XLOC_028423 (slco1c1)


Basic Information

Item Value
gene id XLOC_028423
gene name slco1c1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2674898 ~ 2727573 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055184
AATCCATCCAGCGGCTTCAAAGCAGAACAAACTATCTCACCTctcaggaagaagaagaaaaaatacaacTACAAGACTGACGTCAAAAAGATTAAACTGTTCGGACGCATCGAGCCGAACGCAGCACAATCGGATGTGAGTGGAAGTGTTAGGAAACACCTCCAGGACCAAGTGCCTTTTCCTCGTCTCCGGCAAGCCTGTGGGAAGTTTtttctccctcacacacacatgatCTGCTCCAAACACACTCGTTTTGGACCACAGGGGACTCTTATGTATCCATAGATTGTATAACAGACGCAATCGGGATCGGATATACGCGTACGGAGCGCGCGGTTTGGTGAGTAGGAGTGCATGCATAAATGCCAAGGAACTGCATGAAAGAGTCATCATCTCCCAAGGAAAACGAGATCTTTCTGTGGAGGATGGATCTGCCCAACAAGGAAAGACGGTCACCGGAAAACAGCCCAAGCTCCAGTCGGCGCTGTTGCTCAAGCTTCAAGATGTTCCTCGTGGCCTTGTCCTTCGCCTATTTCTCCAAGGCTTTATCCGGGAGCTATATGAAAAGCACAATAACTCAGCTGGAAAGACGCTTCGACATCCCCAGTTACTTAATAGGTGTCATTGACGGCAGCTTTGAAATAGGCAACTTGTTAGTGATCGCCTTTGTGAGTTACTTTGGTGCCAAACTTCACCGTCCGAAAATCATCGCCATCGGCTGCCTGTTGATGTCACTCGGGACGTTTCTCATCGCTTTGCCCCATTTCATAATCGGCCGATATAAGTTTGAGACGTCGATCCGCTTGTCTGTAAACTCCAGCAGCAGCCTCTCTCCGTGTTCACTGAGCTCTGCTGAACCCAGCACATCTTCAGTGCCCAGCACAGGCTGTGAACACGAGTCTCGGTTGTCGATGTGGATTTATGTGTTTCTGGGGAATATCCTGCGTGGGATTGGAGAGACTCCAGTGCAGCCGCTGGGAATCTCCTACATCGATGATCACGCTCTGGAGGAGAACGCAGCTTTCTACATTGGATGTGTCCAGACTATCTCCGTCATCGGGCCGGTTTTCGGGTATCTGCTGGGCTCCGTCTGTGCCAAGATATACGTGGACATTGGGTTTGTCAACATGGAGAGCATCAGCATCACTCCAGGAGACGCGCGCTGGGTCGGCGCCTGGTGGCTAGGCTACCTGATTGCCGGATTCATTACCCTGCTTTCAGCCGTGCCCTTCTGGTTCCTGCCCAAGTCTTTGCCACTGCCAGAGAGAAGACTGAGCAAATACTCTCCGGAGCGCAACAGCTTCATCAAAGACTCGGCTCTGCTGGAGCACAAATACCAGGCAGACGAGCCGGCTAACTTCCTGGAAATGGCCAAAGACTTTTTGCCCACACTGAGGTCTCTCCTGGGAAACCCGGTCTACTTTCTGTATCTGTGCGTGACCATCATCCAGTTCAACTCACTGATCGGCATGGTCACATATAAACCAAAATACATCGAGCAGCATTACGGACAGTCCGCATCCAAAGCCAACTTCCTCATGGGAGTTATCAACATCCCAGCCGTAGCCTTGGGAATGTTTTCGGGCGGCGTGATCATGAAGAAGTTCAAGCTGAGCATCATGGGAGCAGCCAAGTTTGCGTTGGGAACGTCTCTGCTGGGCTATTTTCTGTCTCTCTTCTTCTTCAGCATGGGCTGTGAAAACGCCAGCGTGGCTGGAATCACCATGTCCTACAACGGGACGGAGAGTCTGTTTATGGCGGACGGCTCTCTGCGAGCGTCCTGCAACGCAGCCTGTCATTGTCCTGAAAAAAACTGGGACCCGGTGTGCGGAGAAGACGGCCTCACCTACGTGTCCCCGTGCCTGGCTGGATGCCGGACGTCCCACGGCTCAGGAATGGACACGGTGTTTGAGCAGTGCAGTTGTATAGGAGTGGGGAATCAGACAGCCACCGCAGGCCAATGCAACAACAGAGAAAGCTGCCATCGCATTTTCCCGTACTTCCTGGCTCTGTCCGTCATCACTTCCTTCATTATATCACTAGGAGGAACGCCAGGATACATGCTGCTCATCAGATGCATCAAACCTCAGCTGAAGTCTCTAGCGTTGGGTTTTCACACTCTGACCACACGTACTCTGGCAGGGATTCCAGCTCCGATATATTTCGGGGCCATCATCGACACCACCTGTCTGAAATGGGGACACAAGAAGTGTGGTGGAAGAGGAGCCTGTCGAATCTACAACACCGCGGCCTACAGCGTATCtgggcctgacgttgggtttGCGCACCGTTTCCTTCTTCCTGTGTATCCTGGGGTTGTTGGTTTTGCGACGGCACGTTCAGAAGCAGGAGCGCAGCACAATGGTGAACGGAGGATCAGCGGCAGCCGGAGAACTGCAGGCGCTCAGAAAAGAAGAAAACAACAGCTGTAACTCAGAGCAGTGTCCACAAAACACAGATTATGACCCGGAGCGGGAGACGCGACTGTGACACTCgcattgagagaaaaaaaaaacggccGCGACGCCTGATTTTATGAGTTCCACTTTCTATCGAACCCATGTAAATGATgtgaaatactgaaaaaaatctgttgttttgatATAGTAGAACTATTTCTTGAATGTACATGATGTTTGGGTTAAAAAAAGATGAAGAATGTCTTAAAAACTACCTAATCTGTTTGAAGATGCTTTAATAAGTGTCTTAACGTCAAGAC
>TCONS_00055185
CCGGGTTACTGTGGGTAAAACACTCTCAGTAATGCTGGACTGATCTGATGGAAACTCCTGCTGGTGTTAGTGGTGGTTAGATGCATCAAACCTCAGCTGAAGTCTCTAGCGTTGGGTTTTCACACTCTGACCACACGTACTCTGGCAGGGATTCCAGCTCCGATATATTTCGGGGCCATCATCGACACCACCTGTCTGAAATGGGGACACAAGAAGTGTGGTGGAAGAGGAGCCTGTCGAATCTACAACACCGCGGCCTACAGGATAGCGTATCtgggcctgacgttgggtttGCGCACCGTTTCCTTCTTCCTGTGTATCCTGGGGTTGTTGGTTTTGCGACGGCACGTTCAGAAGCAGGAGCGCAGCACAATGGTGAACGGAGGATCAGCGGCAGCCGGAGAACTGCAGGCGCTCAGAAAAGAAGAAAACAACAGCTGTAACTCAGAGCAGTGTCCACAAAACACAGATTATGACCCGGAGCGGGAGACGCGACTGTGACACTCgcattgagagaaaaaa
>TCONS_00055186
GCGGCTTCAAAGCAGAACAAACTATCTCACCTctcaggaagaagaagaaaaaatacaacTACAAGACTGACGTCAAAAAGATTAAACTGTTCGGACGCATCGAGCCGAACGCAGCACAATCGGATGTGAGTGGAAGTGTTAGGAAACACCTCCAGGACCAAGTGCCTTTTCCTCGTCTCCGGCAAGCCTGTGGGAAGTTTtttctccctcacacacacatgatCTGCTCCAAACACACTCGTTTTGGACCACAGGGGACTCTTATGTATCCATAGATTGTATAACAGACGCAATCGGGATCGGATATACGCGTACGGAGCGCGCGGTTTGGAGTGCATGCATAAATGCCAAGGAACTGCATGAAAGAGTCATCATCTCCCAAGGAAAACGAGATCTTTCTGTGGAGGATGGATCTGCCCAACAAGGAAAGACGGTCACCGGAAAACAGCCCAAGCTCCAGTCGGCGCTGTTGCTCAAGCTTCAAGATGTTCCTCGTGGCCTTGTCCTTCGCCTATTTCTCCAAGGCTTTATCCGGGAGCTATATGAAAAGCACAATAACTCAGCTGGAAAGACGCTTCGACATCCCCAGTTACTTAATAGGTGTCATTGACGGCAGCTTTGAAATAGGCAACTTGTTAGTGATCGCCTTTGTGAGTTACTTTGGTGCCAAACTTCACCGTCCGAAAATCATCGCCATCGGCTGCCTGTTGATGTCACTCGGGACGTTTCTCATCGCTTTGCCCCATTTCATAATCGGCCGATATAAGTTTGAGACGTCGATCCGCTTGTCTGTAAACTCCAGCAGCAGCCTCTCTCCGTGTTCACTGAGCTCTGCTGAACCCAGCACATCTTCAGTGCCCAGCACAGGCTGTGAACACGAGTCTCGGTTGTCGATGTGGATTTATGTGTTTCTGGGGAATATCCTGCGTGGGATTGGAGAGACTCCAGTGCAGCCGCTGGGAATCTCCTACATCGATGATCACGCTCTGGAGGAGAACGCAGCTTTCTACATTGGATGTGTCCAGACTATCTCCGTCATCGGGCCGGTTTTCGGGTATCTGCTGGGCTCCGTCTGTGCCAAGATATACGTGGACATTGGGTTTGTCAACATGGAGAGCATCAGCATCACTCCAGGAGACGCGCGCTGGGTCGGCGCCTGGTGGCTAGGCTACCTGATTGCCGGATTCATTACCCTGCTTTCAGCCGTGCCCTTCTGGTTCCTGCCCAAGTCTTTGCCACTGCCAGAGAGAAGACTGAGCAAATACTCTCCGGAGCGCAACAGCTTCATCAAAGACTCGGCTCTGCTGGAGCACAAATACCAGGCAGACGAGCCGGCTAACTTCCTGGAAATGGCCAAAGACTTTTTGCCCACACTGAGGTCTCTCCTGGGAAACCCGGTCTACTTTCTGTATCTGTGCGTGACCATCATCCAGTTCAACTCACTGATCGGCATGGTCACATATAAACCAAAATACATCGAGCAGCATTACGGACAGTCCGCATCCAAAGCCAACTTCCTCATGGGAGTTATCAACATCCCAGCCGTAGCCTTGGGAATGTTTTCGGGCGGCGTGATCATGAAGAAGTTCAAGCTGAGCATCATGGGAGCAGCCAAGTTTGCGTTGGGAACGTCTCTGCTGGGCTATTTTCTGTCTCTCTTCTTCTTCAGCATGGGCTGTGAAAACGCCAGCGTGGCTGGAATCACCATGTCCTACAACGGGACGGAGAGTCTGTTTATGGCGGACGGCTCTCTGCGAGCGTCCTGCAACGCAGCCTGTCATTGTCCTGAAAAAAACTGGGACCCGGTGTGCGGAGAAGACGGCCTCACCTACGTGTCCCCGTGCCTGGCTGGATGCCGGACGTCCCACGGCTCAGGAATGGACACGGTGTTTGAGCAGTGCAGTTGTATAGGAGTGGGGAATCAGACAGCCACCGCAGGCCAATGCAACAACAGAGAAAGCTGCCATCGCATTTTCCCGTACTTCCTGGCTCTGTCCGTCATCACTTCCTTCATTATATCACTAGGAGGAACGCCAGGATACATGCTGCTCATCAGATGCATCAAACCTCAGCTGAAGTCTCTAGCGTTGGGTTTTCACACTCTGACCACACGTACTCTGGCAGGGATTCCAGCTCCGATATATTTCGGGGCCATCATCGACACCACCTGTCTGAAATGGGGACACAAGAAGTGTGGTGGAAGAGGAGCCTGTCGAATCTACAACACCGCGGCCTACAGGATAGCGTATCtgggcctgacgttgggtttGCGCACCGTTTCCTTCTTCCTGTGTATCCTGGGGTTGTTGGTTTTGCGACGGCACGTTCAGAAGCAGGAGCGCAGCACAATGGTGAACGGAGGATCAGCGGCAGCCGGAGAACTGCAGGCGCTCAGAAAAGAAGAAAACAACAGCTGTAACTCAGAGCAGTGTCCACAAAACACAGATTATGACCCGGAGCGGGAGACGCGACTGTGACAC
>TCONS_00055187
ATGCCAAGGAACTGCATGAAAGAGTCATCATCTCCCAAGGAAAACGAGATCTTTCTGTGGAGGATGGATCTGCCCAACAAGGAAAGACGGTCACCGGAAAACAGCCCAAGCTCCAGTCGGCGCTGTTGCTCAAGCTTCAAGATGTTCCTCGTGGCCTTGTCCTTCGCCTATTTCTCCAAGGCTTTATCCGGGAGCTATATGAAAAGCACAATAACTCAGCTGGAAAGACGCTTCGACATCCCCAGTTACTTAATAGGTGTCATTGACGGCAGCTTTGAAATAGGCAACTTGTTAGTGATCGCCTTTGTGAGTTACTTTGGTGCCAAACTTCACCGTCCGAAAATCATCGCCATCGGCTGCCTGTTGATGTCACTCGGGACGTTTCTCATCGCTTTGCCCCATTTCATAATCGGCCGATATAAGTTTGAGACGTCGATCCGCTTGTCTGTAAACTCCAGCAGCAGCCTCTCTCCGTGTTCACTGAGCTCTGCTGAACCCAGCACATCTTCAGTGCCCAGCACAGGCTGTGAACACGAGTCTCGGTTGTCGATGTGGATTTATGTGTTTCTGGGGAATATCCTGCGTGGGATTGGAGAGACTCCAGTGCAGCCGCTGGGAATCTCCTACATCGATGATCACGCTCTGGAGGAGAACGCAGCTTTCTACATTGGATGTGTCCAGACTATCTCCGTCATCGGGCCGGTTTTCGGGTATCTGCTGGGCTCCGTCTGTGCCAAGATATACGTGGACATTGGGTTTGTCAACATGGAGAGCATCAGCATCACTCCAGGAGACGCGCGCTGGGTCGGCGCCTGGTGGCTAGGCTACCTGATTGCCGGATTCATTACCCTGCTTTCAGCCGTGCCCTTCTGGTTCCTGCCCAAGTCTTTGCCACTGCCAGAGAGAAGACTGAGCAAATACTCTCCGGAGCGCAACAGCTTCATCAAAGACTCGGCTCTGCTGGAGCACAAATACCAGGCAGACGAGCCGGCTAACTTCCTGGAAATGGCCAAAGACTTTTTGCCCACACTGAGGTCTCTCCTGGGAAACCCGGTCTACTTTCTGTATCTGTGCGTGACCATCATCCAGTTCAACTCACTGATCGGCATGGTCACATATAAACCAAAATACATCGAGCAGCATTACGGACAGTCCGCATCCAAAGCCAACTTCCTCATGGGAGTTATCAACATCCCAGCCGTAGCCTTGGGAATGTTTTCGGGCGGCGTGATCATGAAGAAGTTCAAGCTGAGCATCATGGGAGCAGCCAAGTTTGCGTTGGGAACGTCTCTGCTGGGCTATTTTCTGTCTCTCTTCTTCTTCAGCATGGGCTGTGAAAACGCCAGCGTGGCTGGAATCACCATGTCCTACAACGGGACGGAGAGTCTGTTTATGGCGGACGGCTCTCTGCGAGCGTCCTGCAACGCAGCCTGTCATTGTCCTGAAAAAAACTGGGACCCGGTGTGCGGAGAAGACGGCCTCACCTACGTGTCCCCGTGCCTGGCTGGATGCCGGACGTCCCACGGCTCAGGAATGGACACGGTGTTTGAGCAGTGCAGTTGTATAGGAGTGGGGAATCAGACAGCCACCGCAGGCCAATGCAACAACAGAGAAAGCTGCCATCGCATTTTCCCGTACTTCCTGGCTCTGTCCGTCATCACTTCCTTCATTATATCACTAGGAGGAACGCCAGGATACATGCTGCTCATCAGATGCATCAAACCTCAGCTGAAGTCTCTAGCGTTGGGTTTTCACACTCTGACCACACGTACTCTGGCAGGGATTCCAGCTCCGATATATTTCGGGGCCATCATCGACACCACCTGTCTGAAATGGGGACACAAGAAGTGTGGTGGAAGAGGAGCCTGTCGAATCTACAACACCGCGGCCTACAGCGTATCtgggcctgacgttgggtttGCGCACCGTTTCCTTCTTCCTGTGTATCCTGGGGTTGTTGGTTTTGCGACGGCACGTTCAGAAGCAGGAGCGCAGCACAATGGTGAACGGAGGATCAGCGGCAGCCGGAGAACTGCAGGCGCTCAGAAAAGAAGAAAACAACAGCTGTAA
>TCONS_00055188
TCAAAAAGATTAAACTGTTCGGACGCATCGAGCCGAACGCAGCACAATCGGATGTGAGTGGAAGTGTTAGGAAACACCTCCAGGACCAAGTGCCTTTTCCTCGTCTCCGGCAAGCCTGTGGGAAGTTTtttctccctcacacacacatgatCTGCTCCAAACACACTCGTTTTGGACCACAGGGGACTCTTATGTATCCATAGATTGTATAACAGACGCAATCGGGATCGGATATACGCGTACGGAGCGCGCGGTTTGGAGTGCATGCATAAATGCCAAGGAACTGCATGAAAGAGTCATCATCTCCCAAGGAAAACGAGATCTTTCTGTGGAGGATGGATCTGCCCAACAAGGAAAGACGGTCACCGGAAAACAGCCCAAGCTCCAGTCGGCGCTGTTGCTCAAGCTTCAAGATGTTCCTCGTGGCCTTGTCCTTCGCCTATTTCTCCAAGGCTTTATCCGGGAGCTATATGAAAAGCACAATAACTCAGCTGGAAAGACGCTTCGACATCCCCAGTTACTTAATAGGTGTCATTGACGGCAG

Function

symbol description
slco1c1 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in bilirubin metabolic disorder. Orthologous to several human genes including SLCO1C1 (solute carrier organic anion transporter family member 1C1).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0043252 sodium-independent organic anion transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015347 sodium-independent organic anion transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-50 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in bilirubin metabolic disorder. Orthologous to several human genes including SLCO1C1 (solute carrier organic anion transporter family member 1C1).

Ensembl:

ensembl_id ENSDARG00000016749

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055184 False 2719 mRNA 0.50 15 2674898 2727573
TCONS_00055185 False 522 processed_transcript 0.52 4 2675106 2686090
TCONS_00055186 False 2480 mRNA 0.52 15 2675124 2727563
TCONS_00055187 False 2070 mRNA 0.53 14 2675185 2719128
TCONS_00055188 True 544 mRNA 0.49 3 2705703 2727491

Neighbor

gene id symbol gene type direction distance location
XLOC_028422 NA coding downstream 8028 2664168 ~ 2666870 (-)
XLOC_028421 cog5 coding downstream 37188 2548783 ~ 2637710 (-)
XLOC_028420 e2f7 coding downstream 129553 2530841 ~ 2545345 (-)
XLOC_028419 csrp2 coding downstream 148964 2511629 ~ 2525934 (-)
XLOC_028418 NA coding downstream 195178 2445757 ~ 2479720 (-)
XLOC_028424 pde3a coding upstream 25279 2752852 ~ 2868112 (-)
XLOC_028425 aebp2 coding upstream 195626 2923199 ~ 2945306 (-)
XLOC_028426 plekha5 coding upstream 220490 2948063 ~ 3145359 (-)
XLOC_028427 NA coding upstream 523201 3250774 ~ 3257564 (-)
XLOC_028428 NA coding upstream 578572 3306145 ~ 3308415 (-)
XLOC_028417 NA non-coding downstream 234723 2392072 ~ 2440175 (-)
XLOC_028408 NA non-coding downstream 695841 1915786 ~ 1979057 (-)
XLOC_028406 NA non-coding downstream 819127 1848660 ~ 1855771 (-)
XLOC_028430 NA non-coding upstream 664648 3392221 ~ 3405250 (-)
XLOC_028431 NA non-coding upstream 680138 3407711 ~ 3415152 (-)
XLOC_028432 CU928073.1 non-coding upstream 718438 3446011 ~ 3456102 (-)

Expression


Co-expression Network