LOC118937389


Basic Information

Item Value
gene id LOC118937389
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55481198 ~ 55488780 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118937389
ATGGGAGAGAGCCTCCTTGCCATGTACAGACATCAGACAACCTGCGAGCCACCATGCCCAAGCCTGTGCCGCAGGATCAACCTGTCCCAGTACCGCAACCCCAACTGCCTCCAGGCCTTGCCTCCTGAGCCCTGCCCTCCTCCTGTCAGTGAGTTCCAGACCATCCCCAGCAGCAGCCCCAGCATCTCCCTGCCTCCACTCCCTGAGCAATCACCACtgtcccagcccagccctctggTTCAGATCACAGACTACAGCCCCCTCTGTTGGCCCCTGAGAGGAGACACTGCCAAGCGCCGCTCAGGTCGGGTCATAAACACCAAGTGCAAGGAGGAGAAGATCGACTTCCAGGAGCTGCTGTTCAAAGACCTACCATCCAGACTGAAGAAGTTTGACCTTGAGGAAAATGATGAGAGCCTGAGTAACCTGGAGGCCCAGTGTGAAATCAAGCAGGACTTCCAGCTGCTCCATGGCACAAGCTGCATGCCTTTCAGACTACTGAATACATGGAATCAGCTGGGGAACCTGTTTGAGGAGAACTGGGTGGCTGTGGTGGTGCGTGTTTCCTTGCTCAAGGCATGCTTCTTGGCCCTGCAAGGAGACCTGGAACAGGCCCTGGAGAGCTATGACGTGTGTGCAGGCATGCTGCAGAGATTCACGCACAGACCACAGAGGAGGAAAGGTACACCATCTACCTGCCCAACCTGCGTGCAGATGCAGCCATCTCGGTGGAGGAGATTGCTCTAACACCCCCATTCTGCCCTCCTCCCTGATGCTGCTCAACCTGGCCCATGAGTACCTGGGCCGCCGCTCCTGGTGCTGCAACTCAGATGGATCTCTGTTCAGGTGCTATGTGAGTCGGTCAACAGAGTTGAGATTGTGTGGACATTCTCTGTATTTGTTTTCCTATGATATGGTTTGAATTAGTTTCTAATATCTTTCAAAGTATTTGTCAAAGTTTAATCAGGATAGAACTAACCTCATTGTTGTATTCATGTTCATGGTTCGTGTTCTGGAGAAAGAGGCGTCTCCCTCATCCCTACAAAGATGAGATGGGCGTTGAGCAGTGCTTCTACTGCCTGTATGCTTACCCCAGCAAGAAGATCATGGCCCGTTATCTGGAGGAGCACTCTGCTCAACAGGTCAAACACCCAGCCCTcttaatgttatattactgactgtCAATCTTTCAATGCCTTTCACATATCTGAGGATTAGCTAACAGAGATCATGTAATGTGTTCAACTGGCCACTAGGTGGTAGTCAATTCCACATTAGGTTTTTTACTCACTGGGATTGGCTTGTAGTGTAACTGTGATACGCAGTAATTGCATGATGAATAGACTGTTCCAAAGGGACAAGGTTCATTAGTTAATGAATGCAGCCCCCCGACTAATTAACTACTGGTTGGTCCACTGAGTCATACGACCCAGGAACTCCACTCGAGCAGGTCAATACAGGAGGAAGAAAGCAATTGATTCACTTTCAGGGAGTTTGAATGAGATTAATTATCTGACTGCCTCTGCATCAGAATGTACCAGCCTGTGCTGTTAGTCCCTTATCATGGGAATAGTTAGTCCCTTATCATGGGAATCACCAGGGTTTCACTTAGGAAGAGTTGAATCTTAGGGCAAACTCTTTGGTGGCGAGTTTtaaaaagtgtgtgtgcatgcgtgtgttagTACTAGGATTTTTTTTAACAGTACAATAAATGTTTTGCTTATCATCATAACTAACTGTGTTTTTCTAAGAAGAGCAGGTGGAACTCCTTTGGAGCCACGCCCTCTTCATGTTCCAGTACTTTAATCCCAAGAGTACCTCAGTTTGACAGCTACAAGATAAGCACGGTGTCTTCTGACCTGGCCAACCTGCTGAAAAGGATCTCTGGCATTGTCCTACAGTGACACTCCCATCCTCACTATTGATGAGGTGTCAGCCTACATCGAGTGCACGGctggaatcaaatcaaagtttatttgtcatgtgcaccgaatacaacaggtgtgggtggaccttacagtgaaatgctaaccaatagtgcaaaaaaggtatttggtgaacaatgggtaagtaaagaaataaaaacaacagtaaaaagacagtgaaaaataacagcagtgaggctgtatacagtagcaaggctataaaagtagtgaggctacatacagac

Function

NR:

description
LOW QUALITY PROTEIN: calcineurin-binding protein cabin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118937389 True 2170 mRNA 0.48 6 55481198 55488780

Neighbor

gene id symbol gene type direction distance location
LOC110535989 LOC106579874 coding upstream 59034 55412375 ~ 55422164 (+)
LOC110535988 LOC106579875 coding upstream 93602 55383426 ~ 55387596 (+)
ddx51 ddx51 coding upstream 98914 55377683 ~ 55382284 (+)
adra1a adra1a coding upstream 324649 55136414 ~ 55157272 (+)
LOC110535979 LOC106579884 coding upstream 405392 55072874 ~ 55075806 (+)
LOC110535064 cabin1 coding downstream 882 55489662 ~ 55577699 (+)
tbx16 LOC106579871 coding downstream 98584 55587364 ~ 55590671 (+)
LOC110535995 LOC106580250 coding downstream 141698 55630478 ~ 55650138 (+)
LOC110535996 LOC106585571 coding downstream 187356 55676136 ~ 55680687 (+)
LOC110535997 LOC106579866 coding downstream 195063 55683843 ~ 55690131 (+)
G995314 nefl non-coding upstream 10103 55469985 ~ 55471095 (+)
G995327 dock5 non-coding upstream 44998 55433993 ~ 55436200 (+)
G995323 NA non-coding upstream 51013 55428343 ~ 55430185 (+)
G995322 NA non-coding upstream 55304 55425669 ~ 55425894 (+)
G995290 NA non-coding upstream 91890 55388893 ~ 55389308 (+)
G995368 NA non-coding downstream 7006 55495786 ~ 55498344 (+)
G995377 NA non-coding downstream 42720 55531500 ~ 55569256 (+)
G995402 NA non-coding downstream 108614 55597394 ~ 55599032 (+)
G995436 NA non-coding downstream 147395 55636175 ~ 55636374 (+)
G995268 NA other upstream 124082 55355201 ~ 55357116 (+)
slc20a1a s20aa other upstream 437789 55036382 ~ 55043511 (+)
G993738 NA other upstream 1254735 54226131 ~ 54226463 (+)
G993612 NA other upstream 1455144 54025768 ~ 54026054 (+)
G992601 fzd10 other upstream 2031556 53446507 ~ 53449642 (+)
G995364 NA other downstream 29929 55518709 ~ 55519174 (+)
G995607 NA other downstream 514074 56002854 ~ 56004867 (+)
LOC110536010 LOC106579856 other downstream 539391 56028141 ~ 56037300 (+)
LOC110536021 LOC106579845 other downstream 897739 56386314 ~ 56434657 (+)

Expression


Co-expression Network