LOC110536072 (LOC106580351)


Basic Information

Item Value
gene id LOC110536072
gene name LOC106580351
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 58883760 ~ 58889515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621604.2
GGTGGTGGTCTCATTGGTCAACAGTATTTCGATTAGCGAATCAGATACTAGATACTTGTGCGTCACTTGGTAGCTGCTTTCAGGAAACGCTTGCTAACATGATTTGCATTAACTATCTTGGAAATCAGAAAGCTAGCTAGGGTGAAACTAAAACAAAGTAAGCAGCACAAGGGCTTTCTTGTCTCTCGAAGTTTATTCTGACATTAGCTATTGAAAACAGAGATTTAAAGCCTAATCTTTAGCTAGCTACTAGCCAACTAACGCCTAGCTACCAGCGAAGTAAACAAGGGACCAAGTCACGGCAGCAGGAGCCATGGCAAATGAAAGCACACAGTTTTGTGCCAATTGtcAGCATGACATTCCAGAGGCTAATTTCACTACTCATGAGAGTCACTGTCGCCGGAATATTGCTCTGTGTGATGTATGCCAAGAGCCAGTGCCCCGTTCAGATCTGCAGCAGCACAAGGAACAGGAGCACATGCAGGTGAAATGTAAGTGCGGTTTAAAGATTGAGAAAAGCCTCATGGAATCTCACCAGAGATCTGAGTGCAATCAGCGGATGGTGCCGTGTCAGTACTGTGAACTGGAGCTGGTTTTCAGTCAGTCCAAGGAGCATGAGGATTATTGTGGGACGCGCACAGAGCCCTGTCAATTCTGCAAGTGCAATGTAATGTTGAGGGAGCAAGCTGTCCATCCAGCCTTGTGTGGTAGCCTCACACCACCTCAAGAGAGAAACAACAGCCGGGCAACTCTCAGCCCAGCAGAGACCCagtctccaggaacatggtttgAATCTCATTCCATCCGTAACCTGCTGAGGGCCCAGGAGGGAGAAGGCCACAAGAACAACAACGCCAGTGCGTCTGACCGCAGGGCCCTACCGCGGCCACTGGAGTCCAGAGTGCACAACAGCACCCGGGGGCAAGTGGGCCAGGGAGGAAGGGGGAACATTGCCCCTAGGAATACAGACTTCAGCCACTTGCTGGAACAGGAAGCTGCAGTGCTGGGCAACAACAATAACAGCATGGCATCATTTGCATGGCCTGCAGACAAACCACTGGGAGAAGACTCTGCCAGCCTGGACTACCTTTTGGCCCTTAGCCTGCAGAGTGATGGAGACACAGGGGATGTAGGGGGAGGAGCGGGGGCattgtggacagatgtctgggACCACAAATTTGGAAGGATGTCCAGCAGCGGCTCTCTTATCTCTCCCCCTAATAACAACCACCAACATGTCACCACTGGCACCAATACAGCACCAGAACATGACCAGACAGACACCATgttgccctgtgagttctgtgaGAAGCTGTTTCCTGAAGAGGACCTCATTTTACACCAGACTGGCTGTAGTCCTGCCTCAGCCTTTGCATCTTTCAGCAAGCGACCTCCATCTCCATGCTACGATGGCAGGATTGCTAGGGGTGCTGGTGGTCTTCTGCACATCCCACCTGACACCCCTAGCTTCCCCCGTTCAGTCTCCCAGCTTTCCTACAGTCCACCTGCCAGTCCACTACAGAGAGACGTGGTCATTCCCTGTGAGTTCTGTGGAGTAGCCCTGGAGGAGGCCGTTGTCTTTCACCACCAGGATAAATGTGACCTCCGACCTCGCACGGCTCCCTTAGTGGATAAGGTCAACAAAGTGTCCTTTCAAAAACCATCTCTTCCTCTCAAAGAGAGCCGTGGATGGAGCTCCTCTGAGGTGCAGAGGAGACTCAAGCACCAATTGGTCCCCTTGGATGGGCTGGACAGAGAGAAGCCCCAGGTGCAAAGCCCAAATGAATGGCAGAGAGTCCACAGTGTGCTACCCATTCCAGGGAAGATCTCAAACTGTGATCCTCAGGTGAAGAACAGGCCCCAGCATGGGAATGAGGCAGAGGGGGGCCACTTGCTATTCAGTGAAGGCCACAAATCCAACTCTGCAGCAGCTGTGGGACCTCCCCTAAGAGAAAACAATGAGGGACCAAGGATTAAAGGACCAAGGAATGCAGGGCCATCAAAGGTGCCTAAGAAGCAAAACAAAGAACAGGAAGATGAGTGAGGGCAAGACTGTCGATGGAAAGAGCTGCAGACAATCACCAAGTGCTTTTTCTGTGTGCGGTAGTCTGTCACTCTAACAGTGGTGGCGTTACTGGCTGGCTACATTGCCGATGCCTGCCAGATCTCACTACACTTGGGAAGGTGTTTAACATATCAGCAAACCACAAATTGTATAACAATCTGATGCCAGATTGTGCATCAGAAGTTGTGGCGCAAACCAGTGGTTGATGCAATGCAATGTAGTCCTCTTGGAACATGACCAGAGTCTCTttattccctgtgtgtgtgtttctgtatgtttcAGTTGCTCTTTCTTTTTAAAGTCTAAAGAGTGAAACTGAAATATTTGAATGATTCCAATAGTTTGTAATATAACTTTCAGCTTTTTGTAATCTTTTAAACGTTTAATATAAATTGTATAGAATTTAGGAAACCCACCTTAATATACTCTTGAAAAACCTATGTAAAAATGTGTACAGGTATGTAAGAAATCTTAAAGCTCCACAAAGAAATTGTACTCTTCACTGAATAATGCAAAATCAATGACACATACAGTATCAAAGCATTATTTGTATTTCGGGCTGCACCTATTGAACTGTTTGTTTTTTGTATGCTTTGTGATATTATCTTCATACTTTTAATAAATCCTTAGTATCAATGTT

Function

NR:

description
TRAF-type zinc finger domain-containing protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621604.2 True 2705 mRNA 0.48 12 58883760 58889515

Neighbor

gene id symbol gene type direction distance location
mob1a LOC101160416 coding upstream 1774 58867994 ~ 58881986 (+)
LOC110536071 pitpnm2 coding upstream 32441 58762601 ~ 58851319 (+)
rilpl2 LOC106580358 coding upstream 160973 58720940 ~ 58724224 (+)
LOC110536067 LOC106580357 coding upstream 163276 58692093 ~ 58720484 (+)
hip1rb hip1r coding upstream 193402 58649753 ~ 58690358 (+)
smtnb LOC106580347 coding downstream 785 58890300 ~ 58955743 (+)
LOC110536079 LOC106580349 coding downstream 67392 58956907 ~ 59002382 (+)
LOC110536081 LOC106580346 coding downstream 128737 59018252 ~ 59024137 (+)
LOC110536082 LOC106580344 coding downstream 158162 59047677 ~ 59052881 (+)
LOC110536636 NA coding downstream 184523 59074038 ~ 59078690 (+)
G998886 NA non-coding upstream 21017 58860629 ~ 58862743 (+)
G998887 NA non-coding upstream 23502 58859397 ~ 58860258 (+)
G998885 NA non-coding upstream 26001 58855210 ~ 58857759 (+)
G998957 NA non-coding downstream 5566 58895081 ~ 58895382 (+)
G998970 NA non-coding downstream 26940 58916455 ~ 58916674 (+)
G998949 NA non-coding downstream 115953 59005468 ~ 59006695 (+)
G999301 NA non-coding downstream 135878 59025393 ~ 59025692 (+)
G999305 NA non-coding downstream 141026 59030541 ~ 59030873 (+)
G998557 LOC106588150 other upstream 580773 58301585 ~ 58302987 (+)
G997824 NA other upstream 1094589 57787468 ~ 57789171 (+)
LOC110536038 LOC106579834 other upstream 1820180 57044708 ~ 57072429 (+)
LOC110536021 LOC106579845 other upstream 2450489 56386314 ~ 56434657 (+)
LOC110536010 LOC106579856 other upstream 2851224 56028141 ~ 56037300 (+)
LOC110536086 LOC106580340 other downstream 474386 59363887 ~ 59371838 (+)
LOC110535084 lnpep other downstream 2305576 61180837 ~ 61206347 (+)
LOC110536169 LOC106580482 other downstream 2897748 61787232 ~ 61802788 (+)
G1002117 NA other downstream 3411662 62301177 ~ 62302835 (+)
LOC110536190 LOC103397138 other downstream 3601666 62490915 ~ 62494341 (+)

Expression


Co-expression Network