zgc:152830 (LOC106580446)


Basic Information

Item Value
gene id zgc:152830
gene name LOC106580446
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 62920442 ~ 62927483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621841.2
TGTCAGCttgctgtctctttccctctagACGTCGGAAGGACAGCAATGTGTGCCCGtTATGATGGAATAGTCTTGGTGACGCAGAGTTATGACACGCTGCCCAAGGAGCTGCAATGTCTGAAAGCACCTCTGCTGGACTACAGCTCTGTGGACTGTGGTCTGGGAGATGAGGTGGTGCTGTTGAAGGTTCCGGGGTTGCCTGGTAACCGCTTGGTGTTTGCGTCCACCGGGCCTGTTAACCGGGACTACGATGATGTCAGACGCTTCAGTGACGCAGCTGTTAATGGCATCAAGAGGGCCATGAAAGCAGGCATGCAGCGCCCCCTTTTGGTCTGTCCTCGCCATAGCAGCTATGACAGGAGCACCCTGGTGGCTGCCCTAGGTGCCCTGCACGCCCTCTACATGcctctggaAGTGAGGGAGGCGTCTGTGAAGCCTAGCCAGTATAAGGTGTGTGTTCTGGGGCTGTGGGTGGACCAGGAGGCCCAGGGGAAGGAGTTAGTGGATCTGGCCTCTGCTCTGGAGAGTGGACggcTGGCTTGCCGCGACATAGGAGGGTCCGATCCTGAGAGGATGGCTGCTCCTCGTGTAGCTGAGTACATCCAGGCCCTCTTTAAGGACAGCCCAGTGCAGGTAGATGTGGTGAGTGATCTGAAGGTGCTGGAGAAGGAGTACCCTTGCCTCGCTGCTGTCAACCGCTGTGCCaatgCTGTGCCTCGTCACCAGGCCAGAGTGATCAAGCTGCAGTACTGTGGAGAAGGACCAGTCCAACACACACTGATGCTGGTCGGCAaggGCATCACCTATGACACCGGTGGAGCTGACATCAAGGCTGGTGGCTTCATGGCTGGCATGCACAGAGACAAGTGTGGTGCTGCTGCCGTGGCTGGGTTCTTCCAGGTCCTGGCCAAACTCAAGCCCAAGCATCTGAAGGTGGTCGGTGCCATGGCGATGGTCAGGAACAGCGTGGGCTCAGACTGCTACGTAGCTGATGAGTTGGTGGTGTCCCGTGCGGGTCGCAGAGTTCGTGTGGGGAACACAGACGCTGAGGGACGCATGGTGATGGTCGACCTGCTCTGTGAAATGAAGGAGAAAGCGGTATGTGAGGTGtctcctcagctgtttaccatcGCCACTCTGACAGGACACGCCATCAGAGCCATGGGACCAAACTACTCTATCATCATGGACAACGGAGCTGCCCAACGCTCTGGCACTGCCCGGCAGTGGCAGAAAGcgGGAGAGGTGCTGGGTGATCTGTTTGAGGTGTCCAGTATCAGGCGTGAGGACTATGACTTCCATAAGGGGAAGTCTGAGTACGAGGAGATTCTGCAGAGCAACAACCTGCCATCCTCTGCTACTCCCCGCGGACATCAGACCCCCGCTGCCTTCCTCATCATGGCCTCTGGGCTGgacaagTATGGTGTGGACTCTGGCAGTCCTCTGCCATACTCTCACATCGACATTGCTGGCTCCAGCGGCCCCTTCCCCGGTGTACCCACCGGAGCGCCAGTCCTTGCCATGGCTACCAACTACATCCTGCCCAGCGCCTAGCAACCCAACTACACCCTGCCCAGTGCTTAGCAACCTTGTGATATAAGAATGTGTAGAATGTACCCTACTCTGTCCTGAGTTATATCACATATAACCGTCCTAATATGGTAGTGCCAGTACAATTTGATATATTACACAAAGAATAAGAACAGACATCCATCAATGGTGTGATATTGGCAGTTAATTTCAAACATTCCAAGAGCTCAGGTTGTTGTTCGATAGATTCTGTTTCTAAGATCATGCAAATATATATCCATCCAACCTTAAGTGTCCCAAATGTTTTACCCCCATGTCTAACATGAGTCACTGTATTGAATACTCTCAGGGGAGAAATGACATGCTCTGTTCATCCATCCATTTTATACACGTGAAACTTGAGCTGAGTGGCAAGTCAAATGGTTGTGTGCTTCAATAAAATAATCAATTTTC
>XM_021621840.2
TCCCATGATTACATTTAAAGAACGTTGATAAATCAGGTGATCAACCAGAGGGAGGCTTCGTTCTGTCAGCttgctgtctctttccctctagACGTCGGAAGGACAGCAATGTGTGCCCGTGTCCAGCCCATCGAGTGGACCACTGACTGTAAAAGCCAGAAtTATGATGGAATAGTCTTGGTGACGCAGAGTTATGACACGCTGCCCAAGGAGCTGCAATGTCTGAAAGCACCTCTGCTGGACTACAGCTCTGTGGACTGTGGTCTGGGAGATGAGGTGGTGCTGTTGAAGGTTCCGGGGTTGCCTGGTAACCGCTTGGTGTTTGCGTCCACCGGGCCTGTTAACCGGGACTACGATGATGTCAGACGCTTCAGTGACGCAGCTGTTAATGGCATCAAGAGGGCCATGAAAGCAGGCATGCAGCGCCCCCTTTTGGTCTGTCCTCGCCATAGCAGCTATGACAGGAGCACCCTGGTGGCTGCCCTAGGTGCCCTGCACGCCCTCTACATGcctctggaAGTGAGGGAGGCGTCTGTGAAGCCTAGCCAGTATAAGGTGTGTGTTCTGGGGCTGTGGGTGGACCAGGAGGCCCAGGGGAAGGAGTTAGTGGATCTGGCCTCTGCTCTGGAGAGTGGACggcTGGCTTGCCGCGACATAGGAGGGTCCGATCCTGAGAGGATGGCTGCTCCTCGTGTAGCTGAGTACATCCAGGCCCTCTTTAAGGACAGCCCAGTGCAGGTAGATGTGGTGAGTGATCTGAAGGTGCTGGAGAAGGAGTACCCTTGCCTCGCTGCTGTCAACCGCTGTGCCaatgCTGTGCCTCGTCACCAGGCCAGAGTGATCAAGCTGCAGTACTGTGGAGAAGGACCAGTCCAACACACACTGATGCTGGTCGGCAaggGCATCACCTATGACACCGGTGGAGCTGACATCAAGGCTGGTGGCTTCATGGCTGGCATGCACAGAGACAAGTGTGGTGCTGCTGCCGTGGCTGGGTTCTTCCAGGTCCTGGCCAAACTCAAGCCCAAGCATCTGAAGGTGGTCGGTGCCATGGCGATGGTCAGGAACAGCGTGGGCTCAGACTGCTACGTAGCTGATGAGTTGGTGGTGTCCCGTGCGGGTCGCAGAGTTCGTGTGGGGAACACAGACGCTGAGGGACGCATGGTGATGGTCGACCTGCTCTGTGAAATGAAGGAGAAAGCGGTATGTGAGGTGtctcctcagctgtttaccatcGCCACTCTGACAGGACACGCCATCAGAGCCATGGGACCAAACTACTCTATCATCATGGACAACGGAGCTGCCCAACGCTCTGGCACTGCCCGGCAGTGGCAGAAAGcgGGAGAGGTGCTGGGTGATCTGTTTGAGGTGTCCAGTATCAGGCGTGAGGACTATGACTTCCATAAGGGGAAGTCTGAGTACGAGGAGATTCTGCAGAGCAACAACCTGCCATCCTCTGCTACTCCCCGCGGACATCAGACCCCCGCTGCCTTCCTCATCATGGCCTCTGGGCTGgacaagTATGGTGTGGACTCTGGCAGTCCTCTGCCATACTCTCACATCGACATTGCTGGCTCCAGCGGCCCCTTCCCCGGTGTACCCACCGGAGCGCCAGTCCTTGCCATGGCTACCAACTACATCCTGCCCAGCGCCTAGCAACCCAACTACACCCTGCCCAGTGCTTAGCAACCTTGTGATATAAGAATGTGTAGAATGTACCCTACTCTGTCCTGAGTTATATCACATATAACCGTCCTAATATGGTAGTGCCAGTACAATTTGATATATTACACAAAGAATAAGAACAGACATCCATCAATGGTGTGATATTGGCAGTTAATTTCAAACATTCCAAGAGCTCAGGTTGTTGTTCGATAGATTCTGTTTCTAAGATCATGCAAATATATATCCATCCAACCTTAAGTGTCCCAAATGTTTTACCCCCATGTCTAACATGAGTCACTGTATTGAATACTCTCAGGGGAGAAATGACATGCTCTGTTCATCCATCCATTTTATACACGTGAAACTTGAGCTGAGTGGCAAGTCAAATGGTTGTGTGCTTCAATAAAATAATCAATTTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K01255 CARP, pepA; leucyl aminopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621841.2 False 1983 mRNA 0.54 15 62920442 62927420
XM_021621840.2 True 2088 mRNA 0.53 16 62920442 62927483
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110536211 pcna coding downstream 641 62916347 ~ 62919801 (-)
LOC110536207 LOC106580444 coding downstream 40568 62804837 ~ 62879874 (-)
LOC110536206 LOC106580443 coding downstream 116242 62740236 ~ 62804200 (-)
LOC110536205 LOC106580442 coding downstream 180890 62720355 ~ 62739552 (-)
LOC110536204 NA coding downstream 201408 62714614 ~ 62719034 (-)
gpat2 LOC106580447 coding upstream 7791 62935274 ~ 62986437 (-)
LOC118937456 NA coding upstream 79196 63006679 ~ 63008096 (-)
adra2b LOC106580448 coding upstream 319044 63246527 ~ 63253768 (-)
dusp2 LOC106580476 coding upstream 341142 63268625 ~ 63272680 (-)
LOC110535091 izumo1 coding upstream 348504 63275987 ~ 63278272 (-)
G1003400 NA non-coding downstream 211287 62704461 ~ 62709155 (-)
G1003398 LOC106580440 non-coding downstream 218524 62701616 ~ 62701918 (-)
G1003397 NA non-coding downstream 220265 62699918 ~ 62700177 (-)
G1003392 NA non-coding downstream 246131 62673933 ~ 62674311 (-)
G1003390 NA non-coding downstream 252000 62667887 ~ 62668442 (-)
G1003495 NA non-coding upstream 60554 62988037 ~ 62988241 (-)
G1003496 NA non-coding upstream 60761 62988244 ~ 62988510 (-)
G1003498 NA non-coding upstream 65332 62992815 ~ 62993047 (-)
G1003509 NA non-coding upstream 94557 63022040 ~ 63022267 (-)
G1003575 NA non-coding upstream 139130 63066613 ~ 63066818 (-)
LOC110536201 LOC106580439 other downstream 231120 62663428 ~ 62689389 (-)
LOC110536162 NA other downstream 1279011 61636026 ~ 61657316 (-)
mrps36 LOC106580406 other downstream 1325032 61592425 ~ 61595436 (-)
LOC110535085 setbp1 other downstream 1589235 61269833 ~ 61331394 (-)
G1004487 NA other upstream 874046 63801529 ~ 63802002 (-)
G1005628 LOC106580457 other upstream 1433281 64360764 ~ 64363777 (-)
G1006106 NA other upstream 2171477 65098960 ~ 65099556 (-)
G1007506 NA other upstream 3445159 66372642 ~ 66372949 (-)
G1009720 NA other upstream 5043588 67971071 ~ 67971328 (-)

Expression

zgc:152830(LOC106580446) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 600.
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zgc:152830(LOC106580446) Expression in each Bioproject

Bar chart with 21 bars.
zgc:152830(LOC106580446) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20000.
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Co-expression Network