XLOC_028446 (CU468826.1)


Basic Information

Item Value
gene id XLOC_028446
gene name CU468826.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4321168 ~ 4374704 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055216
AGGTTTGGTAAAGGAGGCTCATTAATGAAAAGCACCATAAAGGAGGCTCATTAATGAAGAACACATTAAAAGGAGGCTCATTAATGAAGAGTGAAGCTTTGGAGACGACAGAATTACATCTAAAACAAGGCCCTCATTTATTAAAACATCTCTTAAGGAAATCTCGATGATGGCTAACTGACAAGCCCGGCTTTCTGGCTCAATCAAAGAttcatgcagtgttggtgggGTGAAGAAGGGCATCCGAAAAAGAAAGTTGACCAAAAattTGACGCACTGAGAAGCGATGTCGAAAGGAGCCATGAAAAAAAATATCACCAATTCCAGTTAt

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0006400 tRNA modification biological_process
GO:0001510 RNA methylation biological_process
GO:0030488 tRNA methylation biological_process
GO:0043414 macromolecule methylation biological_process
GO:0009451 RNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0008173 RNA methyltransferase activity molecular_function
GO:0008175 tRNA methyltransferase activity molecular_function
GO:0140098 catalytic activity, acting on RNA molecular_function
GO:0140101 catalytic activity, acting on a tRNA molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095042

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055216 True 331 lncRNA 0.40 3 4321168 4374704

Neighbor

gene id symbol gene type direction distance location
XLOC_028445 cd9b coding downstream 59495 4234994 ~ 4261673 (-)
XLOC_028443 NA coding downstream 92013 4178834 ~ 4229155 (-)
XLOC_028444 NA coding downstream 110704 4207590 ~ 4210464 (-)
XLOC_028442 NA coding downstream 157292 4162825 ~ 4163876 (-)
XLOC_028441 NA coding downstream 163633 4147628 ~ 4157535 (-)
XLOC_028447 CU468826.3 coding upstream 1794 4376498 ~ 4387012 (-)
XLOC_028448 ntf3 coding upstream 22799 4397503 ~ 4431975 (-)
XLOC_028449 tbc1d30 coding upstream 109947 4484651 ~ 4507761 (-)
XLOC_028450 FP102892.1 coding upstream 139734 4514438 ~ 4516508 (-)
XLOC_028451 zgc:194209 coding upstream 151544 4526248 ~ 4535189 (-)
XLOC_028438 NA non-coding downstream 369043 3949226 ~ 3952125 (-)
XLOC_028461 NA non-coding upstream 565763 4940467 ~ 4962892 (-)
XLOC_028462 NA non-coding upstream 588253 4962957 ~ 4967711 (-)
XLOC_028471 NA non-coding upstream 1047042 5421746 ~ 5459469 (-)
XLOC_028472 NA non-coding upstream 1053614 5428318 ~ 5441954 (-)

Expression


Co-expression Network