LOC110535066 (gnrh1)


Basic Information

Item Value
gene id LOC110535066
gene name gnrh1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55690752 ~ 55691740 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935831.1
CTGCTGTAAAAGTGCACAATCATTCCCAAAGTGTTAATCTTTTAAAAGGCTATTAGGGGTGCCCGGTGCCTGGAGTGGAGGTGCTTAAAGCTGCTCTGTAATATATTTTTGAGTGGAGCCTTTTTCTGTAATCCACTTTGTGTCCTCCTGCAGCAGTGATGGAACTGGTGGGTATGGCATATGGGAACTAAGCTGCCTATAGAACCTCAGACACCTGAGTTGCTTACCTAAAGTAATAAGGCTTACTTTGCAGAATGGAAGAGAAAAAGTTATTGTTGCTGCTGCTTTTGGTCGCGCCTCTAGTGTCATAGGGTTGTTGTCAACATTGGTCCTATGGCTTGAACCCAGGGGGGGAAAGAGTTACTGACAGCCTGTCTGACACCCTGGACAATCTGGCTGAAGACCCGAAGATAGACACATCTTGCAGTTTGTTTGGCTGTGCTGATGTCTCACCTCATCCCGAAATTTACCGGCTGAGGGTATTACTTGTAAGCCTCGCTGACAAAGTGGACTCAATAATATATAGCAAATGTATGCTAGCTAACTCTATTAAACATTGCCGTGCCATCATTGTGTTTTGTGGTGTCTTTTGTGGGACAATTTTTGCTAGATCGCATATTACAGGGTATGGCTTTAAAACAGTGTAACACGATGTCAAAATACA

Function

symbol description
gnrh1 Predicted to enable gonadotropin hormone-releasing hormone activity and gonadotropin-releasing hormone receptor binding activity. Predicted to be involved in reproduction. Predicted to act upstream of or within several processes, including negative regulation of neuron migration; regulation of ovarian follicle development; and response to ethanol. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Implicated in breast cancer; hypogonadotropic hypogonadism 12 with or without anosmia; and periodontitis.

NR:

description
LOW QUALITY PROTEIN: progonadoliberin-1

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005576 extracellular region cellular_component
GO:0005183 gonadotropin hormone-releasing hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935831.1 True 664 mRNA 0.44 4 55690752 55691740

Neighbor

gene id symbol gene type direction distance location
LOC110535997 LOC106579866 coding upstream 621 55683843 ~ 55690131 (+)
LOC110535996 LOC106585571 coding upstream 10065 55676136 ~ 55680687 (+)
LOC110535995 LOC106580250 coding upstream 40614 55630478 ~ 55650138 (+)
tbx16 LOC106579871 coding upstream 100081 55587364 ~ 55590671 (+)
LOC110535064 cabin1 coding upstream 113053 55489662 ~ 55577699 (+)
ankrd39 ankrd39 coding downstream 50 55691790 ~ 55706758 (+)
fgfr1a LOC106579865 coding downstream 31012 55722752 ~ 55763695 (+)
lgi3 LOC106579864 coding downstream 89601 55781341 ~ 55796866 (+)
chmp7 chmp7 coding downstream 108526 55800266 ~ 55803159 (+)
entpd4 LOC106579862 coding downstream 117440 55809180 ~ 55817839 (+)
G995430 NA non-coding upstream 37780 55651960 ~ 55652972 (+)
G995436 NA non-coding upstream 54378 55636175 ~ 55636374 (+)
G995402 NA non-coding upstream 91720 55597394 ~ 55599032 (+)
G995377 NA non-coding upstream 121496 55531500 ~ 55569256 (+)
G995462 NA non-coding downstream 16642 55708382 ~ 55709298 (+)
G995500 NA non-coding downstream 85799 55777539 ~ 55844504 (+)
G995466 NA non-coding downstream 113548 55805288 ~ 55806077 (+)
G995531 NA non-coding downstream 166031 55857771 ~ 55858007 (+)
G995540 NA non-coding downstream 178368 55870108 ~ 55870444 (+)
G995364 NA other upstream 171578 55518709 ~ 55519174 (+)
G995268 NA other upstream 333636 55355201 ~ 55357116 (+)
slc20a1a s20aa other upstream 647343 55036382 ~ 55043511 (+)
G993738 NA other upstream 1464289 54226131 ~ 54226463 (+)
G995607 NA other downstream 311114 56002854 ~ 56004867 (+)
LOC110536010 LOC106579856 other downstream 336431 56028141 ~ 56037300 (+)
LOC110536021 LOC106579845 other downstream 694779 56386314 ~ 56434657 (+)
LOC110536038 LOC106579834 other downstream 1360369 57044708 ~ 57072429 (+)
G997824 NA other downstream 2095728 57787468 ~ 57789171 (+)

Expression


Co-expression Network