XLOC_028442


Basic Information

Item Value
gene id XLOC_028442
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4162825 ~ 4163876 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057996
CTGTTTTCTCACTGTTCTATTTAATTAGGTCACTGGATCAGAACTGCAGGAGTGATTGTAGCAAGTCCCTGAACAGCCTAACTTTATTCACCTCTAGACTTTATCCCTAACCGTCTGCTGCTATTTGATCTATCTGATGGTGGTATCAGCTCTGACTGATTCTTTGGTTAAATctgtttttcaacattttcacTGGGACTTTATTAGCATTTGAAGTTGTGCATGTCATTTTAACGTCTCGTAGACTTTAAATGAGGTGATAGACATCAGTTTTAAGATGTGCAAATATGTAGTGTTTTGAGTGTGTAGTATACAGATCTGCCAAGTGTGTATTGTAAGTGCATTAAAGTGCTTATTTTAGTCTTCCTGGATGAGTTGGAAGAAGCTCATGGGTTTTTAGTAGTACAACACTAAGAAACCTTGTAAATAATTAGTGCTCTTAAATCTGTCTTCCTTTTGACATGTTAAGTTTTAACATGTCCAGGCAGTGATGACTAACACATTCGTCTCAATAATGggtCTCTGGATCTGAGGTGAAGGAGTAACACTGGCATGGAGTCCTTCAACAGCTGACCTTAATTCACCTTTGACTTATTCCTGAGCAGCCTCTGTCTGCTGCTCTTGTATCCATCTGATGGTGGTATCAGCTTGGACTGATTGTTTGGTTAATCTGTGCTTTAAACCATCTTCATAGAGCCTTTACTAGCACTTCACATTTTGCATGTCTTTTTAAATGAGGTGATGGACATCAGTTGTAATTAATACATGAAAATGTAGTGTTGGAGGGCTCCTGGAGTGGTTAATGTTTTTGTGTAGTATAAATGTGCCAGGTGTCTTTGTTTGCAAAATAAAAggttaaatgtgat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057996 True 866 lncRNA 0.38 2 4162825 4163876

Neighbor

gene id symbol gene type direction distance location
XLOC_028441 NA coding downstream 5290 4147628 ~ 4157535 (-)
XLOC_028440 asb15b coding downstream 33638 4120570 ~ 4129187 (-)
XLOC_028439 lmod2b coding downstream 43400 4115778 ~ 4119425 (-)
XLOC_028438 NA coding downstream 210700 3949226 ~ 3952125 (-)
XLOC_028437 NA coding downstream 229665 3932533 ~ 3933160 (-)
XLOC_028443 NA coding upstream 14958 4178834 ~ 4229155 (-)
XLOC_028444 NA coding upstream 43714 4207590 ~ 4210464 (-)
XLOC_028445 cd9b coding upstream 71118 4234994 ~ 4261673 (-)
XLOC_028446 CU468826.1 coding upstream 157292 4321168 ~ 4374704 (-)
XLOC_028447 CU468826.3 coding upstream 212622 4376498 ~ 4387012 (-)
XLOC_028436 NA non-coding downstream 340977 3820858 ~ 3821848 (-)
XLOC_028435 NA non-coding downstream 342841 3813618 ~ 3819984 (-)
XLOC_028450 FP102892.1 non-coding upstream 350562 4514438 ~ 4516508 (-)
XLOC_028461 NA non-coding upstream 776591 4940467 ~ 4962892 (-)

Expression


Co-expression Network