chmp7 (chmp7)


Basic Information

Item Value
gene id chmp7
gene name chmp7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 55800266 ~ 55803159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621453.2
GGGagttatactccagtctagtaggtggcggtaatgtaacatttattggatgccaaccgccgttaaacctcattgacgaagaagaagaagcagcagcagAGGAAGAAGAAGCAGCAGCTAACTTCAAAACAATACGTTGTGGAGCACACAGTCAAAATGGTTCCATCAAATCTTGGGGAAGAAATGTCTACTGAAGTAGCGTTACCACCTGAGTGGGAGGACGATGAACGGATGAATTTCCTGTTCTCTGACTTTAAAGAAAACCGAGATGTCAGCACAACAGATTGGGACAGTAAAATGGATTTCTGGACATCACTCATTCTTAAAATCTGCAGGAGTCGCGGAACCGTCTGTGTTAATTTGCAGGAGCTGAACAAGATTTTTCAGAGAAAAGGAATTATGCCTTTGGGTTTGGCTACTGTCATTCAGTGCATGGCCAGGTGTGGCAAGATACAAAGGGAGTCAGAGTTTGCCGCAAATGTAGACTGTGGGTGGGTGTCTTGGGGTGTTGGCCTGTTGCTGGTGAAGCCTTTAAAATGGACCTTTTCAACTCTTCTTGGTAGCAGTGGGGTTACTTTGAAGGAGTTGTTTGTTGTCATTGAACTGGTAAAGGAGAAGGCAGCAGAATTGCTTGGTGTCTACCGGAGCTCCCCAGTGGCCAACCACTCTCTCCTGTCCTTCCAGGAGCTCCGTACACTGTCGTCCCATGTCTGTGCTGACGAGAGTACCTTGTGTATGGCTCTGCTACAGCTGCAGAGGGAGAAGCAGGTGACAGTATCACTGCATGGAGGTGAGAAGATTGTGAAGTTTTCTCAGCCAGGACAGAATCATGTGTCTCCTGCCAGTGATGTAGACCTAGGCATCTACCAGCTCCAGCGCAGTGAGAGACTGCTTGAAGAAAGGGTGGAGGCATTGGGACTCGAGGCAGAGAAGTACAAAGAAGAAGCTAGGGTGTTGCTGCGGGAAGGGAAGAAATCTCAGGCTCTAAGGTGTTTGAGAAGCCGAAAGAGAGTAGAGAAGAAAGCAGACCACTTATATGCCCAGCTGGAAAATGTGAAGGGAATCCTAGAGAAGATAGCAAACTCACAGACCGACAAACTAGTGATACAGGCATATCAGGCTGGAGTGTCAGCCCTGCGACTCTCTTTGAAGGATGTGACAGTAGAAGGAGCTGAGAGCCTTGTGGATCAAATCCAAGAGTTGTGTGATACTCAGGATGAAGTGAACCAAATTCTGGCTGGTGGAGCACTCAACTCAACGGATGCAGACACAGACGGGCTGGAGGATGAGCTAAGATTTTTATTGGAGAACTCTAGTCTGGATGAGCCTTCTACGCTACCTGAAGTACCGTCACACCCTCTTTCACCTGTCAGGGAATCTGGTTCTCTTTGTGATGATCTGCTGAGCGCTTTGCCCACAGTCCCTCAAAACCACTTCAATATAACAGGTGATGAACTGGACAAAGCGCGTAGTTGCATAACGCTTGCAGATACAGGTCTTCAACAAAAATATCGTACCTCTCCAGTGAAGAGGGCTGAGCCTGCACAGTGACAACAGTAATAAAATAAGTCAACTGCACTAACGATCCCTGACCCTCAAAATGTGTCTGGGCATGGTGATCAAAAATAATTGCATGATATGTCTTTTGTAACATAGGTCTGTGAtcacttttttttaaagggggtagatcagctttaattttgcagattgtagcttccatcaacgTAATTGTGAGCATCCTTTCCAA
>XM_021621454.2
cgccgttaaacctcattgacgaagaagaagaagcagcagcagAGGAAGAAGAAGCAGCAGCTAACTTCAAAACAATACGTTGTGGAGCACACAGTCAGTAGAAATGGTTCCATCAAATCTTGGGGAAGAAATGTCTACTGAAGTAGCGTTACCACCTGAGTGGGAGGACGATGAACGGATGAATTTCCTGTTCTCTGACTTTAAAGAAAACCGAGATGTCAGCACAACAGATTGGGACAGTAAAATGGATTTCTGGACATCACTCATTCTTAAAATCTGCAGGAGTCGCGGAACCGTCTGTGTTAATTTGCAGGAGCTGAACAAGATTTTTCAGAGAAAAGGAATTATGCCTTTGGGTTTGGCTACTGTCATTCAGTGCATGGCCAGGTGTGGCAAGATACAAAGGGAGTCAGAGTTTGCCGCAAATGTAGACTGTGGGTGGGTGTCTTGGGGTGTTGGCCTGTTGCTGGTGAAGCCTTTAAAATGGACCTTTTCAACTCTTCTTGGTAGCAGTGGGGTTACTTTGAAGGAGTTGTTTGTTGTCATTGAACTGGTAAAGGAGAAGGCAGCAGAATTGCTTGGTGTCTACCGGAGCTCCCCAGTGGCCAACCACTCTCTCCTGTCCTTCCAGGAGCTCCGTACACTGTCGTCCCATGTCTGTGCTGACGAGAGTACCTTGTGTATGGCTCTGCTACAGCTGCAGAGGGAGAAGCAGGTGACAGTATCACTGCATGGAGGTGAGAAGATTGTGAAGTTTTCTCAGCCAGGACAGAATCATGTGTCTCCTGCCAGTGATGTAGACCTAGGCATCTACCAGCTCCAGCGCAGTGAGAGACTGCTTGAAGAAAGGGTGGAGGCATTGGGACTCGAGGCAGAGAAGTACAAAGAAGAAGCTAGGGTGTTGCTGCGGGAAGGGAAGAAATCTCAGGCTCTAAGGTGTTTGAGAAGCCGAAAGAGAGTAGAGAAGAAAGCAGACCACTTATATGCCCAGCTGGAAAATGTGAAGGGAATCCTAGAGAAGATAGCAAACTCACAGACCGACAAACTAGTGATACAGGCATATCAGGCTGGAGTGTCAGCCCTGCGACTCTCTTTGAAGGATGTGACAGTAGAAGGAGCTGAGAGCCTTGTGGATCAAATCCAAGAGTTGTGTGATACTCAGGATGAAGTGAACCAAATTCTGGCTGGTGGAGCACTCAACTCAACGGATGCAGACACAGACGGGCTGGAGGATGAGCTAAGATTTTTATTGGAGAACTCTAGTCTGGATGAGCCTTCTACGCTACCTGAAGTACCGTCACACCCTCTTTCACCTGTCAGGGAATCTGGTTCTCTTTGTGATGATCTGCTGAGCGCTTTGCCCACAGTCCCTCAAAACCACTTCAATATAACAGGTGATGAACTGGACAAAGCGCGTAGTTGCATAACGCTTGCAGATACAGGTCTTCAACAAAAATATCGTACCTCTCCAGTGAAGAGGGCTGAGCCTGCACAGTGACAACAGTAATAAAATAAGTCAACTGCACTAACGATCCCTGACCCTCAAAATGTGTCTGGGCATGGTGATCAAAAATAATTGCATGATATGTCTTTTGTAACATAGGTCTGTGAtcacttttttttaaagggggtagatcagctttaattttgcagattgtagcttccatcaacgTAATTGTGAGCATCCTTTCCAA
>XM_036935834.1
GTTAGATGGTTGCTTGCTGATCATCTGGGTGAAATGATATCATAGAATATTCTAGTGAAACAGCTCAGTTTGATATAGCCTTGGTCACTTAATGTTTGTTATTCTGCCTGCTagcttagctaacgttagcatttcACTCTCATTATCTGTCTTTTGCTGTACAGAAATGGTTCCATCAAATCTTGGGGAAGAAATGTCTACTGAAGTAGCGTTACCACCTGAGTGGGAGGACGATGAACGGATGAATTTCCTGTTCTCTGACTTTAAAGAAAACCGAGATGTCAGCACAACAGATTGGGACAGTAAAATGGATTTCTGGACATCACTCATTCTTAAAATCTGCAGGAGTCGCGGAACCGTCTGTGTTAATTTGCAGGAGCTGAACAAGATTTTTCAGAGAAAAGGAATTATGCCTTTGGGTTTGGCTACTGTCATTCAGTGCATGGCCAGGTGTGGCAAGATACAAAGGGAGTCAGAGTTTGCCGCAAATGTAGACTGTGGGTGGGTGTCTTGGGGTGTTGGCCTGTTGCTGGTGAAGCCTTTAAAATGGACCTTTTCAACTCTTCTTGGTAGCAGTGGGGTTACTTTGAAGGAGTTGTTTGTTGTCATTGAACTGGTAAAGGAGAAGGCAGCAGAATTGCTTGGTGTCTACCGGAGCTCCCCAGTGGCCAACCACTCTCTCCTGTCCTTCCAGGAGCTCCGTACACTGTCGTCCCATGTCTGTGCTGACGAGAGTACCTTGTGTATGGCTCTGCTACAGCTGCAGAGGGAGAAGCAGGTGACAGTATCACTGCATGGAGGTGAGAAGATTGTGAAGTTTTCTCAGCCAGGACAGAATCATGTGTCTCCTGCCAGTGATGTAGACCTAGGCATCTACCAGCTCCAGCGCAGTGAGAGACTGCTTGAAGAAAGGGTGGAGGCATTGGGACTCGAGGCAGAGAAGTACAAAGAAGAAGCTAGGGTGTTGCTGCGGGAAGGGAAGAAATCTCAGGCTCTAAGGTGTTTGAGAAGCCGAAAGAGAGTAGAGAAGAAAGCAGACCACTTATATGCCCAGCTGGAAAATGTGAAGGGAATCCTAGAGAAGATAGCAAACTCACAGACCGACAAACTAGTGATACAGGCATATCAGGCTGGAGTGTCAGCCCTGCGACTCTCTTTGAAGGATGTGACAGTAGAAGGAGCTGAGAGCCTTGTGGATCAAATCCAAGAGTTGTGTGATACTCAGGATGAAGTGAACCAAATTCTGGCTGGTGGAGCACTCAACTCAACGGATGCAGACACAGACGGGCTGGAGGATGAGCTAAGATTTTTATTGGAGAACTCTAGTCTGGATGAGCCTTCTACGCTACCTGAAGTACCGTCACACCCTCTTTCACCTGTCAGGGAATCTGGTTCTCTTTGTGATGATCTGCTGAGCGCTTTGCCCACAGTCCCTCAAAACCACTTCAATATAACAGGTGATGAACTGGACAAAGCGCGTAGTTGCATAACGCTTGCAGATACAGGTCTTCAACAAAAATATCGTACCTCTCCAGTGAAGAGGGCTGAGCCTGCACAGTGACAACAGTAATAAAATAAGTCAACTGCACTAACGATCCCTGACCCTCAAAATGTGTCTGGGCATGGTGATCAAAAATAATTGCATGATATGTCTTTTGTAACATAGGTCTGTGAtcacttttttttaaagggggtagatcagctttaattttgcagattgtagcttccatcaacgTAATTGTGAGCATCCTTTCCAA

Function

symbol description
chmp7 Predicted to be involved in several processes, including exit from mitosis; late endosome to vacuole transport via multivesicular body sorting pathway; and nuclear membrane reassembly. Predicted to act upstream of or within protein transport and vacuolar transport. Predicted to be located in nuclear envelope. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Orthologous to human CHMP7 (charged multivesicular body protein 7).

NR:

description
charged multivesicular body protein 7-like

GO: NA

KEGG:

id description
K15053 CHMP7; charged multivesicular body protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621453.2 False 1747 mRNA 0.47 11 55800266 55803159
XM_021621454.2 False 1694 mRNA 0.47 11 55800323 55803159
XM_036935834.1 True 1757 mRNA 0.46 10 55800430 55803159

Neighbor

gene id symbol gene type direction distance location
lgi3 LOC106579864 coding upstream 3400 55781341 ~ 55796866 (+)
fgfr1a LOC106579865 coding upstream 36571 55722752 ~ 55763695 (+)
ankrd39 ankrd39 coding upstream 93508 55691790 ~ 55706758 (+)
LOC110535066 gnrh1 coding upstream 108526 55690752 ~ 55691740 (+)
LOC110535997 LOC106579866 coding upstream 110135 55683843 ~ 55690131 (+)
entpd4 LOC106579862 coding downstream 6021 55809180 ~ 55817839 (+)
slc25a37 slc25a37 coding downstream 38874 55842033 ~ 55852793 (+)
LOC110536010 LOC106579856 coding downstream 224982 56028141 ~ 56037300 (+)
egr3 LOC106579855 coding downstream 323993 56127152 ~ 56136999 (+)
bin3 LOC106585344 coding downstream 334388 56137547 ~ 56175403 (+)
G995462 NA non-coding upstream 90968 55708382 ~ 55709298 (+)
G995430 NA non-coding upstream 147294 55651960 ~ 55652972 (+)
G995436 NA non-coding upstream 163892 55636175 ~ 55636374 (+)
G995402 NA non-coding upstream 201234 55597394 ~ 55599032 (+)
tbx16 LOC106579871 non-coding upstream 209974 55587364 ~ 55590671 (+)
G995466 NA non-coding downstream 2129 55805288 ~ 55806077 (+)
G995531 NA non-coding downstream 54612 55857771 ~ 55858007 (+)
G995540 NA non-coding downstream 66949 55870108 ~ 55870444 (+)
G995541 NA non-coding downstream 67648 55870807 ~ 55968382 (+)
G995751 NA non-coding downstream 429424 56232583 ~ 56232918 (+)
G995364 NA other upstream 281092 55518709 ~ 55519174 (+)
LOC110535064 cabin1 other upstream 288056 55489662 ~ 55577699 (+)
G995268 NA other upstream 443150 55355201 ~ 55357116 (+)
slc20a1a s20aa other upstream 756857 55036382 ~ 55043511 (+)
G993738 NA other upstream 1573803 54226131 ~ 54226463 (+)
G995607 NA other downstream 199695 56002854 ~ 56004867 (+)
LOC110536021 LOC106579845 other downstream 583360 56386314 ~ 56434657 (+)
LOC110536038 LOC106579834 other downstream 1248950 57044708 ~ 57072429 (+)
G997824 NA other downstream 1984309 57787468 ~ 57789171 (+)

Expression


Co-expression Network