XLOC_028445 (cd9b)


Basic Information

Item Value
gene id XLOC_028445
gene name cd9b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4234994 ~ 4261673 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055209
GTTGGAATTTGTTTGTGTTCACACACTCGCTGTTTGAAAAGCTGGGAAAGGTACATTTCTCAGGTGCTCAGTTTTGGGTTTCTCCTCATAAAACTACACTTACTTTTTAAGCCATGGCCGCAGGAGGTGGACTTCAGTGTATCAAGTACTTGCTCTTTATCTTCAACTTCATCTTCTGGCTCGCCGGTACAGGAGTTTTGGCTGTTGGTCTGTGGCTGCGCTTCGATGCTAAAACTAAAGAATTCTTCACTgcggaaaatggccagactgtgTTCCTCACAGGGGTTTATATCCTGATCGTGGCCGGAGCCGTCATGATGGTGGTCGGGTTCCTGGGCTGCTGTGGAGCAATAAAAGAGTCGGCCTGCATGCTGGGACTGTTCTTCATGTTTCTGCTGGTCATTTTCGCCGCTGAAGTTGCCGCTGGAATCTGGGGTTTGTCTAATAAAGATAAGATTGTGTCCGATATCCAGCAGTTTTACACGCAGACCGTCAAAAATTACAAGGAGAGTCCAGACGGGCCGCTGAAGGAAACTCTGACTGCCATTCATTTTTCACTGCAGTGCTGTGGACCAACTGGCCTGGTCACCGATGGAGTATCTGTCACCTGCCCCAAACAGGAGGGTCTCGCAAACGTCATCACAACGGGCTGCTCATCTGTCATTCAGGATATGTTCAACTCTCGGCTTCATGTGATTGGAGGAGTCGGCATCGGCATTGGCGTGATCATGGTCTTCGGCATGATCTTCAGCATGTTGCTGTGCTGCGCTATCCGACGAACCCGTGACATCGTGTAAACCGCGGTTCGCCACAAGTGCCTGATTtctgcttttctttttatttatcttCGTTTGTGAATGTGCGCGAGTGGTTGTCCTGTTGTAAATGTCTAACAAAGAAAGTCCAGCATTAGTTGACCACTTGAAAACTGTTACAGTCTGTGCATATGAGGAGTCTGTTTTTAGTTTCTTTGTTTcgattaacatttattttgtctcTTTGAATGCACTAGCAAGCTTTCTGGCATTCTTttgtaacattttacatttattttatgtacccATATGGGAGTTTGGAGAGAAAGTAACATGTAGTAAACTACCAATAAAGTTGAAGACTAATCGA
>TCONS_00055210
TTGGCCTACTGCTCATTACAGGGGAGTTCGGGTGCTTCAAAAGACTCAGCCCTCACTGTCcaaaatttgtcccatacatgagctcatttgtcttattttgactgctatgatCTTATGAATTGATCGAAAGTGGCTGCTGCTTTGGACTTCAGTGACTCTGCTTTGCCCGATGCCAACAAATTTTAATGAGTttaacatccagctgtgcaaaaaAACACAGTCTGACCTCGCCGGTACAGGAGTTTTGGCTGTTGGTCTGTGGCTGCGCTTCGATGCTAAAACTAAAGAATTCTTCACTgcggaaaatggccagactgtgTTCCTCACAGGGGTTTATATCCTGATCGTGGCCGGAGCCGTCATGATGGTGGTCGGGTTCCTGGGCTGCTGTGGAGCAATAAAAGAGTCGGCCTGCATGCTGGGACTGTTCTTCATGTTTCTGCTGGTCATTTTCGCCGCTGAAGTTGCCGCTGGAATCTGGGGTTTGTCTAATAAAGATAAGATTGTGTCCGATATCCAGCAGTTTTACACGCAGACCGTCAAAAATTACAAGGAGAGTCCAGACGGGCCGCTGAAGGAAACTCTGACTGCCATTCATTTTTCACTGCAGTGCTGTGGACCAACTGGCCTGGTCACCGATGGAGTATCTGTCACCTGCCCCAAACAGGAGGGTCTCGCAAACGTCATCACAACGGGCTGCTCATCTGTCATTCAGGATATGTTCAACTCTCGGCTTCATGTGATTGGAGGAGTCGGCATCGGCATTGGCGTGATCATGGTCTTCGGCATGATCTTCAGCATGTTGCTGTGCTGCGCTATCCGACGAACCCGTGACATCGTGTAAACCGCGGTTCGCCACAAGTGCCTGATTtctgcttttctttttatttatcttCGTTTGTGAATGTGCGCGAGTGGTTGTCCTGTTGTAAAT
>TCONS_00055211
AGCAGCAGCATTAAGCCACAGCCCGAccagcacacagacacacagcagacCTTTGGGGATTCAAGCATCTGAAAACAACACGATTTCTGCTCTTTATTTGAGTCTGAACACGGATCTATCTACATGATGTCTAAATCAGCTCGCCGGTACAGGAGTTTTGGCTGTTGGTCTGTGGCTGCGCTTCGATGCTAAAACTAAAGAATTCTTCACTgcggaaaatggccagactgtgTTCCTCACAGGGGTTTATATCCTGATCGTGGCCGGAGCCGTCATGATGGTGGTCGGGTTCCTGGGCTGCTGTGGAGCAATAAAAGAGTCGGCCTGCATGCTGGGACTGTTCTTCATGTTTCTGCTGGTCATTTTCGCCGCTGAAGTTGCCGCTGGAATCTGGGGTTTGTCTAATAAAGATAAGATTGTGTCCGATATCCAGCAGTTTTACACGCAGACCGTCAAAAATTACAAGGAGAGTCCAGACGGGCCGCTGAAGGAAACTCTGACTGCCATTCATTTTTCACTGCAGTGCTGTGGACCAACTGGCCTGGTCACCGATGGAGTATCTGTCACCTGCCCCAAACAGGAGGGTCTCGCAAACGTCATCACAACGGGCTGCTCATCTGTCATTCAGGATATGTTCAACTCTCGGCTTCATGTGATTGGAGGAGTCGGCATCGGCATTGGCGTGATCATGGTCTTCGGCATGATCTTCAGCATGTTGCTGTGCTGCGCTATCCGACGAACCCGTGACATCGTGTAAACCGCGGTTCGCCACAAGTGCCTGATTtctgcttttctttttatttatcttCGTTTGTGA
>TCONS_00055212
CAGTCTTTTCTTCTCCTGAGGGCAGCAGCAGCATTAAGCCACAGCCCGAccagcacacagacacacagcagacCTTTGGGGATTCAAGCATCTGAAAACAACACGATTTCTGCTCTTTATTTGAGTCTGAACACGGATCTATCTACATGATGTCTAAATCAGGTCTGTCCAGTGGAGAGCAATGCATCAAATACATCATATTCTTCTTTAATTTCATGTTATGGCTCGCCGGTACAGGAGTTTTGGCTGTTGGTCTGTGGCTGCGCTTCGATGCTAAAACTAAAGAATTCTTCACTgcggaaaatggccagactgtgTTCCTCACAGGGGTTTATATCCTGATCGTGGCCGGAGCCGTCATGATGGTGGTCGGGTTCCTGGGCTGCTGTGGAGCAATAAAAGAGTCGGCCTGCATGCTGGGACTGTTCTTCATGTTTCTGCTGGTCATTTTCGCCGCTGAAGTTGCCGCTGGAATCTGGGGTTTGTCTAATAAAGATAAGATTGTGTCCGATATCCAGCAGTTTTACACGCAGACCGTCAAAAATTACAAGGAGAGTCCAGACGGGCCGCTGAAGGAAACTCTGACTGCCATTCATTTTTCACTGCAGTGCTGTGGACCAACTGGCCTGGTCACCGATGGAGTATCTGTCACCTGCCCCAAACAGGAGGGTCTCGCAAACGTCATCACAACGGGCTGCTCATCTGTCATTCAGGATATGTTCAACTCTCGGCTTCATGTGATTGGAGGAGTCGGCATCGGCATTGGCGTGATCATGGTCTTCGGCATGATCTTCAGCATGTTGCTGTGCTGCGCTATCCGACGAACCCGTGACATCGTGTAAACCGCGGTTCGCCACAA
>TCONS_00055213
ACCTGCTAAAATGCCTTGGCTCCTCCTCCTTCCTCTCTGACAAAGGCCAGCCATGGCCGCAGGAGGTGGACTTCAGTGTATCAAGTACTTGCTCTTTATCTTCAACTTCATCTTCTGGCTCGCCGGTACAGGAGTTTTGGCTGTTGGTCTGTGGCTGCGCTTCGATGCTAAAACTAAAGAATTCTTCACTgcggaaaatggccagactgtgTTCCTCACAGGGGTTTATATCCTGATCGTGGCCGGAGCCGTCATGATGGTGGTCGGGTTCCTGGGCTGCTGTGGAGCAATAAAAGAGTCGGCCTGCATGCTGGGACTGTTCTTCATGTTTCTGCTGGTCATTTTCGCCGCTGAAGTTGCCGCTGGAATCTGGGGTTTGTCTAATAAAGATAAGATTGTGTCCGATATCCAGCAGTTTTACACGCAGACCGTCAAAAATTACAAGGAGAGTCCAGACGGGCCGCTGAAGGAAACTCTGACTGCCATTCATTTTTCACTGCAGTGCTGTGGACCAACTGGCCTGGTCACCGATGGAGTATCTGTCACCTGCCCCAAACAGGAGGGTCTCGCAAACGTCATCACAACGGGCTGCTCATCTGTCATTCAGGATATGTTCAACTCTCGGCTTCATGTGATTGGAGGAGTCGGCATCGGCATTGGCGTGATCATGGTCTTCGGCATGATCTTCAGCATGTTGCTGTGCTGCGCTATCCGACGAACCCGTGACATCGTGTAAACC
>TCONS_00055214
CTCGCTGTTTGAAAAGCTGGGAAAGGTACATTTCTCAGGTGCTCAGTTTTGGGTTTCTCCTCATAAAACTACACTTACTTTTTAAGCCATGGCCGCAGGAGGTGGACTTCAGTGTATCAAGTACTTGCTCTTTATCTTCAACTTCATCTTCTGGCTCGCCGGTACAGGAGTTTTGGCTGTTGGTCTGTGGCTGCGCTTCGATGCTAAAACTAAAGAATTCTTCACTgcggaaaatggccagactgtgTTCCTCACAGGGGTTTATATCCTGATCGTGGCCGGAGCCGTCATGATGGTGGTCGGGTTCCTGGGCTGCTGTGGAGCAATAAAAGAGTCGGCCTGCATGCTGGGACTGTTCTTCATGTTTCTGCTGGTCATTTTCGCCGCTGAAGTTGCCGCTGGAATCTGGGGTTTGTCTAATAAAGATAAGATTGTGTCCGATATCCAGCAGTTTTACACGCAGACCGTCAAAAATTACAAGGAGAGTCCAGACGGGCCGCTGAAGGAAACTCTGACTGCCATTCATTTTTCACTGCAGTGCTGTGGACCAACTGGCCTGGTCACCGATGGAGTATCTGTCACCTGCCCCAAACAGGAGGGTCTCGCAAACGTCATCACAACGGTATCAGACATGCAACAAATCATCTTGCTGCTTCTGTCAATCTGCCGATGTGTTTTGGTGAACTCTTTTTGCTTGTGTTCCAGGGCTGCTCATCTGTCATTCAGGATATGTTCAACTCTCGGCTTCATGTGATTGGAGGAGTCGGCATCGGCATTGGCGTGATC
>TCONS_00055215
AACACTTGGGGAATGAAAAGCGCACGACTCTGAACATCACAATAGGCTCCATTCTTCACAACCAAACTGTCATCCTCACTGTATTCGCCTCTGCACAGAGCCGGTGGCACCACCATCTTTAGGAAAAATCAATCAAAGCAAAGAACTGCTATAATTAGACACAGAGGACAGAATCTGTAAACAGAACAGTGTGGAAGCAGCCATGCATGAGTAATGGTTGCATAAGCAGCAGCATTAAGCCACAGCCCGAccagcacacagacacacagcagacCTTTGGGGATTCAAGCATCTGAAAACAACACGATTTCTGCTCTTTATTTGAGTCTGAACACGGATCTATCTACATGATGTCTAAATCAGGTCTGTCCAGTGGAGAGCAATGCATCAAATACATCATATTCTTCTTTAATTTCATGTTATGGCTCGCCGGTACAGGAGTTTTGGCTGTTGGTCTGTGGCTGCGCTTCGATGCTAAAACTAAAGAATTCTTCACTgcggaaaatggccagactgtgTTCCTCACAGGGGTTTATATCCTGATCGTGGCCGGAGCCGTCATGATGGTGGTCGGGTTCCTGGGCTGCTGTGGAGCAATAAAAGAGTCGGCCTGCATGCTGGGACTGTTCTTCATGTTTCTGCTGGTCATTTTCGCCGCTGAAGTTGCCGCTGGAATCTGGGGTTTGTCTAATAAAGATAAGGTGAGAGATG

Function

symbol description
cd9b Acts upstream of or within posterior lateral line development. Predicted to be located in extracellular region and plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including EVL; epidermis; periderm; pronephric duct; and sensory system. Human ortholog(s) of this gene implicated in prostate adenocarcinoma. Orthologous to human CD9 (CD9 molecule).

GO:

id name namespace
GO:0048916 posterior lateral line development biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2768 Acts upstream of or within posterior lateral line development. Predicted to be located in extracellular region and plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including EVL; epidermis; periderm; pronephric duct; and sensory system. Human ortholog(s) of this gene implicated in prostate adenocarcinoma. Orthologous to human CD9 (CD9 molecule).

Ensembl:

ensembl_id ENSDARG00000016691

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055209 False 1125 mRNA 0.46 8 4234994 4256300
TCONS_00055210 False 934 mRNA 0.49 8 4235232 4250317
TCONS_00055211 False 817 mRNA 0.50 8 4235262 4259079
TCONS_00055212 False 859 mRNA 0.50 8 4235305 4259102
TCONS_00055213 False 739 mRNA 0.51 9 4235319 4256367
TCONS_00055214 False 786 lncRNA 0.49 6 4238000 4256275
TCONS_00055215 True 711 mRNA 0.47 5 4240262 4261673

Neighbor

gene id symbol gene type direction distance location
XLOC_028443 NA coding downstream 5839 4178834 ~ 4229155 (-)
XLOC_028444 NA coding downstream 24530 4207590 ~ 4210464 (-)
XLOC_028442 NA coding downstream 71118 4162825 ~ 4163876 (-)
XLOC_028441 NA coding downstream 77459 4147628 ~ 4157535 (-)
XLOC_028440 asb15b coding downstream 105807 4120570 ~ 4129187 (-)
XLOC_028446 CU468826.1 coding upstream 59495 4321168 ~ 4374704 (-)
XLOC_028447 CU468826.3 coding upstream 114825 4376498 ~ 4387012 (-)
XLOC_028448 ntf3 coding upstream 135830 4397503 ~ 4431975 (-)
XLOC_028449 tbc1d30 coding upstream 222978 4484651 ~ 4507761 (-)
XLOC_028450 FP102892.1 coding upstream 252765 4514438 ~ 4516508 (-)
XLOC_028438 NA non-coding downstream 282869 3949226 ~ 3952125 (-)
XLOC_028461 NA non-coding upstream 678794 4940467 ~ 4962892 (-)
XLOC_028462 NA non-coding upstream 701284 4962957 ~ 4967711 (-)
XLOC_028471 NA non-coding upstream 1160073 5421746 ~ 5459469 (-)

Expression


Co-expression Network