LOC110535992 (nefl)


Basic Information

Item Value
gene id LOC110535992
gene name nefl
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55469984 ~ 55472817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621429.2
CAGATCCCACTGTGCAGTCGACCCAGCAACTCCATCAAACATAGAGCTGCCTGTTTCACGAGTCATGAGTTCCATTGGTTACGACCCTTACTTTCCTTCCTCTTCCCACAAGAGGAGGGTGACGCTGCGCAGTGGAGGGTATGGAGGCAGTGCAGGAGGAATGACATCCAGGTCGGTGTATTCCagcctctctgcccccctctcatCCCATGGGTCATCCCGGCTGCATTACCCAACATACAGCCGTAGCTCCTCCATGCTGCTATCTGCCTCTGGCTCTGCTGCCACTGCTGAACTGGACATAAGCCAGGCGGTGCAGGTCAGCACTGAGTTCAAGGCCGTGCGGACGCAGGAGAAAGCCCAGCTGCAGGAGCTGAATGACCGCTTTGCCAGTTTTATCGAGCGCGTCCACGAGCTGGAACAGCAGAACAGGCTGCTGGATGCTGAACTGCTGATCCTCAGGCAGAAGCATGGCGAGCCCTCCCACCTCAGGTCCCTGTATGAGCACGAGATACGCCAGCTCCGTGCTGCTGTGGAGGAGGCCCGCGATGAGAAACAGGCTGCTCAGAACCACAGGGACCAGATGGAGGAGGTGCTGCAGAGTCTACAGGGCCGTTATGAAGAGGAGGTAGTCAGCAGAGAAGAGGTAGAAGGCCGTCTGATGGATGCAAGGAAGAGGGCGGATGAGGCTGCTTTGGGCGGTGTTGAGCtggagaagaggacagagacactACTGGATGAGTTGGCCTTTCTGAAACGTCTCCATGAGGGGGAGATAGCGGAGCTGCAGGCCCAGGTGCAGTACAATGCCCAGGTGTCAGTGGAGATGGAAGTGGCCAAGCCAGACCTGTCCGCAGCCCTCCGAGACATCCGTGTCCAGTATGAGAAACTGGCACACCGCAACCTCCAGTCAGCCGAGGAATGGTTCCGCAGCAAGGTGAGTGTGATGACAGAAGGCACCACCCGCAACACAGACAACGTTCGCAGTGCCAAAGACGAGGCCGGGGAGTACCGGCGCCTGATCAAAACACGGAACCTGGAGATTGAAGCATGCCGTGGGATGAACCAGTCCCTGGAGAATCAGCTACAAGAGGTGGAGGAGAAACAGAGTGCTGAGATCGCAGCCCTACAGGAATCAATTGGCCAGCTGGAGGACGAGTTGAGGACAACTAAGAATGAAATGGCCAGGTACCTGAAGGACTATCAAGACCTCTTGAACGTTAAGATGGCTCTGGACATCGAGATAGCAGCTTACAGGAAGCTGCTTGAAGGGGAGGAGAATCGCTTCAGTGCTGGAGGACCAGGGGAAATGTCCAGTGTCTACTCCCAAAGCCTGAGTGTTGCCCCATCATACAACCGCCCCATGTTCTTCATGCAGTCCAGCCTGAGCTCTGCTGCCCCCTACCTACGCATGTACAGCTCatcattctcctctgcagatgaGATTATAGCTGCCAGTCAAGCACAGCCTGCTGAGTCAAGTCCTcaggaagaagagggggaagaagaggagaagggagtcgaggaagcagaggaagaagaagaagagcaaAAAGCAGGTGATAATGGAGATATGGAGAAAGAGGAAGCAGGGGAGCCTAAAGAAAATGGAGAAGATGAAAGCCAAGAAGGAGGAGATGGAGTGGAGGATGGAGCCACTGAAACAGAAGAAGGGGATGATGAGGAAGAAAGCAAACAGGAAGTAGAAGTGGCAGAAGAAAAAGAGAAGCCAAAAGACCAAAATATTTAAATCAAGAATGAATGACACATTGATTGTTCCCTATCGAGGTGCTCTATAAATAGATCAGTTCAGTACAATCAATCAGGAAACCACTGTATATACAGCAGAGGCCTTTATGTTTGAGTTCAAATAAACAGTATGGCTGTACACTGAGTGAAGCAGAGCATGagagtgtatgcatgtgtgtgcctgCAAGGTGCTCTTCAGAACAATAAAAAGCAAATACCTGTATatgaaatacatcaaaataaattcAATATGATTGCTTAATTATTGGGTGCGAGAAACAAGAGAGAGCATGTGTGGAGTTTTGTGCGcaaatactgtattgtattagcCTGTGAAATATTTGTTTGAAGAACCTATGTGCTTTTCTGTCACCACAATATGCCTAtgagaacaccattgtgttcaATACTTGATTTGAAATGCCTTAGACCAAATCTTCTTTGTGGGATCCATGATGTACAGTACTGAACACAAATAAAGACATGAAACATGAA

Function

symbol description
nefl Enables identical protein binding activity and protein C-terminus binding activity. A structural constituent of cytoskeleton. Involved in axonal transport and neurofilament bundle assembly. Located in axon and neurofilament. Implicated in Charcot-Marie-Tooth disease (multiple); amyotrophic lateral sclerosis; and invasive ductal carcinoma. Biomarker of several diseases, including COVID-19; Lewy body dementia; autoimmune disease (multiple); neurodegenerative disease (multiple); and prion disease (multiple).

NR:

description
neurofilament light polypeptide

GO: NA

KEGG:

id description
K04572 NEFL, NF-L; neurofilament light polypeptide

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621429.2 True 2244 mRNA 0.51 4 55469984 55472817

Neighbor

gene id symbol gene type direction distance location
LOC110535990 dock5 coding downstream 9327 55427830 ~ 55460657 (-)
cenpe cenpe coding downstream 92308 55354594 ~ 55377676 (-)
LOC110535985 LOC106579877 coding downstream 127668 55308731 ~ 55342316 (-)
LOC110535982 LOC106579878 coding downstream 246926 55206344 ~ 55223058 (-)
LOC110535983 LOC106579879 coding downstream 263990 55192663 ~ 55205994 (-)
klhl22 klhl22 coding upstream 120594 55593411 ~ 55599727 (-)
nkx3-1 nkx3-1 coding upstream 390847 55863664 ~ 55864899 (-)
nkx2.7 nkx2-6 coding upstream 406063 55878880 ~ 55881623 (-)
stc1 stc1 coding upstream 422257 55895074 ~ 55920068 (-)
ido1 LOC106579858 coding upstream 523747 55996564 ~ 56014298 (-)
G995865 NA non-coding downstream 1303 55468450 ~ 55468681 (-)
G995849 NA non-coding downstream 45698 55424037 ~ 55424286 (-)
G995838 NA non-coding downstream 68271 55401513 ~ 55401713 (-)
G995830 NA non-coding downstream 80290 55389491 ~ 55389694 (-)
G995829 NA non-coding downstream 80703 55388995 ~ 55389281 (-)
G995883 NA non-coding upstream 103103 55575920 ~ 55577687 (-)
G995935 NA non-coding upstream 113239 55586056 ~ 55586295 (-)
G995969 NA non-coding upstream 168108 55640925 ~ 55641776 (-)
G995974 NA non-coding upstream 173635 55646452 ~ 55646715 (-)
G995977 LOC106580250 non-coding upstream 175379 55648196 ~ 55653383 (-)
ct030 LOC106579885 other downstream 345630 55122507 ~ 55124484 (-)
G991349 NA other downstream 3627462 51842066 ~ 51842522 (-)
specc1la specc1l other downstream 3946747 51492045 ~ 51523279 (-)
LOC118937364 LOC106585457 other downstream 4103567 51364250 ~ 51370212 (-)
G990411 NA other downstream 4425676 51040780 ~ 51044308 (-)
adgra2 LOC106579839 other upstream 1217534 56690351 ~ 56787685 (-)
G997269 NA other upstream 1466221 56939038 ~ 56941535 (-)
G997343 NA other upstream 1577158 57049975 ~ 57050306 (-)
LOC110536040 LOC106579832 other upstream 1617041 57088502 ~ 57096328 (-)
G998183 NA other upstream 2254478 57727295 ~ 57732883 (-)

Expression


Co-expression Network