tbx16 (LOC106579871)


Basic Information

Item Value
gene id tbx16
gene name LOC106579871
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55587364 ~ 55590671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936318.1
ATGCAGTCCATCAGAGACATGAAGTCCAACTTTAttgctccaccctcctcctctattCCCGGTGGTCCCGACGCCTATCACCAAGGCAACATCAGGATGACTCTGGAGGACCCAGAACTCTGGAAGTCTTTCCATGAAATTGGAACAGAGATGATTATCACTAAACCGGGCAGGAGAATGTTTCCACACTGTAAAATCAACCTTTCTGGGCTGATGCCTTGTTCCAAGTACATCTTGCTGGTTGACATGGTTCCTGTGGATGGTTTCAGGTATAAGTGGAATAAAGAGAAATGGGAAGTGGCTGGGAAAGCAGAGCCACAGCCCCCTTGCCGGACGTACCTGCACCCAGACTCTCCAGCCCCTGGGAGCCACTGGATGAAACAGACCGTGTCCTTCCTCAAGCTCAAGCTTACCAACAACACCCTAGACCAACATGGCCATATCATTTTGCACTCCATGCATCGCTACCACCCGCGCTTCCACATTGTCCAGGCAGACGACATGTACAGTGTACGCTGGAGTGTATTCCAGACCTTTACCTTCCCTGAGACCTCCTTCACCTCCGTCACTGCTTACCAGAACACTAAGATAACCAAGCTGAAAATCGACCACAACCCATTTGCGAAAGGCTTTAGAGACGAAGGAACTAATACAAAAAGGCGCgctaacagaaacccagcctgccCAGAGAATAAAGCAAAGAAAATTGATTGTCTAAGCAGAGAGTCAGATGAGGACAGTCCTCCTGACTTCCCCAGGTCATCATTTGAAGGATACGAAGGAGAGCAGGCAGAACTCCCCAAAACCAAAGAGGAGGAAGTGGTGAAAGAGGAACGCTACTCCCCCTGGGGGCCTGAGAGGGAGCATGGCCACCACGTCCGGACAGATTCACCCCCTGGACCTGACGCCAGAGAAATGTACAATGCAGAGCAGCTAGTACCAGCCCCAGCTTCATACCAGCCTTACAGGTTCCATGAATACGGGaagtctccatctccctcctccagcGTAGGCAGCAGCAACGGGGGTTCTGGACGGGCCAGCTTTGAGTCCAGAGTCTCTGATGTAGCCACAGTCCCAGAGCATGAGGCCTCCAAGCCCTCTACCCATGATATTGGACCATCTCCCTGTGGCACCCAGCCCTCTGCAGGACATCACCAGGACTACACAGGGGTGCTCAACATGGCCCAGGCAGGCAAGCCAGGGGTCCTCAGCCATCACATTTACACCCCTTACAGCACCGAGCAGACCCTGGGCCAGTGGAGCGGCCCCAGCCCCGTCCAGTACCCTCCCCCTCACCACCTGCCCTCTGACTACAGTACCCCGGCTGTGCACCACGGATATCACCATGGCAATGTGGCTGAGTGGAGCCAGTACCCACTCTTCTCTTACTCGTGCTGGTGAAACCATTTCCTCAGTTTCTCCCAAAAGAGAAGGACTGCAGTCTCACAAGTGACTCAGCGAGACCTCATAAATGCTACTATGCTGTCATACCTGTGTTTCCTCTGTCCCAAGTCCAGCACCACACCCTGACTGCTGATCCAGAGCTCACAGCCATGCTACCGTATGCTGGGGCTGAAAGAGAAGGACCTGGGTCAGGAGAAATGCCAACCAGCAGAGAGAATAACGGAGTGGAACAGAGACAATATACTTCAGAATGACTTACCAGAGTAGAGGTGTGGACTGGTCTGATATCACAACTGGCTTTAGGCCTAAGGCCTGAAAAATGTATGCGTTCCTCCCAGTGAAATGTATGTTAATTGCTGAATTGTCTATTTATTTCGTGTTTGGACTTCGTTTCTCCCTGGTAaatatttttgtaaaaaataaaaacattttgtgtGTAATAAATTGCTTTACTGATATGTTAATGTCACCTGTATGGAATAAAAAAAAAGTTCTAACTGTTTTTCACTGTTTTCTTCAAAGCTAATGAAGCATTCATTTCTTGGGAGCCTGGTGCATTATAGTGCATGACAATACA
>TU1132760
TGATTGTCTAAGCAGAGAGTCAGATGAGGACAGTCCTCCTGGTATTGGATTTCACCACTTGGTGACCAAATTACTCATCCCTTCATGTAGAAATAGTTCTTCCCTGAGCTTAGTGGGTCTGATGTCATGTATGTTTTTCAGACTTCCCCAGGTCATCATTTGAAGGATACGAAGGAGAGCAGGCAGAACTCCCCAAAACCAAAGAGGAGGAAGTGGTGAAAGAGGAACGCTACTC
>TU1132761
CTTACTCGTGCTGGTGAAACCATTTCCTCAGTTTCTCCCAAAAGAGAAGGACTGCAGTCTCACAAGTGACTCAGCGAGACCTCATAAATGCTACTATGCTGTCATACCTGTGTTTCCTCTGTCCCAAGTCCAGCACCACACCCTGACTGCTGATCCAGAGCTCACAGCCATGCTACCGTATGCTGGGGCTGAAAGAGAAGGACCTGGGTCAGGAGAAA

Function

NR:

description
PREDICTED: T-box-containing protein TBX6L

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936318.1 False 1984 mRNA 0.50 9 55587364 55590671
TU1132760 False 235 lncRNA 0.46 1 55589182 55589416
TU1132761 True 218 lncRNA 0.51 1 55590075 55590292

Neighbor

gene id symbol gene type direction distance location
LOC110535064 cabin1 coding upstream 9665 55489662 ~ 55577699 (+)
LOC118937389 NA coding upstream 98584 55481198 ~ 55488780 (+)
LOC110535989 LOC106579874 coding upstream 165200 55412375 ~ 55422164 (+)
LOC110535988 LOC106579875 coding upstream 199768 55383426 ~ 55387596 (+)
ddx51 ddx51 coding upstream 205080 55377683 ~ 55382284 (+)
LOC110535995 LOC106580250 coding downstream 39807 55630478 ~ 55650138 (+)
LOC110535996 LOC106585571 coding downstream 85465 55676136 ~ 55680687 (+)
LOC110535997 LOC106579866 coding downstream 93172 55683843 ~ 55690131 (+)
LOC110535066 gnrh1 coding downstream 100081 55690752 ~ 55691740 (+)
ankrd39 ankrd39 coding downstream 101119 55691790 ~ 55706758 (+)
G995377 NA non-coding upstream 18108 55531500 ~ 55569256 (+)
G995368 NA non-coding upstream 89020 55495786 ~ 55498344 (+)
G995314 nefl non-coding upstream 116269 55469985 ~ 55471095 (+)
G995327 dock5 non-coding upstream 151164 55433993 ~ 55436200 (+)
G995323 NA non-coding upstream 157179 55428343 ~ 55430185 (+)
G995402 NA non-coding downstream 6723 55597394 ~ 55599032 (+)
G995436 NA non-coding downstream 45504 55636175 ~ 55636374 (+)
G995430 NA non-coding downstream 61289 55651960 ~ 55652972 (+)
G995462 NA non-coding downstream 117711 55708382 ~ 55709298 (+)
G995500 NA non-coding downstream 186868 55777539 ~ 55844504 (+)
G995364 NA other upstream 68190 55518709 ~ 55519174 (+)
G995268 NA other upstream 230248 55355201 ~ 55357116 (+)
slc20a1a s20aa other upstream 543955 55036382 ~ 55043511 (+)
G993738 NA other upstream 1360901 54226131 ~ 54226463 (+)
G995607 NA other downstream 412183 56002854 ~ 56004867 (+)
LOC110536010 LOC106579856 other downstream 437500 56028141 ~ 56037300 (+)
LOC110536021 LOC106579845 other downstream 795848 56386314 ~ 56434657 (+)
LOC110536038 LOC106579834 other downstream 1461438 57044708 ~ 57072429 (+)
G997824 NA other downstream 2196797 57787468 ~ 57789171 (+)

Expression


Co-expression Network