ankrd39 (ankrd39)


Basic Information

Item Value
gene id ankrd39
gene name ankrd39
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55691790 ~ 55706758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621441.2
tgcctagttaaaactAAATTCAAACAAATGATTGCCAGTATGAGTTACGTTGTCTACTCTTGTAGCGAACCTTTATTTTGAAAATGTTGACAGCATGGCTTTAATGTCGAGTTCCTGTGTACACGTGTTCATCACAGAACATAAACAACTGCACTGAAGACTGCAATGTCGTCTGGAGGCCATCAATGTAACGTTAGGTGTTGTTCCCACCAACTTGCGTCCCCCAGTGCGCACCAAACATTGGACGAAATGGACTTTGAAAGAGGTATTTGGTCTGCTGCAATGGATGGAGACTTGGAGAGGGTCAAATCACTTCTCAAGAAGGGTACAGACCCTAACCTAAGAGACTCAGCCAATTACACTGCTCTGcacTATGCCAGCCGCAGTGGGCATAAGTCTGTATGTAAGTTCCTTCTGGAGAGCGGGGCATGTGCCAACCCTCAGACGCCAGGTGGGGCCACTCCTCTTCACCGATCTGCCTACTGTGGACAGCTGGACGTGGTCCAGCTGTTGCTTCACCATGGGGCAGATCCCCAGCTATGTGATGGTGATGGATCCTCCCCTTTACATAAGGCTGCAGAGCAGAGCCATGAAGATGTCTGCAGACTCCTTCTCCAGTGCTGTCCCTCCCTCCGGAGCCACACAAACAAGAAGTCCCAGGCACCTTACCAGCTAGCACCAGATGGACATCTGAAGGAGCTCCTGGAACCCCCACAATAACACAGGGACACCCAGTTTAACCAaagtcaacacaacacattacttaTCAGATTAACTAGAAGATTATCTGTGAGGCAGTCACTTGTGTTCAgctgttttgtgtttgttttcttAAGGTCCCCACCTAAACTGGCTGGTAAGGGATTGATTTTATCTGGTGTAGTTCTTTCTCAACCAGCAGGGGGAGCAAGTCTACCAGCAATTGGTTTACTTTGTCAACTAGCTGTTTCTGCATGTTCACACTCACAAAATTCCATGGCATGCTGATCCTGACATCCTGGCCCTGAATTTGTTAGGTCTGGATGGCCCTTGGATAACTGCAGTAGCACGCGCCTGTTTGTCTGTACTAGCTGCTTTGAGCCATAGAGCAAGTGCACGTCTGTGAAAAAGATGTACTGAAAAACTGATTACGTGGTAAAATATGAATCTGGAAGTAGTTTGCTTCTTGTTCTACTGTTTTTTCATAGAACGTGGAACTGAAGAGGCTTTCCATATGGTGGGAGGGCATTCCATATGGTGTGAGACTGAAATGTGTATGAGTGTGTTGTGGGGAGGAAGTAATTCTGCAGCCTATGGATTTTCCTTGGACAAAGGAAATAGCACCAGCCTCAACAAAAATAGGATTAATCAAGCAAATGAGTTAGCTTTAGTTTGACCACATACATTATTTATATTATGAAAAATCTCTAATTTTGTCTGATCAGTTATGATGGATAAGACTTGTATAATGTCTAAATGAATGGATTTATGTTTGTTTATAGACATGAGAGGGAAAAATTCCATCTTATATGTCTGGACTTGGAAGTAGCTACTTGGCCAACATCCTTGCCTTTCAATAATTAGGTAAATATATGGTTTGGAGTTAAActtcttgcgctctctctcttgtTAGCATTCATTAAACTGAATAAAACACTTGTTATATTATTAAAATCTTTActacacatttcactgcacctatccagtgtGTGACAATAAAACGTATTTACACTACAGTTAAAAAaattttgggtcacttagaaatgtcttttttttttaagaaaagcactttttttttggtccattaaaataaacatcaaattgatcagaaatacagtgtagacattaatgttgtagattactattgtagctggaaatggcagatttttaatgggaatatctacattggcgtacggaggcccattatcagcaaccatcactcctgtgttccaatggcacgttgttagctaattcaagtttagcattttaaaatgctaattgatcattagaaaacccttttgcaattatgttagcacacctGAAAACTTGTCTGATTGATTAttaaaagcaataaaactgtc
>XM_021621442.2
CTTTATTTTGAAAATGTTGACAGCATGGCTTTAATGTCGAGTTCCTGTGTACACGTGTTCATCACAGGTTAGTTAATTAAACAAGTATTTGTATACATTCTGTGGTGGTGGTTCAAGATTATTAGCTTTGAGTCCAGAATGTCCAGATAAATAGCTCAACTCAAGCTCGGTTACTTTAGGGACACGTTTGCAGACAATCGTCCGATTTTCGCTAGCATCTGTGTTCGCTACTTACgagagctagctagctgtagctaacaacattagctagctaacgttagcaacgtACAGTAGTGGGACTTGGAAGCCAGCTACTGAGTGCAACGTTTCCTCTATTTTCGTGCTTTGTTTTTCAAATGCGTTTTTTTATACAAGAACATAAACAACTGCACTGAAGACTGCAATGTCGTCTGGAGGCCATCAATGTAACGTTAGGTGTTGTTCCCACCAACTTGCGTCCCCCAGTGCGCACCAAACATTGGACGAAATGGACTTTGAAAGAGGTATTTGGTCTGCTGCAATGGATGGAGACTTGGAGAGGGTCAAATCACTTCTCAAGAAGGGTACAGACCCTAACCTAAGAGACTCAGCCAATTACACTGCTCTGcacTATGCCAGCCGCAGTGGGCATAAGTCTGTATGTAAGTTCCTTCTGGAGAGCGGGGCATGTGCCAACCCTCAGACGCCAGGTGGGGCCACTCCTCTTCACCGATCTGCCTACTGTGGACAGCTGGACGTGGTCCAGCTGTTGCTTCACCATGGGGCAGATCCCCAGCTATGTGATGGTGATGGATCCTCCCCTTTACATAAGGCCTGGTCACTGTCATGCTGGAAAAGCTCTCCTTCCACCTGTTCTCTACACAGGAGCCATTCCCTGGTCTCCCAGCTGCAGGACCAGAGAGCAGGGCCTGGCTGGTTGAGCCTGAAGTAATCAGCTAAATGGCTGGCAGATGGGAACACATCTAAAAGGAAGTGGACTTCCAGACACTGGCATAGAAGACTGCCCAATATTATCAAATGTAACCTGGAATGAGGGAGGGGGGTCATAATCAAATCTCAGGGGGGCTACTCCTCAGAGATCCAACTTAATCTAATTCAACTCCACTCCTGCTTTATAGCAGCCTGATGATTGAAGTGATGTTGGAAGTCTTACTCTCCCACTGTCCAGGTTAGGTGGTAACGGAAGGCTGCACAGACTCGGATCCAGGGGCTGCTGCCCCTCTCAATCAGCACTGTCACTATCTAGGGTGTTAAAACAGAAGTGTCAAACACGCTTTGACATGAGGCCCAAAACAAAGCTAAAGTTGTTAATATTGTCAGACCCTGCCATAAATACTTGAATTTGCAACCCATGACCATGGGACACTAGCATCCTTGAAGTTTTACAGCAGGGAGTGACTTTAGTAGAGGAGCATTTTTAACTAGCCCTTTAGAACGTATTGGCAATAAGGAAGAGAGCCAAATTGCCGACAGTCATCTAAAGGTGGATTTCAGTGGTTCCGccttaaaaataaatgtattaattaggatcccctttagctactgctaaagcagcagctactcttcctggggttcacgcaaacataaaacatgacataatacatcaCATTAATAGACAGGGACAGAACTACATGCATTTAAAATAAGAATACACGCTTTTGTACATTTATTTCTTCATAATCATGTGATTAATAGACACTACTAAATGGCTTGCCCCTCAGTCATACCCAGTGGTGACACATCATTCAGGGCAGGTACAGAGCTACCTGTTTAGCTAAGGAAAGAAATCTatctatatttttgttgttgcctgttttgcatgttattttggcatttatACTTATCACATATCAGttcgcaaacaatgtaaaaaaacagtGAGTTAATAAAGCCGTATA

Function

symbol description
ankrd39 Predicted to enable NAD+ ADP-ribosyltransferase activity. Predicted to be involved in several processes, including positive regulation of canonical Wnt signaling pathway; positive regulation of telomere capping; and protein localization to chromosome, telomeric region. Predicted to be active in cytoplasm and nucleus. Orthologous to human ANKRD39 (ankyrin repeat domain 39).

NR:

description
ankyrin repeat domain-containing protein 39 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621441.2 False 2060 mRNA 0.41 5 55691790 55695711
XM_021621442.2 True 1898 mRNA 0.44 4 55691860 55706758

Neighbor

gene id symbol gene type direction distance location
LOC110535066 gnrh1 coding upstream 50 55690752 ~ 55691740 (+)
LOC110535997 LOC106579866 coding upstream 1659 55683843 ~ 55690131 (+)
LOC110535996 LOC106585571 coding upstream 11103 55676136 ~ 55680687 (+)
LOC110535995 LOC106580250 coding upstream 41652 55630478 ~ 55650138 (+)
tbx16 LOC106579871 coding upstream 101119 55587364 ~ 55590671 (+)
fgfr1a LOC106579865 coding downstream 15994 55722752 ~ 55763695 (+)
lgi3 LOC106579864 coding downstream 74583 55781341 ~ 55796866 (+)
chmp7 chmp7 coding downstream 93508 55800266 ~ 55803159 (+)
entpd4 LOC106579862 coding downstream 102422 55809180 ~ 55817839 (+)
slc25a37 slc25a37 coding downstream 135275 55842033 ~ 55852793 (+)
G995430 NA non-coding upstream 38818 55651960 ~ 55652972 (+)
G995436 NA non-coding upstream 55416 55636175 ~ 55636374 (+)
G995402 NA non-coding upstream 92758 55597394 ~ 55599032 (+)
G995377 NA non-coding upstream 122534 55531500 ~ 55569256 (+)
G995462 NA non-coding downstream 1624 55708382 ~ 55709298 (+)
G995500 NA non-coding downstream 70781 55777539 ~ 55844504 (+)
G995466 NA non-coding downstream 98530 55805288 ~ 55806077 (+)
G995531 NA non-coding downstream 151013 55857771 ~ 55858007 (+)
G995540 NA non-coding downstream 163350 55870108 ~ 55870444 (+)
G995364 NA other upstream 172616 55518709 ~ 55519174 (+)
LOC110535064 cabin1 other upstream 179580 55489662 ~ 55577699 (+)
G995268 NA other upstream 334674 55355201 ~ 55357116 (+)
slc20a1a s20aa other upstream 648381 55036382 ~ 55043511 (+)
G993738 NA other upstream 1465327 54226131 ~ 54226463 (+)
G995607 NA other downstream 296096 56002854 ~ 56004867 (+)
LOC110536010 LOC106579856 other downstream 321413 56028141 ~ 56037300 (+)
LOC110536021 LOC106579845 other downstream 679761 56386314 ~ 56434657 (+)
LOC110536038 LOC106579834 other downstream 1345351 57044708 ~ 57072429 (+)
G997824 NA other downstream 2080710 57787468 ~ 57789171 (+)

Expression


Co-expression Network