAGATGACAGCTCGCAACAGTGTAACACATGGAATACCCAACACTAAGGTCAGGTACTCCAAATTAGCCAGTGATGATGACGGCTACATTGACCTGCAGTTCAAAAAGAGCCCACCCAAGGTCCCATACAAAGCCATTGCACTGGCCACTGGCCTCTTCTTGATTGGCTCTCTGTTAATCACCATTGGAGCCCTCCTATTGGCAGGATACTTTGAAGTCACACATGCTGACCGGACTGTGCCTGTTCTCATCATTGGAATCCTGGTTTTCCTTCCTGGATTCTATCACCTGCGGATAGCTTACTATGCATCAAAGGGCTACCGTGGTTACTCCTATGATGATATACCAGATTTTGATGACTGAGCAACTCCTAATTGAGAGTCATGTGTTGTTTTTACATGTGTTGTTAAATACAGTAATCAGACAGGGATCTAGTCCTAAAGCAGATGTCCTTTGATGTTTTTGTTAATCATAGAATGTCTTAACTTGTTGTTCTTTGACTGAATCACCACCATAGTTCATTATGATTGATGACTATATTTAGTTTAGATATGTTTGTGTTATTGTTTCTAACAAAGAACATGTTTTTTTAGTTGACGGATCAATTAGGAATGTGTTTCTTAGGatgctattttttttttcaatgaaaGAGAAGGATGTAATTTCTATGCTGATAAAATACTTAGCTGTGCTGTGAGGGAGGCATGAGTTGAATGTCTTGTCCAACTGTTAGTCCTATACCTGATCACTGTAACCATAAACAGAACCATGAGTTTGAGACATTGTGGCTGAACTTGAAAGTTGACTGTTTTTCTGTTGAAATGTCACTTGTGCGTTCCTGTAGGGTTTGCTGGTAGGAGTATCTTATGTGATTAATGCCAATCCTTTGATCTCCATATGGTGTGCTGCTAGGCCTGTGAGAGTCAAGAGGGAAAAGTAGTCACGCAACAATACAGAGCTCAAAGTGTCTGGTATAGATATCTACTGACTAAGTTTGAGAGGCATTGCCACTGGCAATGACATCAGGAGTGTATCCATATGTTGAAAAGAAAGGCAATTGTGGTTGTGCACCAGCTCAAATAAAGGCTATTAT
>TU1132417
GACGAAACAACGGAAGAAGTCACTTCAGCATGAGTAGCTAGGTGGACTACCAACCATCGTTTTGATTTCTACAGAATTAGGCTACCTCTATTTTTAACTTCTTATCTGAATCGGCGGTACCCTTCTTTCTATTTACACTTGGTTCCAAcgtaggttacagtaggctaatTATCGAGAGAAACAACATTGTGGCTGACAAGGCGGGCGCCATCAGTGTAGCATTTCTCAATATGAAATGATATAATCGGCTGCCAATGTAACAGAACAATGCAACATTTTTAAGCAAGAGTGACACTTTTGTTTCCTGTAATTTAAAGCAAAGATGACAGCTCGCAACAGTGTAACACATGGAATACCCAACACTAAGGTCAGGTACTCCAAATTAGCCAGTGATGATGACGGCTACATTGACCTGCAGTTCAAAAAGAGCCCACCCAAGGTCCCATACAAAGCCATTGCACTGGCCACTGGCCTCTTCTTGATTGGCTCTCTGTTAATCACCATTGGAGCCCTCCTATTGGCAGGATACTTTGAAGTCACACATGCTGACCGGACTGTGCCTGTTCTCATCATTGGAATCCTGGTTTTCCTTCCTGGATTCTATCACCTGCGGATAGCTTACTATGCATCAAAGGGCTACCGTGGTTACTCCTATGATGATATACCAGATTTTGATGACTGAGCAACTCCTAATTGAGAGTCATGTGTTGTTTTTACATGTGTTGTTAAATACAGTAATCAGACAGGGATCTAGTCCTAAAGCAGATGTCCTTTGATGTTTTTGTTAATCATAGAATGTCTTAACTTGTTGTTCTTTGACTGAATCACCACCATAGTTCATTATGATTGATGACTATATTTAGTTTAGATATGTTTGTGTTATTGTTTCTAACAAAGAACATGTTTTTTTAGTTGACGGATCAATTAGGAATGTGTTTCTTAGGatgctattttttttttcaatgaaaGAGAAGGATGTAATTTCTATGCTGATAAAATACTTAGCTGTGCTGTGAGGGAGGCATGAGTTGAATGTCTTGTCCAACTGTTAGTCCTATACCTGATCACTGTAACCATAAACAGAACCATGAGTTTGAGACATTGTGGCTGAACTTGAAAGTTGACTGTTTTTCTGTTGAAATGTCACTTGTGCGTTCCTGTAGGGTTTGCTGGTAGGAGTATCTTATGTGATTAATGCCAATCCTTTGATCTCCATATGGTGTGCTGCTAGGCCTGTGAGAGTCAAGAGGGAAAAGTAGTCACGCAACAATACAGAGCTCAAAGTGTCTGGTATAGATATCTACTGACTAAGTTTGAGAGGCATTGCCACTGGCAATGACATCAGGAGTGTATCCATATGTTGAAAAGAAAGGCAATTGTGGTTGTGCACCAGCTCAAATAAAGGCTATTATAAAC

Function

NR:

description
PREDICTED: transmembrane protein 230-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934622.1 False 1561 mRNA 0.40 3 55122507 55124484
NM_001165120.1 False 1415 mRNA 0.40 3 55122514 55124357
TU1132417 True 1416 TUCP 0.40 3 55122510 55124354

Neighbor

gene id symbol gene type direction distance location
LOC110535980 LOC106579883 coding downstream 713 55083350 ~ 55121794 (-)
LOC110535977 LOC106579887 coding downstream 49751 55070446 ~ 55072756 (-)
LOC110535973 LOC106579888 coding downstream 112485 54991202 ~ 55010022 (-)
LOC110535972 LOC106579889 coding downstream 166966 54947489 ~ 54955541 (-)
LOC110535971 LOC106579890 coding downstream 181845 54909625 ~ 54940662 (-)
LOC110535981 LOC106579880 coding upstream 46970 55171454 ~ 55190502 (-)
LOC110535983 LOC106579879 coding upstream 68179 55192663 ~ 55205994 (-)
LOC110535982 LOC106579878 coding upstream 81860 55206344 ~ 55223058 (-)
LOC110535985 LOC106579877 coding upstream 184247 55308731 ~ 55342316 (-)
cenpe cenpe coding upstream 230110 55354594 ~ 55377676 (-)
G995044 NA non-coding downstream 42534 55002856 ~ 55079973 (-)
G995073 LOC106585548 non-coding downstream 72676 55049384 ~ 55049831 (-)
G995035 NA non-coding downstream 135987 54986095 ~ 54986520 (-)
G995032 NA non-coding downstream 139012 54983142 ~ 54983495 (-)
G995179 NA non-coding upstream 155702 55280186 ~ 55280395 (-)
G995181 NA non-coding upstream 156546 55281030 ~ 55281260 (-)
G995187 NA non-coding upstream 162946 55287430 ~ 55287638 (-)
G995188 NA non-coding upstream 165480 55289964 ~ 55290312 (-)
G995204 NA non-coding upstream 175211 55299695 ~ 55299961 (-)
G991349 NA other downstream 3279985 51842066 ~ 51842522 (-)
specc1la specc1l other downstream 3599270 51492045 ~ 51523279 (-)
LOC118937364 LOC106585457 other downstream 3756090 51364250 ~ 51370212 (-)
G990411 NA other downstream 4078199 51040780 ~ 51044308 (-)
G989880 LOC106579995 other downstream 4498402 50623430 ~ 50624105 (-)
adgra2 LOC106579839 other upstream 1565867 56690351 ~ 56787685 (-)
G997269 NA other upstream 1814554 56939038 ~ 56941535 (-)
G997343 NA other upstream 1925491 57049975 ~ 57050306 (-)
LOC110536040 LOC106579832 other upstream 1965374 57088502 ~ 57096328 (-)
G998183 NA other upstream 2602811 57727295 ~ 57732883 (-)

Expression


Co-expression Network