LOC110535989 (LOC106579874)


Basic Information

Item Value
gene id LOC110535989
gene name LOC106579874
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55412375 ~ 55422164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621425.2
cattgtATTTGCTGTTTGGCTAATTATTACACCTGTTTCAGAGTTTCAGGTGAAAGCAACTGAAGAGAAGGCAAGCAAAAGTTTTGTTTTGGTTCACTCTGTCAAGCCTCTTGGAAACTACATTATCTTTGGAATATTGCTGTGCAGAAAGGTTTACCAACATGGTCACTCTGGGAAAGAGCCTAACATGCTCAAGACTACAGTTAGCTGTGATGTTTGTGGTAACAGTTTATCTGAATACAGATATCACAGTGGCTATGCAGATAACATCCACAGGGTCTCAGACCATTCAAAGAGCCCAGGGGGAGACAGTCATGCTGGGGTGCACATACACCCCTGCCCCCTCTGACACAGGAGATCTGGACATTGAGTGGTTGAGTGTCCATCCAGACATGACCCAGAAAGACCAGCTGGTCATATCTTATACAGGAGGGCAGAAATTGCATTACGGGGACCCCAGCTTGTCTAAGAGGATGGACTTCACAGGAGACCCCGCGTTGGGAGACGCATCCGTCTCCATCTCTGCAGTGAAAGCCTCAGACACAGCCACCTACCAGTGCAAAGTCAAGAAGGCGCCGGGTGTCGACATGCGAAAAGTCACTCTGGTGGTGATGGTCCCTCCATCAGTGCCTAAGTGTTGGGTTGAAGGCGTTGAAGAGAAGGGAGCTGATGTCTCCCTGCGATGCAAGTTATCCGTGGGATCCACCCCCCTTAACTATGTCTGGatcagagagagtggaggggccATCCCGCCTACAGCAACACAAAACTCTCAGACTGGAGAGTTGATGATAAGAAATCACTCAGAGAGCTACATGGGAAATTATCTGTGTGTGGTGTCGAATCCTGTGGGCAAAGAGCAGTGTAAATACACCCTGCACGCATACAACCCTCCCAACAAAGCAGGGATCATAGCAGCTGCTGTGATTGGTGCACTGCTACTgttgctcctcctcctgctcctcataTGGCTTCTGATCTGCTGCTGCCACAAACGTCGCTACGAGAAGGAGGTTGCACATGAAATAAGGGAGGATGCCCCAGCCCCAGAGAGCCGACCTGCCAGCAGGAACTCCAGCTTCCGCTCGGTCCTAGGCTTCCGCTCCCCCCCTGGGGCAGTCTATAGCTCAGTGACAAAAGGTCAGCCCAAGAGGACAGAGTCAGACAATAGGAGCTTCTACACCAACAGTAGCATAGGCATGCCTGCCCCCAGCAAGCAGAAAGCCCCTCATTTGCCACCTGTGCTGAAATATGACAGCAGTAATGGTTACCCTGTGTAACAATGTTTTGGGTTGGGGTAAGGATAAGCATGAAACCTCataatttttaattaattaatttttgTAATTCTTGGAAGGCCAGCCTTCAGTATAAACAGCTATATCACATGCAGACCCGGCATTACAGGATATGTATAATCTCATTCCCATGCTACTTCCACCCTGTACTTTGTGCAATAGCCTAAAAACTCTTGGTGCAATAGTGCAACGGATAATGTTTTAGTCACGTGAAGCTCAATTGAGGATTTTGCCAATGAGAATGAACGAGATGATATTTAAAGTGTATGTCAGATgaagtggtgtaaaaatacttgaaagtactacttaagttgttttttgggatatctgtacttcactatttatatttgactacattcctaaagaaaataatgtacttcttACTCCATACATATTCTGACACccaaaaagtacttgttacattttgaatgcttagcaggacataaattgtctaattcacacttatcaagagaacgtcccaggtcatccctactgcctctgatctggcggactcactaagcaCATGCTTCATTGGTAAATTATATCGTAGCGTTGGAGCGTCTCCCTGGCTATCCGTTAaaagtttgcttaatataagaatttaaaaaataatttatacttttacttttgatgcttaagtatattttagcaattacatttacttttggtaCTTAAGCAAATATTTTTAGACTCAAGtagcattttactgggtgacttttacttgagtcattttctattaaggtatctttactttgggtactttttccaccactggtcagATGTATGTTTTTTATTCTATGCATGACTTATTTTGTCTAACAGACAAGTAACCAAAATGTTTAATCTTTTCTATGAGTTTtcaatgaaaatatatatttttttaatcaagcACTTGATTCTGAATCAGTTGTATCCTGTACATTTGTGTCACCAATCGAAAAAGCTAATGACCCCACCCTCAATACACCAGGCCAATGATTGTTAATACGGAATGACATTGTGTGCCAGTCATATGTGATTTAAGATATTGATTTTGATATAAAACTTAACGACTGATTTCATACTGACTAGCCTCAGAAGGCAGACAGTTCAAAGAATAAAAGCTTGAAGAAACTCTATGATCAAATGATTTTTTTCAATCTTAGCACGGTGGAATGTCTACAATGATTGATTTGGATGCAAGGATCACTGGGTTTTTGCCTTTTTTTTGGTTTCCATCATAGTATAATATTGATCTGTCTAGACTCCTCATTCCAGATTCAAACCTGCCACAAATAATTAGGCATGCTTTCGTTGTGGTCTTGCCAAGCAGAATGCTTTAAGAGTCAACACCCAGAGCACCAACCCTGTACAGTGTTGAATAAACACAGAACATGAAGGTGAGCCAAACGCAGGTTGCCCCCTTTATCACATGTAAATCGACCCTGTGGAACGGATGTGTAGATCTGTGGCCATAGGAAGGATATTTGCATGGGAACTGGACCCTGAGGTTTTGTTCAGTATCTGTGGTTTTGTCAACATGTCATTCTGCAATACATCTGGTTCAGTAATTCCACCGGATATACACAGAGCGAATTGGCCAGTGTTAcctagtgttgattcaggagttaaattaacacggtgtaaaataaccccagtgttgTGTGATTGTGTCAGTTTTACtttgtggatagtaaaacattcccatcaaAACCATGGCCATCGTTATCagatttcccagcatgctctacagcaaaacattttttaggATTGTTTTTCATATCTGTgcttttgcatgtacattgattgtgTAGCGTAAGACTAATCCATCaaatataaataaaacaattctaaACTA

Function

NR:

description
coxsackievirus and adenovirus receptor homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621425.2 True 3135 mRNA 0.42 8 55412375 55422164

Neighbor

gene id symbol gene type direction distance location
LOC110535988 LOC106579875 coding upstream 24779 55383426 ~ 55387596 (+)
ddx51 ddx51 coding upstream 30091 55377683 ~ 55382284 (+)
adra1a adra1a coding upstream 255826 55136414 ~ 55157272 (+)
LOC110535979 LOC106579884 coding upstream 336569 55072874 ~ 55075806 (+)
LOC110535976 LOC106579886 coding upstream 342329 55044523 ~ 55070046 (+)
LOC118937389 NA coding downstream 59034 55481198 ~ 55488780 (+)
LOC110535064 cabin1 coding downstream 67498 55489662 ~ 55577699 (+)
tbx16 LOC106579871 coding downstream 165200 55587364 ~ 55590671 (+)
LOC110535995 LOC106580250 coding downstream 208314 55630478 ~ 55650138 (+)
LOC110535996 LOC106585571 coding downstream 253972 55676136 ~ 55680687 (+)
G995290 NA non-coding upstream 23067 55388893 ~ 55389308 (+)
G995289 NA non-coding upstream 23969 55388186 ~ 55388406 (+)
G995272 cenpe non-coding upstream 43588 55368327 ~ 55368787 (+)
G995273 NA non-coding upstream 46221 55364320 ~ 55366154 (+)
G995269 NA non-coding upstream 46975 55359853 ~ 55365400 (+)
G995322 NA non-coding downstream 3505 55425669 ~ 55425894 (+)
G995323 NA non-coding downstream 6179 55428343 ~ 55430185 (+)
G995327 dock5 non-coding downstream 11829 55433993 ~ 55436200 (+)
G995314 nefl non-coding downstream 47821 55469985 ~ 55471095 (+)
G995368 NA non-coding downstream 73622 55495786 ~ 55498344 (+)
G995268 NA other upstream 55259 55355201 ~ 55357116 (+)
slc20a1a s20aa other upstream 368966 55036382 ~ 55043511 (+)
G993738 NA other upstream 1185912 54226131 ~ 54226463 (+)
G993612 NA other upstream 1386321 54025768 ~ 54026054 (+)
G992601 fzd10 other upstream 1962733 53446507 ~ 53449642 (+)
G995364 NA other downstream 96545 55518709 ~ 55519174 (+)
G995607 NA other downstream 580690 56002854 ~ 56004867 (+)
LOC110536010 LOC106579856 other downstream 606007 56028141 ~ 56037300 (+)
LOC110536021 LOC106579845 other downstream 964355 56386314 ~ 56434657 (+)

Expression


Co-expression Network