LOC110535988 (LOC106579875)


Basic Information

Item Value
gene id LOC110535988
gene name LOC106579875
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55383426 ~ 55387596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621424.2
aaccacgctctcaccaagctctaagaaacatatggttctcagaacgttatgtgctaccTGGGTAGGGACTTAAAAACAAAAATCCAATCTTATTTCTCAATAAGAAATCACAAAAGGCCAAAATACTGAAAAAAAATCATTTTATCCTGCCATTAGTTTAAACAGCACTGATCTGATTTCCCAAACATATTTGATGTATTAGGAGAGATTGTTCTCACTGTTATTGCTGACCTGAACTGCACATGATGTATGTTTGAAGGGTCCCTTGTAGTACTTTACATTGACAAACTATACATCTTTTGTTTTTACTTATAGTTGTATGTAGCCCAAATGTTACAACacgttttcctattttgttgtgaCGCTATTTATAGATACTGTGGACAGTCGGCCTGCTATAGGCTACGACAGCGAAATTAGTCATTACATGTTTTAATGTTTTAACAGATTAGGGATGCCAGATTATGGAGGCTACTTTTTCTTATGAAAATTCGTCATGAGTAAGGTAGCTTTTGTAAATAATTATAGATCGTTCATAAATCACTATGTTGAAGAACTTTTATCTTTCGATAAATGCacaagtttaaaaatatatatattttagtaaCTCGAATGTGACCGATTATTATACAGTGAAATTCTCTCAATTcgaagggctttattgacatgggaaacatgtttccCCTTAAcaaagaaagtgaaatagatcacacaatttaaataaaaaatgaacagtaaacattacacttaaaaaagtttcaaaggaatagagagacatttcaaatgccaTTAtggctgtgtctctctccctctcttttcgcGAGGGTGCATGCATGTGTATGTAGAGAGCGAGAAGGCGCAAGGTGTTGCAGTTGCACTTGGTTGTGCAATCCGACACGCCTGAACGGAATTGTTTATTGCGCATAGCCagtatttccattttttttttgccGCGTACGGGTGAAGTCGCTACCAGTCCAGTAGACTATTTAGGGATGAGTACATTATGCTCTTCCGCGGATATATTGAACAGTTGGAACTGCTTACGTTCTAACTTGTCTTTTATTCTGATTTAAAGTATTATTGTCAGTGATGTATACATTTAAGAGCATCTCTTGAAACTCACTAGGCAATTCATGTAATATTTTCAGTTTTCTAACGGTAGAGCAGGCGTGTGTCGAATGAAAGGAGTTAAATGAATTATTTGGACAGTTCCATGGTGCTGAAAGGATTGCTCATATTTCACTAAGCAGCCATGGGTTCCCTAGTTTGGGATAGGCGTCTTTCATGTCTTCTTCTCCTGTCATCTTTTCTTCTGCTGCTCAGCAAGGGGGAGAGGATGTGCCCAGCAAGTTGTCGCTGTGAAGGGAAGATTGTTTATTGCGAGTCTGGCATCTTTCAAGACATCCCAGAAAACATCTCTACTGGATGCCAGGGTCTGTCCCTGCGCTACAACAGCCTACTGACTCTGCTGCCTTACCAATTCGCTCATCTCAACCAGCTCATCTGGCTTTACCTGGACCACAATTCCATCACCGCTATAGATAGCTTAGCCTTTCAGGGTGTGCGTAGGCTCAAAGATCTGATTCTCAGCTCTAACAAAATTACACTTCTACAAAATAAGACTTTCAATGCTGTACCAAACCTGCGCAATCTTGATTTGTCCTACAACCAGCTACATTCTCTGCAGCCAGGTCATTTCTATGGTCTGCGTAAGCTCCAAAACCTTCACCTACGATCCAATGGTCTCAACAGGATACCTGTACGCACTTTCCTGGAGTGTCGCAATCTGGAATTCCTGGACCTGGGTTACAATTACCTACGCACCCTTACCCGCACCACCTTCTTGGGGCTGTTCAAGTTGAAAGAGCTACACTTGGAGCATAATCAATTTTCAaggataattttttttattttcccacgCCTTAACAATCTACAGGTCCTCTACTTGCAATGGAACCGCATACGAGCCATCAATCAGGGCCTGCCTTGGATCTGGCATACACTGCAAAAATTAGACCTCTCAGGAAATGACATCCAGATCTTGGACCCAGCTGTTTTCCAGTGTATGCCAAACTTACAGATACTCAATCTTGAATCCAACAAGCTGAGCAATGTGTCTCAGGACACGGTTTCAGCCTGGGTCTCCATTAATACCATCAGCCTGGTGGGTAACGCCTGGGACTGCAGCCCTACTATTTGCCCACTGGTGACCTGGCTGAAGAACTTCAGAGGCTCAAAGGACATCAACATGATATGCAGCAGCCCCAAGTCAGTTCAGGGAGACAGAGTAATCGACATAGTGAGGAACTACACAATCTGTGTGGACATATCAGTTGTAGACCAAACCACAGCTATGATCATGAGGCAAACCACAGCCTTAGCTGTGGACACCAAAAAGCCCACCACACCTCTCTCTGCCACGACGACAATAACCCAAGGTCTACCTGCATCAACTGTACAAAGACTCGCTCCACAACCTGTCTCTCCCATTGTGACAGACAAAGACACAACAGAGTTCATACTCATGACCTCCATCTCTCCAGAATCCTCCTCATTTTTCCCAGAACTAGAGTTTGAGCATATGGCCTTCCATAAAATCATTGCAGGCAGTGTAGCCCTATTTCTGTCTGTGTCATTGATCCTGCTGGTAATTTATGTCTCGTGGAGGCGCTACCCCAATAGCATGAGGCAGCTGCAGCAGCACTCAGTCAACCACAAACGCAGAAAAAAGGCCCGGAAGCAGGAGCTTAACCTTAACTCTCAGTTGCAAGAGTATTATTTGACTTACCATTCAAACTCTGAGACCATGGATGCATTGGTAAATGAGACGAGGTCCTGCCCCTGCACGATCTCAGGATCCAGAGAATGTGAGGTATGATCTGTCAAGTCCATCCTAAAAACGCACTCTGCCTGGGGGTCAGAGGTAAATGTTTTCCACAGGGATGCACTGTAAACCTCTTTAGTGAATGGAGACTGAGTTAAACTTCCATCCTCTGACTCTGTTCTTACTGTTGTTTTAAATTAAAGTTATCCATCCTAAAAATGCACTTTACAGCTGCTTGGGAGTCAGAGCTAAATGTTTTCCACAGGGATGCACTGTACAGATCACCGTGTGCATGGTGACTGACTACTAACATCCCCTGTTTGACTCTTGTTATTGTTGTTTTAAATTAACGTTATCACATTAAGGACAAATTGATTGGATGAATTAATCCTGTTTGTGAATATAAACCTAAACCTACTttctttcagcaggaaaataatcctgcagcaacaggaaatttgtGGATTATAGTTAATggccatttttgtaggggttgatacatttttccttAGGGCAAACCAAGTTGTAAGCTAGTAATaataaactttagaagcctttttaagcCTTGAATATACTAGAAATGTGCATTTCCTGCAGTGCAGGAAAATTGTCAGCAACAAAAGAGGGATAAAATTGAGATGGCACATCTGTATCTGCTGTTGATTACAAATTACCCCACTTTTCACTTTTCTTATCCTTGAGTAATATTGAGATCTTCGTGTTCATACAAGTAACTGATAGACTTTATGTGTAGTCTTTTCCAATATTTAGCTCTTATTTGTTTTATGGAATTATGATAACTGTATGTGAAATTGAATTATGTCATTAAACTTGTGAATGGTAGTTGCTAAA

Function

NR:

description
leucine-rich repeat transmembrane neuronal protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621424.2 True 3679 mRNA 0.41 2 55383426 55387596

Neighbor

gene id symbol gene type direction distance location
ddx51 ddx51 coding upstream 1142 55377683 ~ 55382284 (+)
adra1a adra1a coding upstream 226877 55136414 ~ 55157272 (+)
LOC110535979 LOC106579884 coding upstream 307620 55072874 ~ 55075806 (+)
LOC110535976 LOC106579886 coding upstream 313380 55044523 ~ 55070046 (+)
slc20a1a s20aa coding upstream 339915 55036382 ~ 55043511 (+)
LOC110535989 LOC106579874 coding downstream 24779 55412375 ~ 55422164 (+)
LOC118937389 NA coding downstream 93602 55481198 ~ 55488780 (+)
LOC110535064 cabin1 coding downstream 102066 55489662 ~ 55577699 (+)
tbx16 LOC106579871 coding downstream 199768 55587364 ~ 55590671 (+)
LOC110535995 LOC106580250 coding downstream 242882 55630478 ~ 55650138 (+)
G995272 cenpe non-coding upstream 14639 55368327 ~ 55368787 (+)
G995273 NA non-coding upstream 17272 55364320 ~ 55366154 (+)
G995269 NA non-coding upstream 18026 55359853 ~ 55365400 (+)
G995264 NA non-coding upstream 33431 55349767 ~ 55349995 (+)
G995258 NA non-coding upstream 36561 55346476 ~ 55346865 (+)
G995289 NA non-coding downstream 590 55388186 ~ 55388406 (+)
G995290 NA non-coding downstream 1297 55388893 ~ 55389308 (+)
G995322 NA non-coding downstream 38073 55425669 ~ 55425894 (+)
G995323 NA non-coding downstream 40747 55428343 ~ 55430185 (+)
G995327 dock5 non-coding downstream 46397 55433993 ~ 55436200 (+)
G995268 NA other upstream 26310 55355201 ~ 55357116 (+)
G993738 NA other upstream 1156963 54226131 ~ 54226463 (+)
G993612 NA other upstream 1357372 54025768 ~ 54026054 (+)
G992601 fzd10 other upstream 1933784 53446507 ~ 53449642 (+)
G995364 NA other downstream 131113 55518709 ~ 55519174 (+)
G995607 NA other downstream 615258 56002854 ~ 56004867 (+)
LOC110536010 LOC106579856 other downstream 640575 56028141 ~ 56037300 (+)
LOC110536021 LOC106579845 other downstream 998923 56386314 ~ 56434657 (+)

Expression


Co-expression Network