LOC110535997 (LOC106579866)


Basic Information

Item Value
gene id LOC110535997
gene name LOC106579866
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55683843 ~ 55690131 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621440.2
CCAATGTTCAAGGTTGTCTTCTTGCTGTTTCGTCCCACTGTCAagtctgctagctagctacctctgGAGCATCCTTCTGGGGCTCATTGTTCTAGAATTAGTATTAAAGCTTATTACTAAGAATGAGAAGAGTTACTGTTTTTGTGAACGGGACGTCCAGAAATGGGAAGGTTGTAGCTGTGTATGGGACCTTGACTGACCTGTTATCTGTAGCAACCAATAAGTTGGGAATCAAAGCCTGTAATTTATACAATGGAAAAGGGGGTCTTATAGATGACATAGCGCTCATCAGGGATGATGATGTTTTGTATGTCTCAGAGGGAGACCCCTTTTTTGACCCACAGAATGATGTCAGGGCTAGAGACGATCGGCCTGGGGCACACACCGATTGGCTGACGCTTAATATTGGAGGGCGTCTCTTCACCACCACACGGAGCACCTTGGTCAGCAAGGAGCCAGAGAGCATGCTTGCTCACATGTTTCGGGAGAAGGCTGTATGGGGTAACAAGCAGGATGAATGTGGGGCTTACCTGATTGATCGCAGCCCAGAATACTTTGAGCCTATTCTTAATTACCTGCGACATGGCCAGCTCATTATCAATGAAGGAATCAATTTACTTGGGGTTTTGGAGGAGGCCCGTTTCTTTGGAATTGAGCAGCTTGCTGAGCAGTTGGAAGTAGCAATAAAGAATAACCAGACACCTGAGGACCACTCTCCCATCTCTCGCAAGGAGTTTGTTCGGTTTCTGCTGGCTACACCCACCAAATCAGAGCTCCGCTGTCAGGGACTTAATTTCAGTGGCGCTGATCTCTCTCGCCTCGACTTGCGCTACATCAACTTCAAGATGGCCAACCTGAGTCGCTGCAACCTGACACATGCCAACCTATGCTCTTCAAACCTGGAGCGCGCTGACCTGTCTGGGGCCAACCTCGATGGTGCTAACTTGCAGGGTGTCAAGATGCTCTGTTCAAATGCTGAGGGGGCGTCTCTCAAAGGATGCAATTTTGAGGACCCATCTGGACTCAAGGCCAACTTAGAGGGTGCCAATCTGAAAGGGGTTGACATGGAGGGAAGTCAGATGACCGGAATTAACCTGCGTGTGGCCACTCTCAAAAATGCTAAGCTGAAGAACTGTAACCTGCGGGGTGCCACTTTGGCAGGAACCGATCTTGAGAACTGTGATCTGTCTGGCTGTGACCTACAAGAGGCCAACTTGAGAGGGTCCAACGTGAAGGGGGCCATTTTTGAAGAGATGCTGACTGCATTGCACATGTCTCAGAGTGTTAGATAACTCTTCTGCACATTCCATCTGGGTTCAGGCTGGTTAATCTCATGGATGCCTGGCAAAGGTCTTCATTTGCCAGCCAATCCCACCCACCCCTAATATCAAGCTTCTTTGACCCTTGTGCAATACAGGTAGTTTTATGCACATCCCTGGCATTCCAGCTCATATACTAGCTTTAAATAATTTGCACTAGAGCACATTCAGGGATATTTGTTTAACTGTCTTTCCTTATTTTTCCCCAAAACCAAAATATTTCATGTATGTTTACTATTATGTCTGGATTCAATCCTACCTTATTAGTATTCTTTTAAATTCTAGATGTATACATACTTTCTTGATTATCTGAAAGTCAGATTATTAAACTATAAGTGCATGAAGGTTTAAAGTAACAATATAAGGGCATGGTGTGACTGTACATTCTTATCAATGTACTTAGTTTTATGTCAGATAGGCTTTATGATTAGGATAATGTTTTTTCTACGCCGAAGCCATACTGTAGCATGATAAAAATGGCAAAAGAATTTGCTGTTATTGCACCACCTAATTATGCTGTGTATTTCATTTTTCTTATAATAATGTGGCTGTTGAAACATAATTTCAAGGATGCAATGTAATCTTCATTGATAATCACTGAAGTCAGATGCTGCctgttgttttgtttggtgtTCTCTGTGAATCTACCtccttatttttttttaccactttCTGATTTATATCTAGTTCCATGCATTTCATGGTGGTTTTTGTCTCTTGTTGTATGAAAACCATTATTCATAATATCCAAATATGATAAGTAAATAATCAAAGTGAATAAGCTGTTTTTTAAGTGTTACTGTCATTTTCCAGCTTGTGGATCACCTAGTTGTATGAGGAAGATGGTTGTATAACAACACACCCATCACAATGAATTGCATATAATTCAATCATGTTTTGAAGTTTGCACAAATCTGTCTTAAATTAAACATTTTGTTCACTAA
>XM_036935829.1
CCAATGTTCAAGGTTGTCTTCTTGCTGTTTCGTCCCACTGTCAagtctgctagctagctacctctgGAGCATCCTTCTGGGGCTCATTGTTCTAGAATTAGTATTAAAGCTTATTACTAAGAATGAGAAGAGTTACTGTTTTTGTGAACGGGACGTCCAGAAATGGGAAGGTTGTAGCTGTGTATGGGACCTTGACTGACCTGTTATCTGTAGCAACCAATAAGTTGGGAATCAAAGCCTGTAATTTATACAATGGAAAAGGGGGTCTTATAGATGACATAGCGCTCATCAGTGTTATTATCTTAGACCCACAGAATGATGTCAGGGCTAGAGACGATCGGCCTGGGGCACACACCGATTGGCTGACGCTTAATATTGGAGGGCGTCTCTTCACCACCACACGGAGCACCTTGGTCAGCAAGGAGCCAGAGAGCATGCTTGCTCACATGTTTCGGGAGAAGGCTGTATGGGGTAACAAGCAGGATGAATGTGGGGCTTACCTGATTGATCGCAGCCCAGAATACTTTGAGCCTATTCTTAATTACCTGCGACATGGCCAGCTCATTATCAATGAAGGAATCAATTTACTTGGGGTTTTGGAGGAGGCCCGTTTCTTTGGAATTGAGCAGCTTGCTGAGCAGTTGGAAGTAGCAATAAAGAATAACCAGACACCTGAGGACCACTCTCCCATCTCTCGCAAGGAGTTTGTTCGGTTTCTGCTGGCTACACCCACCAAATCAGAGCTCCGCTGTCAGGGACTTAATTTCAGTGGCGCTGATCTCTCTCGCCTCGACTTGCGCTACATCAACTTCAAGATGGCCAACCTGAGTCGCTGCAACCTGACACATGCCAACCTATGCTCTTCAAACCTGGAGCGCGCTGACCTGTCTGGGGCCAACCTCGATGGTGCTAACTTGCAGGGTGTCAAGATGCTCTGTTCAAATGCTGAGGGGGCGTCTCTCAAAGGATGCAATTTTGAGGACCCATCTGGACTCAAGGCCAACTTAGAGGGTGCCAATCTGAAAGGGGTTGACATGGAGGGAAGTCAGATGACCGGAATTAACCTGCGTGTGGCCACTCTCAAAAATGCTAAGCTGAAGAACTGTAACCTGCGGGGTGCCACTTTGGCAGGAACCGATCTTGAGAACTGTGATCTGTCTGGCTGTGACCTACAAGAGGCCAACTTGAGAGGGTCCAACGTGAAGGGGGCCATTTTTGAAGAGATGCTGACTGCATTGCACATGTCTCAGAGTGTTAGATAACTCTTCTGCACATTCCATCTGGGTTCAGGCTGGTTAATCTCATGGATGCCTGGCAAAGGTCTTCATTTGCCAGCCAATCCCACCCACCCCTAATATCAAGCTTCTTTGACCCTTGTGCAATACAGGTAGTTTTATGCACATCCCTGGCATTCCAGCTCATATACTAGCTTTAAATAATTTGCACTAGAGCACATTCAGGGATATTTGTTTAACTGTCTTTCCTTATTTTTCCCCAAAACCAAAATATTTCATGTATGTTTACTATTATGTCTGGATTCAATCCTACCTTATTAGTATTCTTTTAAATTCTAGATGTATACATACTTTCTTGATTATCTGAAAGTCAGATTATTAAACTATAAGTGCATGAAGGTTTAAAGTAACAATATAAGGGCATGGTGTGACTGTACATTCTTATCAATGTACTTAGTTTTATGTCAGATAGGCTTTATGATTAGGATAATGTTTTTTCTACGCCGAAGCCATACTGTAGCATGATAAAAATGGCAAAAGAATTTGCTGTTATTGCACCACCTAATTATGCTGTGTATTTCATTTTTCTTATAATAATGTGGCTGTTGAAACATAATTTCAAGGATGCAATGTAATCTTCATTGATAATCACTGAAGTCAGATGCTGCctgttgttttgtttggtgtTCTCTGTGAATCTACCtccttatttttttttaccactttCTGATTTATATCTAGTTCCATGCATTTCATGGTGGTTTTTGTCTCTTGTTGTATGAAAACCATTATTCATAATATCCAAATATGATAAGTAAATAATCAAAGTGAATAAGCTGTTTTTTAAGTGTTACTGTCATTTTCCAGCTTGTGGATCACCTAGTTGTATGAGGAAGATGGTTGTATAACAACACACCCATCACAATGAATTGCATATAATTCAATCATGTTTTGAAGTTTGCACAAATCTGTCTTAAATTAAACATTTTGTTCACTAA

Function

NR:

description
BTB/POZ domain-containing protein KCTD9-like

GO: NA

KEGG:

id description
K21919 KCTD9; BTB/POZ domain-containing protein KCTD9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621440.2 False 2263 mRNA 0.42 12 55683843 55690131
XM_036935829.1 True 2233 mRNA 0.42 11 55683843 55690131

Neighbor

gene id symbol gene type direction distance location
LOC110535996 LOC106585571 coding upstream 3156 55676136 ~ 55680687 (+)
LOC110535995 LOC106580250 coding upstream 33705 55630478 ~ 55650138 (+)
tbx16 LOC106579871 coding upstream 93172 55587364 ~ 55590671 (+)
LOC110535064 cabin1 coding upstream 106144 55489662 ~ 55577699 (+)
LOC118937389 NA coding upstream 195063 55481198 ~ 55488780 (+)
LOC110535066 gnrh1 coding downstream 621 55690752 ~ 55691740 (+)
ankrd39 ankrd39 coding downstream 1659 55691790 ~ 55706758 (+)
fgfr1a LOC106579865 coding downstream 32621 55722752 ~ 55763695 (+)
lgi3 LOC106579864 coding downstream 91210 55781341 ~ 55796866 (+)
chmp7 chmp7 coding downstream 110135 55800266 ~ 55803159 (+)
G995430 NA non-coding upstream 30871 55651960 ~ 55652972 (+)
G995436 NA non-coding upstream 47469 55636175 ~ 55636374 (+)
G995402 NA non-coding upstream 84811 55597394 ~ 55599032 (+)
G995377 NA non-coding upstream 114587 55531500 ~ 55569256 (+)
G995462 NA non-coding downstream 18251 55708382 ~ 55709298 (+)
G995500 NA non-coding downstream 87408 55777539 ~ 55844504 (+)
G995466 NA non-coding downstream 115157 55805288 ~ 55806077 (+)
G995531 NA non-coding downstream 167640 55857771 ~ 55858007 (+)
G995540 NA non-coding downstream 179977 55870108 ~ 55870444 (+)
G995364 NA other upstream 164669 55518709 ~ 55519174 (+)
G995268 NA other upstream 326727 55355201 ~ 55357116 (+)
slc20a1a s20aa other upstream 640434 55036382 ~ 55043511 (+)
G993738 NA other upstream 1457380 54226131 ~ 54226463 (+)
G995607 NA other downstream 312723 56002854 ~ 56004867 (+)
LOC110536010 LOC106579856 other downstream 338040 56028141 ~ 56037300 (+)
LOC110536021 LOC106579845 other downstream 696388 56386314 ~ 56434657 (+)
LOC110536038 LOC106579834 other downstream 1361978 57044708 ~ 57072429 (+)
G997824 NA other downstream 2097337 57787468 ~ 57789171 (+)

Expression


Co-expression Network