lgi3 (LOC106579864)


Basic Information

Item Value
gene id lgi3
gene name LOC106579864
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55781341 ~ 55796866 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935833.1
GAATGCCATTTTGTCAACTCTAAGGTATATGAATCTTCCAGGTAGACTTTAAAAGgTCTTTCGATAGCTCAGCAACATCACTTCTACTGctgcggctgctgctgctgctacaagAGGAAATATGCTGAATGCTGGATCGAGAAGGGTCCCGGGATGGCTGAAGCTGTTGTCCAGCCTATGTCTGCTTCTCTGCCTGGTGGGGGAGACTGGGGCCAAGAGGGTCCCCAAAATCCCCCGCTGTCCTACCACCTGCTCCTGCACCAAAGACAGTGCCTTCTGTGTGGATACCAAGACTATCCCCAAGAGCTTTCCCCCTGGGATCATCTCCCTGACGATGGTGAATGCAGCCTTCACTACAATCCCAGAGGGAGCCTTCTCCCACCTGCACCTTCTGCAGTTTCTtcTGCTGAACTCCAACACCTTCACTGTTGTGGCTGATGATGCCTTCGCAGGTCTGTCACACCTGCAGTACTTATTTATAGAGAACAATGACATCCAAGCCCTGTCAAAGCACACCTTCAGAGGGCTTAAATCCTTGACTCACCTtTCTCTGTCAAATAATAACCTGCAGCTCCTTCCACGAGAACTCTTCAAATATTTTGACATTCTGACAGACTTAGACCTGCGGGGTAACTCTTTCCGCTGTGACTGTAAAATCAAGTGGCTTGTGGACTGGATGGAGAAGTCCAACACCTCTGTCCCTGCCATCTACTGTGCCAGCCCATTTGAGTTCCAAGGCCGCAGAATCCATGATCTAACCCCAcgagacttcaactgtatcagcGCAGACTTTGCAGTTTATGAAACTTTCCCCTTCCAGTCTGTGTCAGTGGAGTCCTATGAATTCAACGACGATCAGTTTGTGGCCTTCGCCCAGCCTGATACTGGGTTCTGTACACTGTTTGTATGGGATCATGTGGAAATGGTCTTCCGGATGTACCATAATATAACATCTCGCTCCGCTGTCTACTGCAAGCCTGTGGTAATTAACAACACTCTTTACATGGTTGTGGCTCAACTTTTTGGAGGATCCCACATCTACAAGTGGGAAGAGGACCCACAGCGATTTGTGAAGATCCAGGACATTGACACCACACGTGTGAAGAAACCCAACTTTGTTGAGACCTTCCAGCTGGATGATGAGTGGTACTTTGCAGTAGCAGACAGTTCCAAGGCAGGCTCTACGAGCATATACCGCTGGAACAGCAATGGTTTCTACTCCCACCAATCCCTTCATCCCTGGCATCGTGACACCCATGTGGAGTTCCTAGATGTGGAGGGGAAGCAGCGTCTCATTCTCTCCAGTGCCTCCCAGCCCCCAGTGGTTTACCAGTGGAACCGTAGCCTGCGCCAGTTTGCCTTTCATTCCCAAATCACTGAGACTGCTGACGTGCAGATGGTCAAGCATTTCTGGGTGCGCAAAGTTCTCTACCTCTGCCTTACACGCTTCATTGGCGACTCCAAGATTCTCCGCTGGGAGGGGCAGCGCTATGTTGAGATTCAGACCCTGCCCTCACGTGGCTCCATGGCTGTGTATCCATTCATCGTGGGCCCCCGCCAGTATCTCCTCTTAGGGAGTGATTTCTCCTTCTCTCGAGTTTACTTGTGGGACGACCTTACCCAGCGCTTCCAGCTCTTCCAGGAGCTCAACATGAGAGCACCCCGGGCCTTCAGCTTGGTGTCAGTGGACAACAAAGACATCCTGCTGGCAGCCAGCTTCAAAGGCAACACCCTGGCCTACCAGCACCTAATAGTAGATCTTAGTGCCAAATAGACCAATCCAGTCAGAATCTCTGAGACCATTCATGAGTCTGTTCTGTTCTTATGAGGCCCGATTCCAACTTAGGACTTTACACCTTTCCTACACACGTCTTTCCGACGCATTTCTTAGTATTttgtattcagacttaccttatttAGTCACATAACGCGCTCTGCAGGTGTGGCTACCTTGCACACTCTGAATACATTTCATTCAACccctgaaaaccctcccacttgctagCCAACAGATTTTCTCATGGAATCTTCATTCAATATTTTTTTCAGTGCActtatcttaagccatccctttaaatacggtgCACCTTTTAGTTAGAATTTTGTCGACAGACTCGAGAGAACGGGTTCAAAATATTAAGGATCAATGAAAGAAAACACCAATTGGTAGATGGTAGATacaaaaatactctgatcttgcaGATTATTTGggtttaggaaagtatttatgaatcataaaaaacagGTTTAGAGAAACTTTACGCACGAAAGAAAGAAAATGTTGATTCTGAAAATTGCCACATTCAGTTCTTCAACACATGATAATGTTGGAAGATTAGTGTTCATAGAATTATAACAGGGAGTGTACAACAGTGTTCTATCGTCTCGTCTATTGCCTgcactaaccatggaactgtgtgATGACACGGCCAAGTATTGCGCCATGCATGGGGTTCAAACTATTACAGCTTGGTCTGCGCTCCACTCCGTAATGATTGAATTATGTCTTTTTATATTATCAACTGTTACTAAGGAAACAAATGAAGGTAAACACAGCAATGTAAGTAAATGGAATGACAATGAAGGTTATACCAACTAAAGGGAACTAAAAGTAAATTGTTAGTTGAATATGTGTTGTTATTAGGCCTACAGTACTGAcggtcgatactgatagtggctaatatttcacatgatagaaataggaaacAGAGAAAGTCACGGTATTCAAGACATTCGAGAGtgcccatccctgcaagttaaaaaaAGACTGTACAAtttaaattctgcataatggcacagtACTTCATAACCTTTACTGTGGGAAAGTTGATATGTTCATATGCTTAAGtttgctgccatatgactggtttcacgtCTCCAGAGATTATAAGGTAAAATAGACCTAACACAAGtgtcatttatatttacaattccctTATCAAAAACagattactcatttacctagctgttatcaatagctcttatcaagttgtaaattacagtgcatggtgAATGCTGTTATTTCTATCAGAAAAAAATTAAGTAGATGCTTTTTCCTCGTGGAATTGGAAGGTTCGCtcaaccttattcatggtttcctcgtGCATAAAGGTGGTGGAATAATGAAGGAATTATGTCAAGATCAGAATATGgcatatctgtagacacacctctgcCACGCCTTCATTTCTTAGATCTCCACCCCCAACCAATTGcaggtgaatagcatgctattctcatgcttaagttTGTCAGAATATGCATAGAGGGAAAAGTGCATAATAAGGGAATAATGTTCAATTTAAGCAAGGCTAACTCGGGTCGGAATCGGGCCCATGGAGAAAAGCAAATCATCTAAGCCATGTGACTAAATGCCTGTTAGGTTAGTTAACCACTTTTGAAGAGTGAGTACTAACAAACAGGAAATGCATGATATCTTCTGATGTCTCTGATTGAATCAATTAATGTGTAATGACAAAACATATCACCATGATTAATATGTGTCAAATCACTTTGCAACATCACTACTTACTCTATTTACCATGAATTCATGCTACATGGAAAATATACTGGAAGGTGCAGatatagtacaaataaaaacatataaCTAACATCAGATTATGTGAAAAGCATGTGCATCTACTGAACGGTTTTCTATTGACTGTTATAAAATCATTTTATTCATGCAATAGAAGACGAGTAGGCGGCCAGTACGTTGTAATAAACTTTAGTGAACTATTAACATAGTATATTCTGTTAATAGTTCACTAAAGTTTATTGCAATTTACTGGCTGCCTACTCATCTTCTTTCTTGAATTACCTGCCATTAGGGGCCTGCCCTCATCTCATTCATGCAATAGGAAAATAGCTGTTCACATCAAATAGAGTTTGATATGGACATTCTATGAAATGCTAGTTAATATATTTTCAAAGCAATATAAACTGTAATCTGCATGCCATAATGGTATCTTTACAGTAAATTATATTTGATAAAATAATGCTTATTCTGTATAAGTTTTATAATGTTTCACAGGTAATAAGAGCTCATAAATAACATGTATCTCTCTATGTTGTTGATCATGATTGATACCAATATATTTTCATTAATCTAGAATGTAGCTAGGCTACACAGATTTCTCTAAATGAATGTTAACTGAATAGTACTGGAAGGTTATGTCAAGCTCCTGTCATATATGTGAAAATATGCATGAATATGTACACTTTGTATGTTGTGGCTGAACTACACGGGCAGTCAATTGCCCAAACATTTTTATTCCCAATTTGAATGCCTAACAATTGAGAATCAGTTCAAATCCAGGCTTGACTCCTCATGTCTGTATTTGCTAAATGTTCAACATTTTGCATAGAGAATGTGTCAACATCCAAATTCTGGCCAAATCTCTGTGCACTTTGATTCTACATAACTTGCTTGTCTTCAGACATTTTATGTTATTCTCCTCTGTGCATTTTATGTAGCTTTACACTGTACGTAATGTAATGTATCCATGCATATACTGTAATAGTGCACCCACATTAACTAAAAAACTTGCAATAAATACTCAATTTAAACATC
>XM_021621450.2
CAGTGGCGCTGCGTACAGGTCCTAGTGCGGGGAATTGCAGCCTCGCTCCCGCAGTCTGCACTCTGACAGCAGCTCTAGGGAGAACACACACATCCAGGGAAGctgcagagcacacacacacattcagtgaAGATACCATCcgactgccctctctctctctctctctctctctctctctctctctctctctctcactctctctctctctcactctctctccccaactcttCACAGTCTTTCGATAGCTCAGCAACATCACTTCTACTGctgcggctgctgctgctgctacaagAGGAAATATGCTGAATGCTGGATCGAGAAGGGTCCCGGGATGGCTGAAGCTGTTGTCCAGCCTATGTCTGCTTCTCTGCCTGGTGGGGGAGACTGGGGCCAAGAGGGTCCCCAAAATCCCCCGCTGTCCTACCACCTGCTCCTGCACCAAAGACAGTGCCTTCTGTGTGGATACCAAGACTATCCCCAAGAGCTTTCCCCCTGGGATCATCTCCCTGACGATGGTGAATGCAGCCTTCACTACAATCCCAGAGGGAGCCTTCTCCCACCTGCACCTTCTGCAGTTTCTtcTGCTGAACTCCAACACCTTCACTGTTGTGGCTGATGATGCCTTCGCAGGTCTGTCACACCTGCAGTACTTATTTATAGAGAACAATGACATCCAAGCCCTGTCAAAGCACACCTTCAGAGGGCTTAAATCCTTGACTCACCTtTCTCTGTCAAATAATAACCTGCAGCTCCTTCCACGAGAACTCTTCAAATATTTTGACATTCTGACAGACTTAGACCTGCGGGGTAACTCTTTCCGCTGTGACTGTAAAATCAAGTGGCTTGTGGACTGGATGGAGAAGTCCAACACCTCTGTCCCTGCCATCTACTGTGCCAGCCCATTTGAGTTCCAAGGCCGCAGAATCCATGATCTAACCCCAcgagacttcaactgtatcagcGCAGACTTTGCAGTTTATGAAACTTTCCCCTTCCAGTCTGTGTCAGTGGAGTCCTATGAATTCAACGACGATCAGTTTGTGGCCTTCGCCCAGCCTGATACTGGGTTCTGTACACTGTTTGTATGGGATCATGTGGAAATGGTCTTCCGGATGTACCATAATATAACATCTCGCTCCGCTGTCTACTGCAAGCCTGTGGTAATTAACAACACTCTTTACATGGTTGTGGCTCAACTTTTTGGAGGATCCCACATCTACAAGTGGGAAGAGGACCCACAGCGATTTGTGAAGATCCAGGACATTGACACCACACGTGTGAAGAAACCCAACTTTGTTGAGACCTTCCAGCTGGATGATGAGTGGTACTTTGCAGTAGCAGACAGTTCCAAGGCAGGCTCTACGAGCATATACCGCTGGAACAGCAATGGTTTCTACTCCCACCAATCCCTTCATCCCTGGCATCGTGACACCCATGTGGAGTTCCTAGATGTGGAGGGGAAGCAGCGTCTCATTCTCTCCAGTGCCTCCCAGCCCCCAGTGGTTTACCAGTGGAACCGTAGCCTGCGCCAGTTTGCCTTTCATTCCCAAATCACTGAGACTGCTGACGTGCAGATGGTCAAGCATTTCTGGGTGCGCAAAGTTCTCTACCTCTGCCTTACACGCTTCATTGGCGACTCCAAGATTCTCCGCTGGGAGGGGCAGCGCTATGTTGAGATTCAGACCCTGCCCTCACGTGGCTCCATGGCTGTGTATCCATTCATCGTGGGCCCCCGCCAGTATCTCCTCTTAGGGAGTGATTTCTCCTTCTCTCGAGTTTACTTGTGGGACGACCTTACCCAGCGCTTCCAGCTCTTCCAGGAGCTCAACATGAGAGCACCCCGGGCCTTCAGCTTGGTGTCAGTGGACAACAAAGACATCCTGCTGGCAGCCAGCTTCAAAGGCAACACCCTGGCCTACCAGCACCTAATAGTAGATCTTAGTGCCAAATAGACCAATCCAGTCAGAATCTCTGAGACCATTCATGAGTCTGTTCTGTTCTTATGAGGCCCGATTCCAACTTAGGACTTTACACCTTTCCTACACACGTCTTTCCGACGCATTTCTTAGTATTttgtattcagacttaccttatttAGTCACATAACGCGCTCTGCAGGTGTGGCTACCTTGCACACTCTGAATACATTTCATTCAACccctgaaaaccctcccacttgctagCCAACAGATTTTCTCATGGAATCTTCATTCAATATTTTTTTCAGTGCActtatcttaagccatccctttaaatacggtgCACCTTTTAGTTAGAATTTTGTCGACAGACTCGAGAGAACGGGTTCAAAATATTAAGGATCAATGAAAGAAAACACCAATTGGTAGATGGTAGATacaaaaatactctgatcttgcaGATTATTTGggtttaggaaagtatttatgaatcataaaaaacagGTTTAGAGAAACTTTACGCACGAAAGAAAGAAAATGTTGATTCTGAAAATTGCCACATTCAGTTCTTCAACACATGATAATGTTGGAAGATTAGTGTTCATAGAATTATAACAGGGAGTGTACAACAGTGTTCTATCGTCTCGTCTATTGCCTgcactaaccatggaactgtgtgATGACACGGCCAAGTATTGCGCCATGCATGGGGTTCAAACTATTACAGCTTGGTCTGCGCTCCACTCCGTAATGATTGAATTATGTCTTTTTATATTATCAACTGTTACTAAGGAAACAAATGAAGGTAAACACAGCAATGTAAGTAAATGGAATGACAATGAAGGTTATACCAACTAAAGGGAACTAAAAGTAAATTGTTAGTTGAATATGTGTTGTTATTAGGCCTACAGTACTGAcggtcgatactgatagtggctaatatttcacatgatagaaataggaaacAGAGAAAGTCACGGTATTCAAGACATTCGAGAGtgcccatccctgcaagttaaaaaaAGACTGTACAAtttaaattctgcataatggcacagtACTTCATAACCTTTACTGTGGGAAAGTTGATATGTTCATATGCTTAAGtttgctgccatatgactggtttcacgtCTCCAGAGATTATAAGGTAAAATAGACCTAACACAAGtgtcatttatatttacaattccctTATCAAAAACagattactcatttacctagctgttatcaatagctcttatcaagttgtaaattacagtgcatggtgAATGCTGTTATTTCTATCAGAAAAAAATTAAGTAGATGCTTTTTCCTCGTGGAATTGGAAGGTTCGCtcaaccttattcatggtttcctcgtGCATAAAGGTGGTGGAATAATGAAGGAATTATGTCAAGATCAGAATATGgcatatctgtagacacacctctgcCACGCCTTCATTTCTTAGATCTCCACCCCCAACCAATTGcaggtgaatagcatgctattctcatgcttaagttTGTCAGAATATGCATAGAGGGAAAAGTGCATAATAAGGGAATAATGTTCAATTTAAGCAAGGCTAACTCGGGTCGGAATCGGGCCCATGGAGAAAAGCAAATCATCTAAGCCATGTGACTAAATGCCTGTTAGGTTAGTTAACCACTTTTGAAGAGTGAGTACTAACAAACAGGAAATGCATGATATCTTCTGATGTCTCTGATTGAATCAATTAATGTGTAATGACAAAACATATCACCATGATTAATATGTGTCAAATCACTTTGCAACATCACTACTTACTCTATTTACCATGAATTCATGCTACATGGAAAATATACTGGAAGGTGCAGatatagtacaaataaaaacatataaCTAACATCAGATTATGTGAAAAGCATGTGCATCTACTGAACGGTTTTCTATTGACTGTTATAAAATCATTTTATTCATGCAATAGAAGACGAGTAGGCGGCCAGTACGTTGTAATAAACTTTAGTGAACTATTAACATAGTATATTCTGTTAATAGTTCACTAAAGTTTATTGCAATTTACTGGCTGCCTACTCATCTTCTTTCTTGAATTACCTGCCATTAGGGGCCTGCCCTCATCTCATTCATGCAATAGGAAAATAGCTGTTCACATCAAATAGAGTTTGATATGGACATTCTATGAAATGCTAGTTAATATATTTTCAAAGCAATATAAACTGTAATCTGCATGCCATAATGGTATCTTTACAGTAAATTATATTTGATAAAATAATGCTTATTCTGTATAAGTTTTATAATGTTTCACAGGTAATAAGAGCTCATAAATAACATGTATCTCTCTATGTTGTTGATCATGATTGATACCAATATATTTTCATTAATCTAGAATGTAGCTAGGCTACACAGATTTCTCTAAATGAATGTTAACTGAATAGTACTGGAAGGTTATGTCAAGCTCCTGTCATATATGTGAAAATATGCATGAATATGTACACTTTGTATGTTGTGGCTGAACTACACGGGCAGTCAATTGCCCAAACATTTTTATTCCCAATTTGAATGCCTAACAATTGAGAATCAGTTCAAATCCAGGCTTGACTCCTCATGTCTGTATTTGCTAAATGTTCAACATTTTGCATAGAGAATGTGTCAACATCCAAATTCTGGCCAAATCTCTGTGCACTTTGATTCTACATAACTTGCTTGTCTTCAGACATTTTATGTTATTCTCCTCTGTGCATTTTATGTAGCTTTACACTGTACGTAATGTAATGTATCCATGCATATACTGTAATAGTGCACCCACATTAACTAAAAAACTTGCAATAAATACTCAATTTAAACATC

Function

NR:

description
leucine-rich repeat LGI family member 3-like isoform X1

GO: NA

KEGG:

id description
K19999 LGI3; leucine-rich repeat LGI family member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935833.1 False 4573 mRNA 0.41 11 55781341 55796866
XM_021621450.2 True 4751 mRNA 0.42 10 55786732 55796866

Neighbor

gene id symbol gene type direction distance location
fgfr1a LOC106579865 coding upstream 17646 55722752 ~ 55763695 (+)
ankrd39 ankrd39 coding upstream 74583 55691790 ~ 55706758 (+)
LOC110535066 gnrh1 coding upstream 89601 55690752 ~ 55691740 (+)
LOC110535997 LOC106579866 coding upstream 91210 55683843 ~ 55690131 (+)
LOC110535996 LOC106585571 coding upstream 100654 55676136 ~ 55680687 (+)
chmp7 chmp7 coding downstream 3400 55800266 ~ 55803159 (+)
entpd4 LOC106579862 coding downstream 12314 55809180 ~ 55817839 (+)
slc25a37 slc25a37 coding downstream 45167 55842033 ~ 55852793 (+)
LOC110536010 LOC106579856 coding downstream 231275 56028141 ~ 56037300 (+)
egr3 LOC106579855 coding downstream 330286 56127152 ~ 56136999 (+)
G995462 NA non-coding upstream 72043 55708382 ~ 55709298 (+)
G995430 NA non-coding upstream 128369 55651960 ~ 55652972 (+)
G995436 NA non-coding upstream 144967 55636175 ~ 55636374 (+)
G995402 NA non-coding upstream 182309 55597394 ~ 55599032 (+)
tbx16 LOC106579871 non-coding upstream 191049 55587364 ~ 55590671 (+)
G995466 NA non-coding downstream 8422 55805288 ~ 55806077 (+)
G995531 NA non-coding downstream 60905 55857771 ~ 55858007 (+)
G995540 NA non-coding downstream 73242 55870108 ~ 55870444 (+)
G995541 NA non-coding downstream 73941 55870807 ~ 55968382 (+)
G995751 NA non-coding downstream 435717 56232583 ~ 56232918 (+)
G995364 NA other upstream 262167 55518709 ~ 55519174 (+)
LOC110535064 cabin1 other upstream 269131 55489662 ~ 55577699 (+)
G995268 NA other upstream 424225 55355201 ~ 55357116 (+)
slc20a1a s20aa other upstream 737932 55036382 ~ 55043511 (+)
G993738 NA other upstream 1554878 54226131 ~ 54226463 (+)
G995607 NA other downstream 205988 56002854 ~ 56004867 (+)
LOC110536021 LOC106579845 other downstream 589653 56386314 ~ 56434657 (+)
LOC110536038 LOC106579834 other downstream 1255243 57044708 ~ 57072429 (+)
G997824 NA other downstream 1990602 57787468 ~ 57789171 (+)

Expression


Co-expression Network