ddx51 (ddx51)


Basic Information

Item Value
gene id ddx51
gene name ddx51
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55377683 ~ 55382284 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621423.2
GTGGGTTCCGAGGATAGCGGGCTTTTCATAACGCGCTCActgtattaaaatatatatacaaatattgaTAACACTAGTTAAAATATTAAGCTATGAACAAATAAGATTAAAAAAGATTAGCGTTACTTACTCACAAGACATAAAGAAAACATTACCTTTTAATTTTTGAAAGTGGTCAACCCTTTTTTTTTTGGTCAACTCTTCTTCTGAAGCTACTAACGTCATTTTAAAGCGACTTTAAACAGGAAGACACCTCCTTTCTCTAAAAAGCTCTAGGAAAACACACACGTGTGAAACAGCAAAAATAGTTAAagttataatatatattgttGTGGAATGGCTGCTAGATAACGTTGCATTATTGAAGTTATTGCCCACATCTCATTTTTTGGCCCCTTTCAACATTTGAACAATGGCTCTGTTCCTTATTAATAGATACCTTGGGGATGAAGGAGATGATGGCTCGAGCAACGAATCTCGAGCCAAAGCGTTGTTGGCTAAGCTTCAGAGGAAGGCCAAAGTCAAGGAGCAACAGAGCTTGTCATGTCAAGAAGAATACCAGTCAAAAACAACAGTTGAGAATGACGGGGACACCTCGGTGAAGAAGAAAAGAAAAAACAAGGGAGGCAACCTCGATGAGACAAAACACCCAAAGAAGAGGAAAGTGTCCCCACCAGACCCTGAAGAACTTTCCGAGGGTGACAATGCACGAAAGAAGAAGGATACGAAAAAGATGCAACTGACAGAAGAGGACAAAGATGGGATGAAGCAGACATCTGTCCACAATAAGAATAGAAACCTGcaagaggctgctgctgctgacaAAACAGAGCTGCTAAAAAATGATGATGAAATGGTGGAGAAAATTCAGACTGACCAGTCAATACAAGACACAGAAACAAGTCCCTCTCAGACTGGTTTCACCATACTAGGAGGATTTGAGAAAAAGATTATTCAAAAGGTACAAAGAGTCCTGCCCAAGTGGCTTGCTGAACCAGATGTAATCCAGAGAGACATTACAAGCAACCTAGTCCCCATCAGTGACGTCCCAGGAATTTGTACTAAACTCCAGCGGAAACTTGAGAGCAATGGAATTCATCACCTCTTTCCAGTACAAGCGGAGGTCATCCCAGCCATTTTAGAGAGTGTCTCTCATGGTCTATTGATTGGAAGAGGGGGCTACAAACCCAGAGACATTTGTGTGTCTGCTCCAACGGGGAGTGGCAAGACTCTGGCATTTGTCATACCTGTTATTCAGGCACTGATGGAGAGAGTTGTATGTGAAGTCCGGGTTTTGGCAGTGTTGCCCACCAAAGAGCTTGCACAGCAgGTTTGCAAAGTATTCAGTTCATATGCGGAGGGCAACAGCTTGAAAGTGGTCATGCTTGCTGGTCAAAAGTCCTTTGCCGCCGAGCAAGCATCACTCTCAGAAAACAGAGGTGGAATAAGCCACAGTTTGGCAGACATTGTTGTCGCAACCCCTGGGAGACTAGTTGATCACATCAATAAGAATGATGGTTTCAGTTTGGAACACCTCCGCTTCCTTATCATTGATGAGGCAGACCGGATGATTGACAGCATGCACCAGTCTTGGCTCAGTCAGGTGACCAAGGCAGTTTACAGACCCAGGAGAGTTTCTGAAGCAGTCTCAATCTTCAAGAGGACAGAGCCTGCACCTATCACAGCAGCGAGCTTGTCACCGCCGCAGATGCCTCTGCAGAAGCTCCTGTTCTCAGCCACACTGACTCAGAATCCAGAGAAGTTGCAGCAGCTAGGCCTGCATCAACCCAGACTCTTTAGCTCTGTCCACAGTCGGTCAACAACCAACCCTGAGTCTCAAGAGAGGTTTAACTTCCCACAGGGCCTGACAGAATACTATGTGCCCTGCACTCTGAGTAAGAAGCCCCTCCTCATCCTTCATTTCATATTGCGCCTGAAGTTTAGTCCCATTCTGTGCTTCACCAATTCCAGAGAAGCCGCTCACAGACTGTACCTGCTAGTGCATCTTTTTGGTGGAGTGCAGGCAGCTGAGTTCTCCTCACGACTCTCCCCCAATGAGAGGAAGAGAACCCTCAAGGAATTTGAACAGGGAAAGATCCAACTTTTGATCAGCACTGATGCTGCTGCCAGAGGCATTGACATCAACGGGGTGAAATGTGTTGTGAACTACGATGCACCACAGTTCATCAGGACTTACATTCACCGGGTTGGAAGAACTGCAAGAGCGGGAAAATCTGGACTGGCCTTCACATTTCTGTTGGGGGTACAGGAGAATAAATTTATTCAGATGGTGAAGGATGCAGGCAGCCCTGGGATCCACAAACAGATAGTCAAGCCTGGGAATCTGAAGAGCATGGAACCCTGCTATCAACAGACACTACTGGAGTTGGGGAATACCATTAAGggTGAAAAGGCCAAGAAGCGCGTCTAACACAGTGACTTGGGTCAACATACTGTAAGATTGTTCCTTCTCTTGTGACAGGCAAAACCAGTGGTCAGCATGCACACAAGATTTGGTTCCAGGTGCAGACTTTTGTatgaaatgtttgtttttctcaAATAAATATGGGACATGTCAATTAAT

Function

symbol description
ddx51 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleolus. Predicted to be active in nucleus. Orthologous to human DDX51 (DEAD-box helicase 51).

NR:

description
ATP-dependent RNA helicase DDX51

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14807 DDX51, DBP6; ATP-dependent RNA helicase DDX51/DBP6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621423.2 True 2584 mRNA 0.45 16 55377683 55382284

Neighbor

gene id symbol gene type direction distance location
adra1a adra1a coding upstream 221134 55136414 ~ 55157272 (+)
LOC110535979 LOC106579884 coding upstream 301877 55072874 ~ 55075806 (+)
LOC110535976 LOC106579886 coding upstream 307637 55044523 ~ 55070046 (+)
slc20a1a s20aa coding upstream 334172 55036382 ~ 55043511 (+)
LOC110535974 vgll4 coding upstream 361745 55002395 ~ 55015938 (+)
LOC110535988 LOC106579875 coding downstream 1142 55383426 ~ 55387596 (+)
LOC110535989 LOC106579874 coding downstream 30091 55412375 ~ 55422164 (+)
LOC118937389 NA coding downstream 98914 55481198 ~ 55488780 (+)
LOC110535064 cabin1 coding downstream 107378 55489662 ~ 55577699 (+)
tbx16 LOC106579871 coding downstream 205080 55587364 ~ 55590671 (+)
G995272 cenpe non-coding upstream 8896 55368327 ~ 55368787 (+)
G995273 NA non-coding upstream 11529 55364320 ~ 55366154 (+)
G995269 NA non-coding upstream 12283 55359853 ~ 55365400 (+)
G995264 NA non-coding upstream 27688 55349767 ~ 55349995 (+)
G995258 NA non-coding upstream 30818 55346476 ~ 55346865 (+)
G995289 NA non-coding downstream 5902 55388186 ~ 55388406 (+)
G995290 NA non-coding downstream 6609 55388893 ~ 55389308 (+)
G995322 NA non-coding downstream 43385 55425669 ~ 55425894 (+)
G995323 NA non-coding downstream 46059 55428343 ~ 55430185 (+)
G995327 dock5 non-coding downstream 51709 55433993 ~ 55436200 (+)
G995268 NA other upstream 20567 55355201 ~ 55357116 (+)
G993738 NA other upstream 1151220 54226131 ~ 54226463 (+)
G993612 NA other upstream 1351629 54025768 ~ 54026054 (+)
G992601 fzd10 other upstream 1928041 53446507 ~ 53449642 (+)
G995364 NA other downstream 136425 55518709 ~ 55519174 (+)
G995607 NA other downstream 620570 56002854 ~ 56004867 (+)
LOC110536010 LOC106579856 other downstream 645887 56028141 ~ 56037300 (+)
LOC110536021 LOC106579845 other downstream 1004235 56386314 ~ 56434657 (+)

Expression


Co-expression Network