LOC110535996 (LOC106585571)


Basic Information

Item Value
gene id LOC110535996
gene name LOC106585571
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55676136 ~ 55680687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621439.2
AACCCTCTAATCGTTGCACAGAGTGGGCGGATAATAGCGGAGCCTATCTAGCTATACATTTATATCTGCATCGTTGCGCCACATAACAAGGCGAAATCAGCTAACTACAATGCAAGGACAAAAGGATTCATAAAGGACCTATATCTATAAGGTTATCACCATGGAGTCCTACGATATAATAGCAAATCAGCCTGTGGTTATTGATAATGGCTCCGGTGTTGTTAAAGCTGGTTTTGCAGGAGACCAGATCCCCAAATACTGCTTCCCAAACTATGTGGGTCGTCCAAAGCATGTTCGGGTGATGGCAGGTGCTCTGGAAGGAGATCTCTTCATTGGCCCAAAAGCAGAGGAACACAGGGGGCTCCTGTCTGTGCGGTACCCAATGGAGCACGGCATTGTGAAGGACTGGAATGACATGGAGCGCATCTGGCAATATGTGTACTCTAAGGAGCAACTACAGACCTTCTCTGAAGAGCATCCTGTGTTGCTGACAGAGGCCCCCTTGAACCCAAGTAAAAACCGGGAGCGTGCAGCAGAGGTGTTTTTTGAGACCTTCAATGTACCAGCGCTCTTTATCTCCATGCAGGCAGTATTAAGCTTATATGCCACAGGCCGGACAACAGGAGTGGTGCTGGATGCTGGTGATGGGGTAACCCATGCTGTGCCCATCTATGAAGGCTTTGCCATCCCTCACTCTATCATGCGGGTCGACATTGCTGGGCGTGATGTTTCACGCTACCTACGCCTGCTACTGCGCAAGGAAGGCTATGACTTCCACACCTCAGCTGAGTTTGAGGTTGTGCGCACTATCAAAGAGAGAGCATGCTACCTCTCACTGAACCCACAAAAAGATGAGACCTTGGAGACAGAGAAGGTGCAGTACACTCTTCCTGATGGCAGCACATTGGATATTGGCCCTGCTCGGTTCCGAGCCCCAGAGCTCCTCTTCCGTCCAGACCTGATAGGGGACGAGAGTGAAGGAATCCACGAAGTTCTTGCTTTTGCCATTCAGAAGTCTGACATGGACCTGCGACGTACACTCTTTTCCAACATTGTTCTCTCTGGGGGCTCCACACTCCTCAAAGGTTTTGGTGACCGGTTGTTAAGTGAAGTAAAAAAGTTGGCACCTAAAGATGTGAAAATAAAGATCTCTGCACCTCAAGAACGACTCTACTCCACGTGGATAGGGGGCTCCATCCTTGCGTCACTGGACACCTTCAAGAAGATGTGGGTTTCAAAGAAGGAGTATGAGGAAGACCGAGCACGTGCCATCCATCGGAAGACATTCTGAAGAGACTGGTGGTGCTCCTATTCTGCCCCAAAAAAGTCCACCAACTAGTCCACCACACCCCCTGATGGGGAGAGCCCATGGCTCCCTATGGCATGCCTTCTACGGACTCCCCTACACGCCATATGACGGGGAAACTGGCCAGGACTGGCAAAGTGTTGACCAGCATTTACCAGAAAGACCCAGAACCTGTCCCAATGACATGGCTTTAAGTTGCATCTCTTGATATTgtggattttatttttgttttgtttaaacaCATTCAAGGCTAAGCTGCATTGCTTGATTCAAATTCTGTATTTATTCTGCTGTGTGTTATGCCCCATAAAATCCATCACTTAAATGACAATGAAGGTGAATGTTCCGCTTTACTTTGATAGATTCAATTAAGACTTGTTTTTACCTTTGGGCGTGGTTACTGTGGCACATTAAACAGTGTGCAAAGATACCTTAAGAACTAGTTGAAGTTGTCTCCTTATTTCCCACAGTCTGAATGGAGACAGTTTAAATTAATTGTTAAAATATGACCCAGTGTACTGTAACTTACACCGACTCCATTTAAAAGTGTTGCTTCATATTTAACTGTTGAAGATGAGACACTGATGGATGAAAAAAATGTACAGAtgttgcaatttctgaggataACTTTCCCTTATTTCAAACCCAAGTGGATCTAAATTGTATTAAATATTTGATCGGTTCATCATTTAACTCAACATTGTAAGGGGACTAATATAAAATCTTGAGTGGACGATGAGTTAAAAGCACTGTCACATTGGAGAATATTATCCAAACTGGTATGGTTTACTTCCTCTAATTAGTCTAAACTTTTAAACTGCACCAAAACGTATGCAGACATGATAATGGGTTGGTTGTCATGTTTTCTGCTGGATATTTGCAATCTAAACCGAATTGGAATTACTGACTTCATTTTATATCAAAAAAGGGTATATTTTTGTTTCAAGAGGAACCATGTGACCATATCCTGCTCGTATAATGACTCCTTCAAGCAAATACTAACACTAAAATTAACAGTATTGCTGAAAGAAATGTATTTCATTACAATAAATTTGTGCACTCTGCTGG

Function

NR:

description
beta-centractin

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K16575 ACTR1, ARP1; centractin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621439.2 True 2374 mRNA 0.44 11 55676136 55680687

Neighbor

gene id symbol gene type direction distance location
LOC110535995 LOC106580250 coding upstream 25998 55630478 ~ 55650138 (+)
tbx16 LOC106579871 coding upstream 85465 55587364 ~ 55590671 (+)
LOC110535064 cabin1 coding upstream 98437 55489662 ~ 55577699 (+)
LOC118937389 NA coding upstream 187356 55481198 ~ 55488780 (+)
LOC110535989 LOC106579874 coding upstream 253972 55412375 ~ 55422164 (+)
LOC110535997 LOC106579866 coding downstream 3156 55683843 ~ 55690131 (+)
LOC110535066 gnrh1 coding downstream 10065 55690752 ~ 55691740 (+)
ankrd39 ankrd39 coding downstream 11103 55691790 ~ 55706758 (+)
fgfr1a LOC106579865 coding downstream 42065 55722752 ~ 55763695 (+)
lgi3 LOC106579864 coding downstream 100654 55781341 ~ 55796866 (+)
G995430 NA non-coding upstream 23164 55651960 ~ 55652972 (+)
G995436 NA non-coding upstream 39762 55636175 ~ 55636374 (+)
G995402 NA non-coding upstream 77104 55597394 ~ 55599032 (+)
G995377 NA non-coding upstream 106880 55531500 ~ 55569256 (+)
G995462 NA non-coding downstream 27695 55708382 ~ 55709298 (+)
G995500 NA non-coding downstream 96852 55777539 ~ 55844504 (+)
G995466 NA non-coding downstream 124601 55805288 ~ 55806077 (+)
G995531 NA non-coding downstream 177084 55857771 ~ 55858007 (+)
G995540 NA non-coding downstream 189421 55870108 ~ 55870444 (+)
G995364 NA other upstream 156962 55518709 ~ 55519174 (+)
G995268 NA other upstream 319020 55355201 ~ 55357116 (+)
slc20a1a s20aa other upstream 632727 55036382 ~ 55043511 (+)
G993738 NA other upstream 1449673 54226131 ~ 54226463 (+)
G995607 NA other downstream 322167 56002854 ~ 56004867 (+)
LOC110536010 LOC106579856 other downstream 347484 56028141 ~ 56037300 (+)
LOC110536021 LOC106579845 other downstream 705832 56386314 ~ 56434657 (+)
LOC110536038 LOC106579834 other downstream 1371422 57044708 ~ 57072429 (+)
G997824 NA other downstream 2106781 57787468 ~ 57789171 (+)

Expression


Co-expression Network