LOC110536010 (LOC106579856)


Basic Information

Item Value
gene id LOC110536010
gene name LOC106579856
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 56028141 ~ 56037300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621478.2
GGCTGGAGCTGCTGTTAACGGTACAGACAGACTCAAAGCCCACCAGTGTCTTCCGACACACAGTGATGATACGTTTATTATTTTTACCAAGTGGATTTTTCTGGTGTCTTGAGCGGCTGGTCGCCTATATTTAATCCACTACATTTAACATTGCTGCGAAGATGAAGTTCAAACCAGGCTACGGTCAGGGAGGCTACGGTCAGGTTCAAGCTTCATCCCATGGAGCCCTCTTCTTCTCGGTCTCAAACATCGGTCAATCCGATGCACCACTTCCTTATGTTGCGGCCCCAGTTGATGGATTCTGACATGGACTATGAGAGGCCAAACGTTGAGACTATCAAGTGTGTGGTGGTAGGGGACAACGCTGTTGGGAAGACCCGCCTTATCTGTGCCCGGGCCTGTAATgcaacactgactcagtaccaatTGCTTGCTACGCATGTACCCACTGTCTGGGCCATAGACCAGTACAGAGTTTGCCAGGAAGTTCTGGAGCGATCTAGGGATGTGGTGGATGAGGTCAGCGTGTCGTTGCGACTCTGGGACACGTTCGGGGACCATCACAAGGACCGACGCTTTGCATATGGAAGGTCGGATGTGGTGGTTCTATGTTTCTCCATCGCCAACCCCAACTCCCTGTACCATGTGAAGACCATGTGGTACCCTGAGATCAAGCACTTCTGCCCCCGGGCTCCAGTCATCTTGGTGGGCTGCCAGCTGGACCTGCGCTATGCTGACCTGGAGGCAGTCAACAGGGCACGACGGCCACTAGCAAGACCGATTAAATCCAATGAGATTTTGCCTCCAGAGAAGGGCCATGAGGTGGCCAAAGAGCTGGGAGTGCCATACTACGAGACCAGTGTTGTGGCTCAGTTTGGAGTAAAGGACGTATTTGATAATGCCATCCGAGCTGCCCTAATCTCACGGCGCCACCTGCAGTTCTGGAAGTCTCACCTGCGCAATGTGCAGCGGCCCCTCCTCCAGGCCCCCTTCCTGCCTCCCAAACCCCCCCCTCCCATCATCACTGTACCacctccccccaccaccactgaGGAGCATCCTGGCCGTCTTCTAGAGGACCCCCTGTGTTCCGATGTCATCCTGGTTCTACAGGAGAAGCAGAGAATCTTCGCTCACAAGATCTACTTGGCCACGTCCTCCTCCAAGTTCTATGACCTCTTCATCCTGGATGCCCGACCTGAGGAGTCTGAGCGGCCCACGCGCGCCACCGCTCTGTCTGGGCGCGAGATGCTGATGCGTGCTGCAAGCTTCGATGTGTGTGAGAGCACTGACGAGGGCGACAGGGCCAACCTGCGGGCCTGCACCAGTGATGGAACCCTGAGAGACTCTGAGGGAGGCCGGAGGGGCAGACTGCTGTCTACCTTGAGCAGAGCTTTTGTCAGCATCCAGGAGGAGCTGGTGGATGACCCAGTGACCTACAACCCCAGGCCTATGACCGTGGTGTACATGGACCAGTCCATGCAGCTGGGGCCCTTCCGCGCTGTGCTGCGATACCTGTACACAGGCCAGCTGGACGAGCACGAGAAGGAGCTGATGCACATTGCACACATTGCTGAGCTGCTGGAGGTCTTTGACCTGCGCATGATGGTGGCCAATATTCTTAACAACGAGGCCTTCATGAACCAGGAAATCACCAAAGCCTTCCATGTACGACGAACCAACAGAGTCAAAGACTGCCTGGCCAAAGGTACCTTCTCTGATGTAGCGTTCAAGCTGGATGATGGAACGATCATGGCCCATAAGCCCCTGCTCATCTCCAGCTGTGACTGGATGGCAGCTATGTTTGGGGGGCCCTTTGTGGAGAGCTGCACCAAAGAGGTCCTGTTTCCCAACACAACTCGCAGCTGTATGAGGGCTGTGCTGGAGTACCTCTACACTGGGCGCTTCTGTTCCCGCACTGACCTGGATGCCATGGAGCTCATTGTTCTCGCCAACCGTCTTTGCCTCCCACACCTGGTTGCACTTACAGAACTCTACACAGTGACAGTATTAATGGAGGCTGCTATGATGGGGGCTGATATTGATGGAGATGTGCTGGTGTACCTGGAGATGGCTCAGTTCCACTGTGCCCAACAGCTAAGTGGCTGGTGCCTTCACCACATCTGCACCAACTATAATAGTGTGTGTCGCAAGTTTCCTCGAGACATGAAGGCCAAATCTACAAACAACCAGGACTACTTTGAGAAGCACCGCTGGCCACCAGTGTGGTTCCTGAAGGAGGACGACCACTATCAAAGAGCACGGAAGGAGCGGGACAAGGAGGACTTCCTGTACCAGAGGAGGCAGTGTAAACGCAAGTGGCTCTTCTGGAaccttccctcttctccctctgccAACTCTTCCTCTTCTGGTTCCAATGCTGTCATCTGATTGGCTCTCAGGGTACAGGCAAGGCCCCCTGTGGGGATGATTTGGGAAAGTGGAGCATCAGCACTGTTGGCCAGACACTAGGCCCCCTCATTAAGGCCCTCCCGCCCGCCCTCCTTCATTTCTCTTTTTGCATCTGCAGCCACGCTATACTCTCCCGGGTTTGCAGGGTCAGCTAAATCAAATAATGAACGAAATGAGCCTCTTTTGCTTTTTGTGTTAGCATATCCTGTCACATTGCAGTGCAGAGACCATGAAGCTAAAACCTTAAAGCTCAGTGACTTCAACCTTATGAACAAGGCAAGGTAAATACAGGTGCAGGTGACTGCTCAATATGGTGTTGATATTCCTGCATACACCACCAGAAGGAGAACTGAGAAAGTTATGAGAGGGATTTGCATCAGGTTACAGAACTGTGATCCTAAGCTCATGATAACCATTGACTGACTTGAATTGACAACCAAGTGCTTATCAGCTGCAACAGACAAATAGCAAAGACCAATGACCAGCAAACCAACACAGAAATCAAGTCTCAGTGATACAACACTTTGCCCTTAAGTGTTTGTACAATCTACCAAACCAGGATGTGTACAGTACAATTATAACCACTCCTCAAGCAGAAATATCAACAAAATGCATTACGTCTACATTACGATGAATCTATTGATGTCATGTAGGACATCGTCTTAGACCATCTTTCTATTGGAAACCACTTTCTGTGCAGAATTATGTTTTAAATAGCGGCGGTTTGACTCCTTTACAGTTATTGCATATCTGAATGTTTGTATACAACTTGCACAGCTGACGTTGATATGAGTGTATACATGACCACAGTGTTCTTGTGACGCAGGGGTTAAAGTGCTCTGTCACTACGACGGGTTTCCGTCATATGGATGACTCATGAGGTTTGATaaatgtatatgtacagtaccagtcaaaagtttggacacctactcattcctgtttttttctttatttttactattttctgtattgtagaataatagtgaaggcatcaaaactatgaaatagcacatatggaatcatgtagtaaccaaaaaagtcttaaacaaatccaaatctatttgtcacgtgtgcaccctctccggcctctaggtccccaggctgctcattatggcgcacacctgtcaccatcattacgcgcataatgacactcacctagACTCCATCACCTTCTTGATTACCTACTCTATATATGTCaatccctttggtttcttccccagtcgtcattgttcctgtttcatgtcggtgcacTGTTCGTGtttagtgtttcttgttttgttaatttatttattaaatgtagtCACACactgaacttgcttcccaactcTCAGTGTACATCGTTACAGAATGACGACTCAACAAAGAGAAGAAGGAGGGAgtgtttattttgtttgttttggtatTGGAGGTGATGTCGGGTCCGGGTGTCCGAACCGGCGCTACATGGGAAGCCTCAACCAGTTTGTCAGGTTCCCCTGACTCAGCTGGCCTGACGGGTTCCCATGCCTCAGCGGGCTcgacaggctcccatgcctcagcggactcgacaggctcccatgcctcagcggactcgacaggctcccatgcctcagcgggctcgacaggctcccatgcctcagcgggctcgacaggctcccatgcctcagcgggtTCAACATGTTTCCATGCCTAGACCGAGGCAATCGGGTAGGTCTCAGCCGGTTCATCAGGTTTCTGCGACTCAGCAGAGGTGACCGGTCCGCTCCAGATCCCAGGGATCGTCCCTTTGGTTGGCGTCCTGTGGCTGAAACCGAACTTACCggggaggggtactgtcacgtatgCTCTCTCTCCAGCACTCTAGGACGTCATGTTCCCGCAcctcagccggatcgtcaggTTCCCGCGCCTTAGTAACCGCTCCGCTCCTGATCCCCGAGATCATCATCTTGGGcggcgtcctgcggctggagctgTCGATTGGGGAGGGGCTACTGTcccgtgtgctccctctccggcctctaggtcaccaggctgctcgttatggcgcacacctgtcaccagcgtcATGCGCATAATGACCCTCACCTaaactccatcacctccttgattacctactctatatatgtcactccctttggttacttccccagtcgtcattgttcctgtttcatgtcggtgcactgtttgtgtttcttgttttgttcatttattaattaaatgtattcactccctgactCTCAGCGTACAACGCTAcaatatttgacattcttcaaagtagccaccctttggtttgatgacagctttgcacactcttggcattctctcaaccagcttcacctgggatgcttttccaacagtcttgaaggagttccc
>XM_021621479.2
TGTTCTGTCAATCTATTGCCCATTGCATGGGTGGTAGCAGGGTATGACATAGAAGCAAATCTGGTTCCCTTGGAAACTGAATAACGAGATCAGCAACCACCATTTTCGAGACGTGAGGCCCCAGTTGATGGATTCTGACATGGACTATGAGAGGCCAAACGTTGAGACTATCAAGTGTGTGGTGGTAGGGGACAACGCTGTTGGGAAGACCCGCCTTATCTGTGCCCGGGCCTGTAATgcaacactgactcagtaccaatTGCTTGCTACGCATGTACCCACTGTCTGGGCCATAGACCAGTACAGAGTTTGCCAGGAAGTTCTGGAGCGATCTAGGGATGTGGTGGATGAGGTCAGCGTGTCGTTGCGACTCTGGGACACGTTCGGGGACCATCACAAGGACCGACGCTTTGCATATGGAAGGTCGGATGTGGTGGTTCTATGTTTCTCCATCGCCAACCCCAACTCCCTGTACCATGTGAAGACCATGTGGTACCCTGAGATCAAGCACTTCTGCCCCCGGGCTCCAGTCATCTTGGTGGGCTGCCAGCTGGACCTGCGCTATGCTGACCTGGAGGCAGTCAACAGGGCACGACGGCCACTAGCAAGACCGATTAAATCCAATGAGATTTTGCCTCCAGAGAAGGGCCATGAGGTGGCCAAAGAGCTGGGAGTGCCATACTACGAGACCAGTGTTGTGGCTCAGTTTGGAGTAAAGGACGTATTTGATAATGCCATCCGAGCTGCCCTAATCTCACGGCGCCACCTGCAGTTCTGGAAGTCTCACCTGCGCAATGTGCAGCGGCCCCTCCTCCAGGCCCCCTTCCTGCCTCCCAAACCCCCCCCTCCCATCATCACTGTACCacctccccccaccaccactgaGGAGCATCCTGGCCGTCTTCTAGAGGACCCCCTGTGTTCCGATGTCATCCTGGTTCTACAGGAGAAGCAGAGAATCTTCGCTCACAAGATCTACTTGGCCACGTCCTCCTCCAAGTTCTATGACCTCTTCATCCTGGATGCCCGACCTGAGGAGTCTGAGCGGCCCACGCGCGCCACCGCTCTGTCTGGGCGCGAGATGCTGATGCGTGCTGCAAGCTTCGATGTGTGTGAGAGCACTGACGAGGGCGACAGGGCCAACCTGCGGGCCTGCACCAGTGATGGAACCCTGAGAGACTCTGAGGGAGGCCGGAGGGGCAGACTGCTGTCTACCTTGAGCAGAGCTTTTGTCAGCATCCAGGAGGAGCTGGTGGATGACCCAGTGACCTACAACCCCAGGCCTATGACCGTGGTGTACATGGACCAGTCCATGCAGCTGGGGCCCTTCCGCGCTGTGCTGCGATACCTGTACACAGGCCAGCTGGACGAGCACGAGAAGGAGCTGATGCACATTGCACACATTGCTGAGCTGCTGGAGGTCTTTGACCTGCGCATGATGGTGGCCAATATTCTTAACAACGAGGCCTTCATGAACCAGGAAATCACCAAAGCCTTCCATGTACGACGAACCAACAGAGTCAAAGACTGCCTGGCCAAAGGTACCTTCTCTGATGTAGCGTTCAAGCTGGATGATGGAACGATCATGGCCCATAAGCCCCTGCTCATCTCCAGCTGTGACTGGATGGCAGCTATGTTTGGGGGGCCCTTTGTGGAGAGCTGCACCAAAGAGGTCCTGTTTCCCAACACAACTCGCAGCTGTATGAGGGCTGTGCTGGAGTACCTCTACACTGGGCGCTTCTGTTCCCGCACTGACCTGGATGCCATGGAGCTCATTGTTCTCGCCAACCGTCTTTGCCTCCCACACCTGGTTGCACTTACAGAACTCTACACAGTGACAGTATTAATGGAGGCTGCTATGATGGGGGCTGATATTGATGGAGATGTGCTGGTGTACCTGGAGATGGCTCAGTTCCACTGTGCCCAACAGCTAAGTGGCTGGTGCCTTCACCACATCTGCACCAACTATAATAGTGTGTGTCGCAAGTTTCCTCGAGACATGAAGGCCAAATCTACAAACAACCAGGACTACTTTGAGAAGCACCGCTGGCCACCAGTGTGGTTCCTGAAGGAGGACGACCACTATCAAAGAGCACGGAAGGAGCGGGACAAGGAGGACTTCCTGTACCAGAGGAGGCAGTGTAAACGCAAGTGGCTCTTCTGGAaccttccctcttctccctctgccAACTCTTCCTCTTCTGGTTCCAATGCTGTCATCTGATTGGCTCTCAGGGTACAGGCAAGGCCCCCTGTGGGGATGATTTGGGAAAGTGGAGCATCAGCACTGTTGGCCAGACACTAGGCCCCCTCATTAAGGCCCTCCCGCCCGCCCTCCTTCATTTCTCTTTTTGCATCTGCAGCCACGCTATACTCTCCCGGGTTTGCAGGGTCAGCTAAATCAAATAATGAACGAAATGAGCCTCTTTTGCTTTTTGTGTTAGCATATCCTGTCACATTGCAGTGCAGAGACCATGAAGCTAAAACCTTAAAGCTCAGTGACTTCAACCTTATGAACAAGGCAAGGTAAATACAGGTGCAGGTGACTGCTCAATATGGTGTTGATATTCCTGCATACACCACCAGAAGGAGAACTGAGAAAGTTATGAGAGGGATTTGCATCAGGTTACAGAACTGTGATCCTAAGCTCATGATAACCATTGACTGACTTGAATTGACAACCAAGTGCTTATCAGCTGCAACAGACAAATAGCAAAGACCAATGACCAGCAAACCAACACAGAAATCAAGTCTCAGTGATACAACACTTTGCCCTTAAGTGTTTGTACAATCTACCAAACCAGGATGTGTACAGTACAATTATAACCACTCCTCAAGCAGAAATATCAACAAAATGCATTACGTCTACATTACGATGAATCTATTGATGTCATGTAGGACATCGTCTTAGACCATCTTTCTATTGGAAACCACTTTCTGTGCAGAATTATGTTTTAAATAGCGGCGGTTTGACTCCTTTACAGTTATTGCATATCTGAATGTTTGTATACAACTTGCACAGCTGACGTTGATATGAGTGTATACATGACCACAGTGTTCTTGTGACGCAGGGGTTAAAGTGCTCTGTCACTACGACGGGTTTCCGTCATATGGATGACTCATGAGGTTTGATaaatgtatatgtacagtaccagtcaaaagtttggacacctactcattcctgtttttttctttatttttactattttctgtattgtagaataatagtgaaggcatcaaaactatgaaatagcacatatggaatcatgtagtaaccaaaaaagtcttaaacaaatccaaatctatttgtcacgtgtgcaccctctccggcctctaggtccccaggctgctcattatggcgcacacctgtcaccatcattacgcgcataatgacactcacctagACTCCATCACCTTCTTGATTACCTACTCTATATATGTCaatccctttggtttcttccccagtcgtcattgttcctgtttcatgtcggtgcacTGTTCGTGtttagtgtttcttgttttgttaatttatttattaaatgtagtCACACactgaacttgcttcccaactcTCAGTGTACATCGTTACAGAATGACGACTCAACAAAGAGAAGAAGGAGGGAgtgtttattttgtttgttttggtatTGGAGGTGATGTCGGGTCCGGGTGTCCGAACCGGCGCTACATGGGAAGCCTCAACCAGTTTGTCAGGTTCCCCTGACTCAGCTGGCCTGACGGGTTCCCATGCCTCAGCGGGCTcgacaggctcccatgcctcagcggactcgacaggctcccatgcctcagcggactcgacaggctcccatgcctcagcgggctcgacaggctcccatgcctcagcgggctcgacaggctcccatgcctcagcgggtTCAACATGTTTCCATGCCTAGACCGAGGCAATCGGGTAGGTCTCAGCCGGTTCATCAGGTTTCTGCGACTCAGCAGAGGTGACCGGTCCGCTCCAGATCCCAGGGATCGTCCCTTTGGTTGGCGTCCTGTGGCTGAAACCGAACTTACCggggaggggtactgtcacgtatgCTCTCTCTCCAGCACTCTAGGACGTCATGTTCCCGCAcctcagccggatcgtcaggTTCCCGCGCCTTAGTAACCGCTCCGCTCCTGATCCCCGAGATCATCATCTTGGGcggcgtcctgcggctggagctgTCGATTGGGGAGGGGCTACTGTcccgtgtgctccctctccggcctctaggtcaccaggctgctcgttatggcgcacacctgtcaccagcgtcATGCGCATAATGACCCTCACCTaaactccatcacctccttgattacctactctatatatgtcactccctttggttacttccccagtcgtcattgttcctgtttcatgtcggtgcactgtttgtgtttcttgttttgttcatttattaattaaatgtattcactccctgactCTCAGCGTACAACGCTAcaatatttgacattcttcaaagtagccaccctttggtttgatgacagctttgcacactcttggcattctctcaaccagcttcacctgggatgcttttccaacagtcttgaaggagttccc
>TU1133052
ACTCAAAGCCCACCAGTGTCTTCCGACACACAGTGATGATACGTTTATTATTTTTACCAAGTGGATTTTTCTGGTGTCTTGAGCGGCTGGTCGCCTATATTTAATCCACTACATTTAACATTGCTGCGAAGATGAAGTTCAAACCAGGCTACGGTCAGGGAGGCTACGGTCAGGTTCAAGCTTCATCCCATGGAGCCCTCTTCTTCTCGGTCTCAAACATCGGTCAATCCGATGCACCACTTCCTTATGTTGCGGCCCCAGTTGATGGATTCTGACATGGACTATGAGAGGCCAAACGTTGAGACTATCAAGTGTGTGGTGGTAGGGGACAACGCTGTTGGGAAGACCCGCCTTATCTGTGCCCGGGCCTGTAATgcaacactgactcagtaccaatTGCTTGCTACGCATGTACCCACTGTCTGGGCCATAGACCAGTACAGAGTTTGCCAGGAAGTTCTGGAGCGATCTAGGGATGTGGTGGATGAGGTCAGCGTGTCGTTGCGACTCTGGGACACGTTCGGGGACCATCACAAGGACCGACGCTTTGCATATGGAAGGTCGGATGTGGTGGTTCTATGTTTCTCCATCGCCAACCCCAACTCCCTGTACCATGTGAAGACCATGTGGTACCCTGAGATCAAGCACTTCTGCCCCCGGGCTCCAGTCATCTTGGTGGGCTGCCAGCTGGACCTGCGCTATGCTGACCTGGAGGCAGTCAACAGGGCACGACGGCCACTAGCAAGACCGATTAAATCCAATGAGATTTTGCCTCCAGAGAAGGGCCATGAGGTGGCCAAAGAGCTGGGAGTGCCATACTACGAGACCAGTGTTGTGGCTCAGTTTGGAGTAAAGGACGTATTTGATAATGCCATCCGAGCTGCCCTAATCTCACGGCGCCACCTGCAGTTCTGGAAGTCTCACCTGCGCAATGTGCAGCGG

Function

NR:

description
rho-related BTB domain-containing protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621478.2 False 4767 mRNA 0.51 10 56028141 56037300
XM_021621479.2 False 4600 mRNA 0.51 10 56029914 56037300
TU1133052 True 942 TUCP 0.53 5 56028171 56032536

Neighbor

gene id symbol gene type direction distance location
slc25a37 slc25a37 coding upstream 175348 55842033 ~ 55852793 (+)
entpd4 LOC106579862 coding upstream 210302 55809180 ~ 55817839 (+)
chmp7 chmp7 coding upstream 224982 55800266 ~ 55803159 (+)
lgi3 LOC106579864 coding upstream 231275 55781341 ~ 55796866 (+)
fgfr1a LOC106579865 coding upstream 264446 55722752 ~ 55763695 (+)
egr3 LOC106579855 coding downstream 89852 56127152 ~ 56136999 (+)
bin3 LOC106585344 coding downstream 100247 56137547 ~ 56175403 (+)
ubl4a LOC106579850 coding downstream 205679 56242979 ~ 56246219 (+)
si:dkey-32e23.4 dnm1l coding downstream 210633 56247933 ~ 56266701 (+)
disp3 disp3 coding downstream 232629 56269929 ~ 56283982 (+)
G995541 NA non-coding upstream 59759 55870807 ~ 55968382 (+)
G995540 NA non-coding upstream 157697 55870108 ~ 55870444 (+)
G995531 NA non-coding upstream 170134 55857771 ~ 55858007 (+)
G995500 NA non-coding upstream 183637 55777539 ~ 55844504 (+)
G995466 NA non-coding upstream 222064 55805288 ~ 55806077 (+)
G995751 NA non-coding downstream 195283 56232583 ~ 56232918 (+)
G995699 LOC106578697 non-coding downstream 196689 56233989 ~ 56234484 (+)
G995760 NA non-coding downstream 247503 56284803 ~ 56287035 (+)
G995776 NA non-coding downstream 251109 56288409 ~ 56290216 (+)
G995782 LOC106579847 non-coding downstream 259955 56297255 ~ 56326423 (+)
G995607 NA other upstream 23274 56002854 ~ 56004867 (+)
G995364 NA other upstream 508967 55518709 ~ 55519174 (+)
LOC110535064 cabin1 other upstream 515931 55489662 ~ 55577699 (+)
G995268 NA other upstream 671025 55355201 ~ 55357116 (+)
slc20a1a s20aa other upstream 984732 55036382 ~ 55043511 (+)
LOC110536021 LOC106579845 other downstream 349219 56386314 ~ 56434657 (+)
LOC110536038 LOC106579834 other downstream 1014809 57044708 ~ 57072429 (+)
G997824 NA other downstream 1750168 57787468 ~ 57789171 (+)
G998557 LOC106588150 other downstream 2264285 58301585 ~ 58302987 (+)
LOC110536086 LOC106580340 other downstream 3326601 59363887 ~ 59371838 (+)

Expression


Co-expression Network