LOC110536636


Basic Information

Item Value
gene id LOC110536636
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 59074038 ~ 59078690 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475499.2
ATGAAAGCCACTGAGGACATTACAAAAACGTAGAGTTTTCATCCACAAGCTAATTGTTTGAATGGCTAAATAACTGACCAGTGCACCAGGGGTACTTGCTACTGTGATTCCTGAAATGCAGAGCCTAACAAGTTGAGAGCCCGACTGACTTCTTAGATCAGGTGCCCCCTAAGCAACCGCTTATGTCGCTAATGCCTGGAGCTGGCCCTGGAAAGGACTCAGCCATGTCTAATTTGCACTGTCATACTTCTGAGTCTTCAGCCATGTCCAAATACAGATCCCAAATCTGGTAGGACTGGAACAGTAGGACCGAGAAGACCACCAGGACCAGAAGGGCCAAGTGGTTTCTGTGGCATCGCCACAAAATCTGCCATGCGGCTGGGCTACAACTACCCCCGAACCATGCCACCCCATATAATTCCGTGAGGTCATGGACAGAACAAAGTTTGAGTTTCATTGCATCATATACCAGAATGTGGGCAACATGGAACTGCTGAAAAAACGGCCAGATGGTGCTGCCCTCCTTCACCACCCAGCAGAATGGCTACATCACAGCCACAGGAGGCACACCGCTGCAGGTCAAAAAGGGGGGTGAGATCTGCCTGTCAGCTAACTATGGTGGCAACGGCATGACCTCTGACAGCTTCTCTCAGGGCACCTGATCTTCACTGTCTGGAGCCCATTCTGACCTGGACACTGATCCCAAAACACAACCACTCTGACACACAGGTTAGAACTAAGCTAAGGTTCTGTATTTTAAAAGAGAGatattttatttttctttcaAAAGACTCTTTTAACTAATGTTAATCTTTATCACATATACAATGAAAAGAGAGGTCAATTGACTGTTTTGTTATATTTGCACTGAAGTTTGTTATACTTGCACATGAGTGGGAGAGTCATTGCATGCCacatgtgtctctctttctctttcctctatcTTTCACGTTTTTTCACCAAACCAACACCAATGCCTAAacagtgtatctgtgtgttgacccaatccctctacccccccaaaCCCAATTATTGTTGTTAGATTAAATTAATCTTACCACATCAGGGAAATGCAATGTGATAACTTTTTGATTGTTAATTGCATTATTTCTTCTAATTATTGGTATGTGTTTTCCTTCTTATGAACTTTAAGGCTAATTAAATTATATAGTTTAGGTCTTGCACATAAAACACATAGGAACAAAATCTAACTTAATATGTGCTAATTATGAGTTTTTGGGTGATGGTGAAATTATGACAAATAAGAACAAACTCAAAACTATGCTCAGGGAGCCTACCTGCTGCATTGGGTCGGGCAAACCATTGAATTCTAAAGCTAAAGACTGAATATTTATGTAGTAAACTTCAGATGTAAATTATTATAAAGAAAATACTTTAAAACTAGATGTTGTATTTTCACATataccggataggtgcagtgaaatgtattGTTTTACAAGATCAGCCATAGTAATACGGTGCCCCAgaagcaaattagggttaagtgccttgctaagGGGCACAGCAACACATTTTTTCAACTTGTCGGCTTGGCCCTTCAAATCTGTTTTTGATAAACAATTATATTCTGACTGTTTCATCTTTCgaaaaaatgaatacaaataaatacaacaaTAAAATAACTCATGCACATACTCTGTGCTTTCTGTCACCTCAA

Function

NR:

description
PREDICTED: eosinophil peroxidase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475499.2 True 1678 mRNA 0.41 4 59074038 59078690

Neighbor

gene id symbol gene type direction distance location
LOC110536082 LOC106580344 coding upstream 21157 59047677 ~ 59052881 (+)
LOC110536081 LOC106580346 coding upstream 49901 59018252 ~ 59024137 (+)
LOC110536079 LOC106580349 coding upstream 71656 58956907 ~ 59002382 (+)
smtnb LOC106580347 coding upstream 118295 58890300 ~ 58955743 (+)
LOC110536072 LOC106580351 coding upstream 184523 58883760 ~ 58889515 (+)
LOC110536084 LOC106580343 coding downstream 4062 59082752 ~ 59120896 (+)
LOC110536085 LOC106580341 coding downstream 93869 59172559 ~ 59363415 (+)
LOC118937474 NA coding downstream 188566 59267256 ~ 59267310 (+)
LOC110536086 LOC106580340 coding downstream 285197 59363887 ~ 59371838 (+)
LOC110536090 LOC106580338 coding downstream 310510 59389200 ~ 59393203 (+)
G999316 NA non-coding upstream 13406 59060379 ~ 59060632 (+)
G999313 NA non-coding upstream 30621 59043098 ~ 59043417 (+)
G999305 NA non-coding upstream 43165 59030541 ~ 59030873 (+)
G999301 NA non-coding upstream 48346 59025393 ~ 59025692 (+)
G998949 NA non-coding upstream 67343 59005468 ~ 59006695 (+)
G999487 LOC106580334 non-coding downstream 297740 59376430 ~ 59376676 (+)
G999374 NA non-coding downstream 306122 59384812 ~ 59385587 (+)
G999495 NA non-coding downstream 323101 59401791 ~ 59402224 (+)
G999496 NA non-coding downstream 323768 59402458 ~ 59402819 (+)
G998557 LOC106588150 other upstream 771051 58301585 ~ 58302987 (+)
G997824 NA other upstream 1284867 57787468 ~ 57789171 (+)
LOC110536038 LOC106579834 other upstream 2010458 57044708 ~ 57072429 (+)
LOC110536021 LOC106579845 other upstream 2640767 56386314 ~ 56434657 (+)
LOC110536010 LOC106579856 other upstream 3041502 56028141 ~ 56037300 (+)
LOC110535084 lnpep other downstream 2116401 61180837 ~ 61206347 (+)
LOC110536169 LOC106580482 other downstream 2708573 61787232 ~ 61802788 (+)
G1002117 NA other downstream 3222487 62301177 ~ 62302835 (+)
LOC110536190 LOC103397138 other downstream 3412491 62490915 ~ 62494341 (+)

Expression


Co-expression Network