bin3 (LOC106585344)


Basic Information

Item Value
gene id bin3
gene name LOC106585344
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 56137547 ~ 56175403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621485.2
AATCCCCTTGACCCCCACGTGAACACAAACTACCGTAGCCACTTCCTGATTACTTAATCTATTATTTTGTATGAAAGGGGATGAGGTTTGCTGAGAGAATAGCTGCCCATTGAAACTGGATTAGAAATTCAGACAAAATGAGCTGGATGCCCTTCAAGATTGGACAACCAAAAAAGCAGATTGTTTCCAAAACAgttgaAAGAGACTTTGAACGAGAATATGACAAGCTCCAAAAGTTGGAAGATCAGACAAAGAAGCTCCACAAAGACATGAAGAAAAGCACAGAGGCTGATATAGCGATGTCCAAGGCAGCAGTGAAGATCTCAGGTGACCTGCTCAGTAACCCGCTGTGTGAACAGGACCAGGCCTTCCTGGAGTCCATGACGGCTCTGGACACAGCCATGAAGAGGATGGACTCCTTTAACCAGGAGAAGGTGAACCAGATCTCAAAGACGGTGATCGATCCTCTGAAAAAgTACAGCAGTGTGTTCCCCAGCCTCAACATGGCCGTGAAACGAAGGGAGCAAGCTCTACAGGACTACAAGAGGTTACAGTCCAAGGTAGAGAAGtatgaagagaaggagaagacagGTCCCATCATGGTCAAACTACACCAGGCCAGGGAGGAGCTGAGACCAGTCAGGGAGGACTTTGAATCCAAGAACAAGCAGCTGTTGGATGAGATGCCCAAGTTCTACCACAGCCGCATCGACTACTTTCAGCCCAGCTTTGAGGCACTCATCCGGGCACAGGTGGTGTACTTCACAGAGATGCACAATATCTTCAGTGAGTTGACGGATCAGATCGACCAGGCAGGGCTGACTgatgagcagagggagagggagaacgaggCCAAGCTGAATGAGCTGCGTGCTCTGTCCATTGTCGCTGATGACTGAGAGAACACCAAGAAGGGGAAGGGCTCCCTCTAAACCTCTGGCCTTGCCTCCTTTCACACCTCAGTGAATGGATTTATCTTTTTCAGGATCCTTCTGTGAAAATGGACCGCTTTGGTCATAGCCTAATCATTAATAGCTTTCTTGCACTAATCTCCTCTCCTGACATCGAAAGAAACAGAGCAACTCAAAGCATTTTAACTGCCACATTTACCAAGCCATCAgccaatatgtatatattttttgaatcATGTAATGAAACCGTTCTAAGAACTAACTTGTGGTTTACACCATAGAATTACAAATAGTACTATAGATTTAAGATCCCTGCGGGTCACACCTTTCTCAAAGCTCCATACTCAAGTTTGAATCTGTTTTCTAGTCatttccaaaacatgcataccAGGAAATGTATTGAAACAAATTGGATAGTACTGTTAGCGAACTAGAAATGTGACTCAGGGTGGTGGGTCGAATCGCTCCATTTGTGTTATTCACACAGATCTAGCATGTGCATTGTGGACCGGGAACTTGAGGTAAAAATATTGAAAGTTGCCTGTAGTATTTAACTCCAGCTTCCTGACTGTCATTATTCTTCAGATCTGTGATGGTGTCAACATTTCTTTGGCTGTTGCCTAATTGTCCCCTGCTTCTGAAAGGCTAAGGAATAATCTAACATTGTCTTTGAGATGGTCCTTTTACCCTTCTTCGCATAGGTTGAGGACTTGCTTTCCATAACAAATGCCGTTGCTCCCTCTAGTGGCACTTAGTTCATTTGACCATATCTACGTTCTTTGTCATGTTGAGGGAAACCTCTGCCTTTGGACAGATGCATTTGCGTAGATTTTTTTCCAACTTCTGACAGGCCTGGACCAACATTACTTGACATGTAATCTATTAAGCGTGGGTTTTATTTTTGTTGAGCTATGTTACCATCTGTTTAGACATTGTTTCACTTTTTCTATGAACAATCATGCAATACATGGATTGGAAGGAGGGTTTCCTTCATTGTTcaactaaataaaacagaaatacaacAATTTCTTTATTCAGGAAAA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: bridging integrator 3-like

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20120 BIN3; bridging integrator 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621485.2 True 1954 mRNA 0.44 9 56137547 56175403

Neighbor

gene id symbol gene type direction distance location
egr3 LOC106579855 coding upstream 548 56127152 ~ 56136999 (+)
LOC110536010 LOC106579856 coding upstream 100247 56028141 ~ 56037300 (+)
slc25a37 slc25a37 coding upstream 284754 55842033 ~ 55852793 (+)
entpd4 LOC106579862 coding upstream 319708 55809180 ~ 55817839 (+)
chmp7 chmp7 coding upstream 334388 55800266 ~ 55803159 (+)
ubl4a LOC106579850 coding downstream 67576 56242979 ~ 56246219 (+)
si:dkey-32e23.4 dnm1l coding downstream 72530 56247933 ~ 56266701 (+)
disp3 disp3 coding downstream 94526 56269929 ~ 56283982 (+)
LOC110536021 LOC106579845 coding downstream 210911 56386314 ~ 56434657 (+)
LOC100136173 LOC100136173 coding downstream 479179 56654582 ~ 56670449 (+)
G995541 NA non-coding upstream 169165 55870807 ~ 55968382 (+)
G995540 NA non-coding upstream 267103 55870108 ~ 55870444 (+)
G995531 NA non-coding upstream 279540 55857771 ~ 55858007 (+)
G995500 NA non-coding upstream 293043 55777539 ~ 55844504 (+)
G995751 NA non-coding downstream 57180 56232583 ~ 56232918 (+)
G995699 LOC106578697 non-coding downstream 58586 56233989 ~ 56234484 (+)
G995760 NA non-coding downstream 109400 56284803 ~ 56287035 (+)
G995776 NA non-coding downstream 113006 56288409 ~ 56290216 (+)
G995782 LOC106579847 non-coding downstream 121852 56297255 ~ 56326423 (+)
G995607 NA other upstream 132680 56002854 ~ 56004867 (+)
G995364 NA other upstream 618373 55518709 ~ 55519174 (+)
LOC110535064 cabin1 other upstream 625337 55489662 ~ 55577699 (+)
G995268 NA other upstream 780431 55355201 ~ 55357116 (+)
LOC110536038 LOC106579834 other downstream 876706 57044708 ~ 57072429 (+)
G997824 NA other downstream 1612065 57787468 ~ 57789171 (+)
G998557 LOC106588150 other downstream 2126182 58301585 ~ 58302987 (+)
LOC110536086 LOC106580340 other downstream 3188498 59363887 ~ 59371838 (+)

Expression


Co-expression Network