LOC110536038 (LOC106579834)


Basic Information

Item Value
gene id LOC110536038
gene name LOC106579834
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 57044708 ~ 57072429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621541.2
TCCCACTTCCAGGAGTCTTGTGTCTTCGGCCGCTGTTGCTGCtcattaccacgccgcttggtccttgtttggtgggtgattctgtaatggttttcctcctcttcgtctgaacaggagaggcgagaaggattggaggaccaatatgtggcgtgGCATCTAGTACCAGTCTCTTCCTGTCCATATGGTGTAACTCTGTGAGCTTAAGCACTGGACTACATGCATCCTCAGaaccccctccatcccctcctggCATCATCGGATATACAGTATGAGTCTGGGAAGTCAGATGTAGGATGATTTCTCTGTCAGCTACTGTCAGCTATGTAAAGCTGCTGTCCCTGTCCCATTAGAGGCATGCTCGTCAGTGATGTGTAATTGCGTTGCCATTTGTCAGCAAGTTGGTGCTGATGTCGGTGAATGGCTTATCCCAATTGCTCATGCACCTCAGTTGCAAATCTCTTGTTTGTGTTCTCAGCATCAGCAGTTGTTTCGCATTAGGCGATGCAGCTGTACAGCAGTCCAGTAAATATCCCTATCAGAgcccagctagaggaggagagagagggagggagcgtgtgtgatagagagagagaatgagagggaacgagagaaggagagagggagagtagaggaagaTCAAGTGAGAATAAGAGTAAGAGAAAAGGAGTGTTCATTTTACTTCCTAGTCGGTTTTCCTGGGGGAATCTATCAACGACTGCAGAAGAAAATAAAGGGGTAAAATAGAATAGATTTCTGCAGTCATCTTCTCTGGTTAAGGACCTATTGCATTTTGTTTGATTAGACACTCACCTACCGCACGGAGCAGCTAATAACCATGGAGACAGCCCTTTCCACCCCCCATAATATCCAGATCTGTGAGGTGACCTGCGACTCCTTCCGCATCGGCTGGGACATGACCCCTGAGGATACTGCCAAGGCCACACACTTCTTCATTGACCTCAGCCGCAAGGAGGGCGGGGATCCCAACCGCTTCAAGCACAGGGATGTGCCCACCAAATTGGTGGCCAAGGCGGTGCCCTTACCCATGGCAGTGAGAGGCCATTGGTTCCTGAGCCCGCGGACAGAGTACTGTGTTGCTGTGCAGACAGCAGTAAGACAGGCAGATGGAGAGTACCTGGTGTCTGACTGGAGCCAGGTGGTCGAGTTCTGCACAGGGGATTATGCCATGGACCACCTCAAACAGCTCCTTGGCAAAGCGAAGGGTTCTGCTGGAAGATTGCTAAGGTTCTCTGTATTTTATCGCAACCAGCACCCTGATTATTTTCAATATGTCAGAACTGAGTGTGGGGGGCTGATGCGCCCAGCCATGAAAGACAATAGTGGAAGCCATGGCTCTCCTATCAACAGCAAACTGCAGGGAGTCTTCCTCAGCTGCAACACTGAGTTTGACACAGGTCTTCCTCCAAACGACTCCCCCTACGGCCCCCTGCGTTTCCAGATCCCGGCCGGGAACCTGCTGAATCCCAACACCAATCTTTACTTTGCTGACTTCTACTGTATGTACACAGCCTATCACTATGTGGTGTTGGTACTGGCCCCTGCTGGCTCAGAGGGGGATAACTTCTGCCATACCAGTCTCCCCCTGCTGGACTTGACTGCCAACCCCTTCCTGACATACATCCCCTCTCAGAGGCAAGAGGAAGAGTCCTTGTTCTGCCACGCCAGTGATGTCATCCTGGAGGTGCTGTACACAGAGCCGATACATCTGGAGCAGGGCAGTGTGGTGAAGATCAGTGGCCACCACCAGATGAGCCAGACGACGGCCAACGCCAAGAAGGACCCCAGCTGCAAGGTGTGCAACATCAGTGTGGGCCGCTGAGAGAACGGGCTGGACTGACAGGCTTTAGAGAACAGTGAGGATTTGTGTAGGCATAGCTGCAGATGTAGAGAAATGTGCAGAGCGATTTCATCTATCTCATAGTGTAAGGTAAAGTAACACGACTGTGACAGCCCATCTCTTGGGGTATGTGCATGCTGGCTGCCCCATCCCTCTCCGTCGCTACTAGTATTCAAAATCTCCAAAATCATCAATCATCATGTGGACCCAAAGAAAGGCACGATAGATTATGGGCTTACAGTTTGATACAGAGGACCATATGTTTGAGATCCTCCATTGCTAGAGGAAGCTGTGATGTACACATTGTGTAACACTGTATTTGTCGAATAACATTTCGTATGATATATATTCGTATGATATTTCCATATTTTCCTTACAGTACCTGTTGGTCTTAGATGATTCCAAAATGTATTGTACGTTAAAACACACTGTCAACTGAATTACTATTTGAAAATGTTCAAACATTGTTATTGAGTCAATGCTTATGATAAGTGAATAATAAAGATTTGAATTGACTGTAGGATGCCAATGCCCACAACA
>TU1134758
gggagcgtgtgtgatagagagagagaatgagagggaacgagagaaggagagagggagagtagaggaagaTCAAGTGAGAATAAGAGTAAGAGAAAAGGAGTGTTCATTTTACTTCCTAGTCGGTTTTCCTGGGGGAATCTATCAACGACTGCAGAAGAAAATAAAGGGGTAAAATAGAATAGATTTCTGCAGTCATCTTCTCTGGTTAAGGACCTATTGCATTTTGTTTGATTAGACACTCACCTACCGCACGGAGCTAATAACCATGGAGACAGCCCTTTCCACCCCCCATAATATCCAGATCTGTGAGGTGACCTGCGACTCCTTCCGCATCGGCTGGGACATGACCCCTGAGGATACTGCCAAGGCCACACACTTCTTCATTGACCTCAGCCGCAAGGAGGGCGGGGATCCCAACCGCTTCAAGCACAGGGTCTGTCTGACAGACTGTGACTGCTTTTCTCCCTCATACAACCTTCCCCGGCCCCCCCCATCCTTCCCCCTTAACTCAATGACC
>TU1134771
gggagcgtgtgtgatagagagagagaatgagagggaacgagagaaggagagagggagagtagaggaagaTCAAGTGAGAATAAGAGTAAGAGAAAAGGAGTGTTCATTTTACTTCCTAGTCGGTTTTCCTGGGGGAATCTATCAACGACTGCAGAAGAAAATAAAGGGGTAAAATAGAATAGATTTCTGCAGTCATCTTCTCTGGTTAAGGACCTATTGCATTTTGTTTGATTAGACACTCACCTACCGCACGGAGCAGCTAATAACCATGGAGACAGCCCTTTCCACCCCCCATAATATCCAGATCTGTGAGGTGACCTGCGACTCCTTCCGCATCGGCTGGGACATGACCCCTGAGGATACTGCCAAGGCCACACACTTCTTCATTGACCTCAGCCGCAAGGAGGGCGGGGATCCCAACCGCTTCAAGCACAGGGTCTGTCTGACAGACTGTGACTGCTTTTCTCCCTCATACAACCTTCCCCGGCCCCCCCCATCCTTCCCCCTTAACTCAATGACC

Function

NR:

description
PREDICTED: phytanoyl-CoA hydroxylase-interacting protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621541.2 False 2398 mRNA 0.49 6 57044708 57072429
TU1134758 False 517 TUCP 0.50 2 57052109 57063580
TU1134771 True 520 TUCP 0.50 2 57052109 57063580

Neighbor

gene id symbol gene type direction distance location
nkx6.3 LOC106579836 coding upstream 107264 56933972 ~ 56937444 (+)
LOC110536026 LOC106580212 coding upstream 328467 56713839 ~ 56716241 (+)
got1l1 LOC106579841 coding upstream 356583 56677407 ~ 56688125 (+)
LOC100136173 LOC100136173 coding upstream 374259 56654582 ~ 56670449 (+)
LOC110536021 LOC106579845 coding upstream 610051 56386314 ~ 56434657 (+)
LOC110536043 LOC106580381 coding downstream 101867 57174296 ~ 57221198 (+)
LOC110536045 NA coding downstream 189117 57261546 ~ 57298041 (+)
LOC110536634 NA coding downstream 215295 57287724 ~ 57294198 (+)
LOC110536635 NA coding downstream 221892 57294321 ~ 57296546 (+)
LOC110536048 LOC106580394 coding downstream 1140814 58213243 ~ 58217300 (+)
G997104 NA non-coding upstream 2663 57041812 ~ 57042045 (+)
G997098 NA non-coding upstream 11138 57033354 ~ 57033570 (+)
G997096 NA non-coding upstream 12474 57031970 ~ 57032234 (+)
G997081 NA non-coding upstream 45979 56996640 ~ 56998729 (+)
G997078 NA non-coding upstream 56169 56988058 ~ 56988539 (+)
G997142 NA non-coding downstream 32029 57104458 ~ 57131034 (+)
G997152 LOC106579831 non-coding downstream 36735 57109164 ~ 57112796 (+)
G997155 NA non-coding downstream 60918 57133347 ~ 57137614 (+)
G997164 NA non-coding downstream 71975 57144404 ~ 57144736 (+)
LOC110536010 LOC106579856 other upstream 1012172 56028141 ~ 56037300 (+)
G995607 NA other upstream 1039841 56002854 ~ 56004867 (+)
G995364 NA other upstream 1525534 55518709 ~ 55519174 (+)
LOC110535064 cabin1 other upstream 1532498 55489662 ~ 55577699 (+)
G997824 NA other downstream 715039 57787468 ~ 57789171 (+)
G998557 LOC106588150 other downstream 1229156 58301585 ~ 58302987 (+)
LOC110536086 LOC106580340 other downstream 2291472 59363887 ~ 59371838 (+)
LOC110535084 lnpep other downstream 4122662 61180837 ~ 61206347 (+)
LOC110536169 LOC106580482 other downstream 4714834 61787232 ~ 61802788 (+)
G997111 NA non-coding upstream 1833 57050068 ~ 57050276 (+)
G997110 LOC107579696 non-coding upstream 3170 57048366 ~ 57048939 (+)
G997109 NA non-coding upstream 4015 57047893 ~ 57048094 (+)

Expression


Co-expression Network