LOC110536052 (vps33a)


Basic Information

Item Value
gene id LOC110536052
gene name vps33a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58363005 ~ 58378703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036935892.1
CACATGATGCACACCCGCTGGCAGTCACCTGATACTCCCTACTGTCAGAGTAAAAATGTCTGCGCACTTATCCAATGGAAGAGTAAATTTAAACATTTTGAGGGAAGCAGCGCGGAAGGAGCTCCGTGAGTTTTTGGACAAATGTGCAGGAAGCAAGGCTATTGTGTGGGATGAATACCTGACTGGACCCTTTGGATTGATAGCACAATATTCCTTGCTGAAGGAACATGAGGTGGAGAAGATGTTCACCCTCAAAGGGGGGCGTCTTCCTGCTGCTGATGTGAAAAATATAATCTTCTTTGTTCGTCCCAGACTGGAACTGATGGATATTATAGCTGAGAATGTCATCAGTGAGGATAAGATGCATTCCCCACGTGACTTCCACATCCTGTTTGTGCCCCGGCGGAGCATGCTCTGTGAGCAGCGGCTGAAGGAGCAGGGGGTCCTGGGCTCGTTCATCAACATAGATGAGTACATCCTAGACCTCATCCCTTATGATGGAGACTTGCTCTCCATGGAGTCTGAGGGGGCCTTCAGGGAATGCTATCTAGAAAGTGACCAGACAAGTCTTTACCACACCGCCAAGGGCCTTATGACCCTCCAGGCTCTGTATGGGACCATCCCCCAGATATTTGGGAAAGGGGAGTGTGCACGGCATGTAGCTAATATGATGCTTAGGATGAAGAGGGAGTTTGCTGGCAGTCAGACTCAGATCCTGCCTGTGTTTGACTCACTGCTGCTGCTGGACCGTAACATAGACCTGCTTACCCCTCTGGCCACACAGCTCACCTATGAGGGCCTCATTGACGAAGTTTATGGAATCACCAACGGTTATGCGAAGTTGCCTCCGGAGAAGTTTGCTGCCCAAAAGAAGCAGGGTGAGGTGGGTAAAGACCTGCCCACGGAGCCCAAGAAGATGCAACTCAACTCAGCGGAGGAGCTGTATGCTGAGATACGGGACAAAAACTTCAACGCCATAGGTGCTGCACTGAGCAAGAAGGCCAAGATCATCTCTGCTGCCTTTGAGGAGCGACATAATGCCAAAACAGTTGGCGAGATAAAGCAGTTTGTGTCCCAGCTGCCCCACATGCAGGCAGCACGGAGCTCGCTGGCCAATCACACCTCCATAGCTGAACTCATTAAGGACATCACCACCTCAGAGGCCTTCTTTGATAACCTGACAGTGGAGCAGGAGTTTATGACTGGAGTTGACACAGACAAGGTTAACACATATATTGAGGACTCTATTGCCCAGAAGGATCCTCTGATTAAAATCTTACGGCTGGTCTGTATGCAGTCAGTCTGCAACAATGGCCTCAAGCAGAAGATATTGGACTACTACAAGAGAGAGATCCTGCAGACCTATGGATATGAACACATGCTTACCCTCAACAACCTGGAGAAGACAGGTCTTCTGAAGCCCCAGACAAGCACCAGGAATAACTACCCCACCATCAGGAAGACACTCAAACTTTGGATGGAGGATGCCAACGAACAGAACCCCAATGACATCTCCTATGTGTACAGTGGTTATGCTCCTCTCAGCATCCGTCTGACCCAGGTGTTGGCCAGGCCCGGCTGGCGCAGCATCGAGGAAGTTCTGAAGATGCTCCCTGGTCCACACTTTGAGGAGAGACAACAGCTGCCTGCTGGTCTCCATAAGAAACGCCAGCAGGGGGAGAACAGGACCACCCTGGTGTTCTTTCTGGGAGGGGTGACTTACGCAGAAGTTGCTGCCCTGCGCTTCCTGTCTCAGATGGAGGATGGTGGCACAGAGTACATCATTGCCACTACCAAGCTCATCAATGGTACCAGCTGGATCAAGTCTCTGATGGACCGCCCGGAGGCCCCCTGAGCCTGCTGCCCGCTCCCTCTGGGAACAGATGCACAACAGACACATCAAACAGTCAGAACAAAAGACCTTGCCGCTTCTTTTTAATGTCCATATTCCAGCGCCCTGCAGGTGTGTCTGATTGATCTCAGCAACTGTCAGTGTGAGGTGACCAGGAGTCAGCTCCTCGATTCTCCCTGTCCTTTGCCTGCAACTCTAACAGCTTGCTAAATGCACATCTCCATTGCCACCTGCTTTGGTCATTGTATGGAGCTGAGAAGATATCATCTTACTTGTGGCATGATGGAAGGTTTTAAGatcattgtaaaaaaatatatatatactgtattaacatAAAGGCTGAAAGGTAGATGCTTGTATTATTTTTGTGATTTCAACCTATATTTTGTGTTGTACAGTATAGGGGTTTTCTCTCTGCTTGCCATTATTTGTGGGAAAAGTAGTCCTGTAAATAAAATGTGTAATTGACTGCTGATTACTGCTTTTATAACCAGAGTCAATGTCAGGTCTCTAAAAAAAACTGGCCATTTTAACATTTGGCCTTATACTCTACAATGTGGCTAAATGTTTTTCTGGTTTAGAAAACAAAACTAAAAAGTCTGATGTAAAGTTGTACTGCACCTCCATTACACTCCCTATTCCACCTTCGACATGTAGGCTCTAAAAGCCTTGATAACAGTGAATTAGGCCACATGCATTGTTACTTAATGAGTTGTTTATCCTGTAGAAGAAAATAAAGATGGTACCAAAGGA
>XM_036935893.1
GAACATGAGGTGGAGAAGATGTTCACCCTCAAAGGGGGGCGTCTTCCTGCTGCTGATGTGAAAAATATAATCTTCTTTGTTCGTCCCAGACTGGAACTGATGGATATTATAGCTGAGAATGTCATCAGGTCAGCATCCCAGGGGGAGTGAGGATAAGATGCATTCCCCACGTGACTTCCACATCCTGTTTGTGCCCCGGCGGAGCATGCTCTGTGAGCAGCGGCTGAAGGAGCAGGGGGTCCTGGGCTCGTTCATCAACATAGATGAGTACATCCTAGACCTCATCCCTTATGATGGAGACTTGCTCTCCATGGAGTCTGAGGGGGCCTTCAGGGAATGCTATCTAGAAAGTGACCAGACAAGTCTTTACCACACCGCCAAGGGCCTTATGACCCTCCAGGCTCTGTATGGGACCATCCCCCAGATATTTGGGAAAGGGGAGTGTGCACGGCATGTAGCTAATATGATGCTTAGGATGAAGAGGGAGTTTGCTGGCAGTCAGACTCAGATCCTGCCTGTGTTTGACTCACTGCTGCTGCTGGACCGTAACATAGACCTGCTTACCCCTCTGGCCACACAGCTCACCTATGAGGGCCTCATTGACGAAGTTTATGGAATCACCAACGGTTATGCGAAGTTGCCTCCGGAGAAGTTTGCTGCCCAAAAGAAGCAGGGTGAGGTGGGTAAAGACCTGCCCACGGAGCCCAAGAAGATGCAACTCAACTCAGCGGAGGAGCTGTATGCTGAGATACGGGACAAAAACTTCAACGCCATAGGTGCTGCACTGAGCAAGAAGGCCAAGATCATCTCTGCTGCCTTTGAGGAGCGACATAATGCCAAAACAGTTGGCGAGATAAAGCAGTTTGTGTCCCAGCTGCCCCACATGCAGGCAGCACGGAGCTCGCTGGCCAATCACACCTCCATAGCTGAACTCATTAAGGACATCACCACCTCAGAGGCCTTCTTTGATAACCTGACAGTGGAGCAGGAGTTTATGACTGGAGTTGACACAGACAAGGTTAACACATATATTGAGGACTCTATTGCCCAGAAGGATCCTCTGATTAAAATCTTACGGCTGGTCTGTATGCAGTCAGTCTGCAACAATGGCCTCAAGCAGAAGATATTGGACTACTACAAGAGAGAGATCCTGCAGACCTATGGATATGAACACATGCTTACCCTCAACAACCTGGAGAAGACAGGTCTTCTGAAGCCCCAGACAAGCACCAGGAATAACTACCCCACCATCAGGAAGACACTCAAACTTTGGATGGAGGATGCCAACGAACAGAACCCCAATGACATCTCCTATGTGTACAGTGGTTATGCTCCTCTCAGCATCCGTCTGACCCAGGTGTTGGCCAGGCCCGGCTGGCGCAGCATCGAGGAAGTTCTGAAGATGCTCCCTGGTCCACACTTTGAGGAGAGACAACAGCTGCCTGCTGGTCTCCATAAGAAACGCCAGCAGGGGGAGAACAGGACCACCCTGGTGTTCTTTCTGGGAGGGGTGACTTACGCAGAAGTTGCTGCCCTGCGCTTCCTGTCTCAGATGGAGGATGGTGGCACAGAGTACATCATTGCCACTACCAAGCTCATCAATGGTACCAGCTGGATCAAGTCTCTGATGGACCGCCCGGAGGCCCCCTGAGCCTGCTGCCCGCTCCCTCTGGGAACAGATGCACAACAGACACATCAAACAGTCAGAACAAAAGACCTTGCCGCTTCTTTTTAATGTCCATATTCCAGCGCCCTGCAGGTGTGTCTGATTGATCTCAGCAACTGTCAGTGTGAGGTGACCAGGAGTCAGCTCCTCGATTCTCCCTGTCCTTTGCCTGCAACTCTAACAGCTTGCTAAATGCACATCTCCATTGCCACCTGCTTTGGTCATTGTATGGAGCTGAGAAGATATCATCTTACTTGTGGCATGATGGAAGGTTTTAAGatcattgtaaaaaaatatatatatactgtattaacatAAAGGCTGAAAGGTAGATGCTTGTATTATTTTTGTGATTTCAACCTATATTTTGTGTTGTACAGTATAGGGGTTTTCTCTCTGCTTGCCATTATTTGTGGGAAAAGTAGTCCTGTAAATAAAATGTGTAATTGACTGCTGA

Function

symbol description
vps33a Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to act upstream of or within protein transport and vesicle docking involved in exocytosis. Predicted to be located in late endosome membrane and lysosomal membrane. Predicted to be part of CORVET complex. Predicted to be active in lysosome. Orthologous to human VPS33A (VPS33A core subunit of CORVET and HOPS complexes).

NR:

description
vacuolar protein sorting-associated protein 33A isoform X2

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG:

id description
K20182 VPS33A; vacuolar protein sorting-associated protein 33A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036935892.1 False 2605 mRNA 0.48 13 58363005 58378703
XM_036935893.1 True 2123 mRNA 0.50 11 58363626 58378425

Neighbor

gene id symbol gene type direction distance location
LOC110536048 LOC106580394 coding upstream 145705 58213243 ~ 58217300 (+)
LOC110536635 NA coding upstream 1066459 57294321 ~ 57296546 (+)
LOC110536634 NA coding upstream 1068807 57287724 ~ 57294198 (+)
LOC110536045 NA coding upstream 1090447 57261546 ~ 57298041 (+)
LOC110536043 LOC106580381 coding upstream 1141807 57174296 ~ 57221198 (+)
LOC110536057 tmed2 coding downstream 6135 58384838 ~ 58388400 (+)
LOC110536055 rabx5 coding downstream 23209 58401912 ~ 58406665 (+)
LOC110536058 psmd9 coding downstream 28238 58406941 ~ 58411547 (+)
cfap251 wdr66 coding downstream 32950 58411653 ~ 58421796 (+)
LOC110536056 bcl7a coding downstream 43316 58422019 ~ 58429244 (+)
G998570 NA non-coding upstream 10225 58332492 ~ 58352780 (+)
G998515 NA non-coding upstream 105637 58257090 ~ 58257368 (+)
G998504 NA non-coding upstream 116260 58246226 ~ 58246745 (+)
G998503 NA non-coding upstream 116957 58245771 ~ 58246048 (+)
G998502 NA non-coding upstream 118127 58243995 ~ 58244878 (+)
G998784 NA non-coding downstream 192095 58570798 ~ 58571059 (+)
G998786 NA non-coding downstream 199242 58577945 ~ 58580187 (+)
G998785 NA non-coding downstream 205621 58584324 ~ 58585106 (+)
G998846 NA non-coding downstream 297046 58675749 ~ 58682620 (+)
rilpl2 LOC106580358 non-coding downstream 342368 58720940 ~ 58724224 (+)
G998557 LOC106588150 other upstream 60018 58301585 ~ 58302987 (+)
G997824 NA other upstream 573834 57787468 ~ 57789171 (+)
LOC110536038 LOC106579834 other upstream 1299425 57044708 ~ 57072429 (+)
LOC110536021 LOC106579845 other upstream 1929734 56386314 ~ 56434657 (+)
LOC110536010 LOC106579856 other upstream 2330469 56028141 ~ 56037300 (+)
LOC110536086 LOC106580340 other downstream 985198 59363887 ~ 59371838 (+)
LOC110535084 lnpep other downstream 2816388 61180837 ~ 61206347 (+)
LOC110536169 LOC106580482 other downstream 3408560 61787232 ~ 61802788 (+)
G1002117 NA other downstream 3922474 62301177 ~ 62302835 (+)
LOC110536190 LOC103397138 other downstream 4112478 62490915 ~ 62494341 (+)

Expression


Co-expression Network