LOC110536235 (LOC106580467)


Basic Information

Item Value
gene id LOC110536235
gene name LOC106580467
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 64636219 ~ 64642155 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621885.2
GGATGGGGAAAACGCGAGTAGGACATTTCGGCGCGCGAAATCTACAGCAGGAAGAGAGAAACGGCGAGTTTTTGGTTTTGAATCAATCAAACTAAATTCCATAATCTACAAACATCTACATTAATATGGCAGATCCGAAGGTGCGGGAAACACCAGAAGAGCAGGAGACTTCAACAGACAATGCAGAAGAATCAAACCACGATCCCCATTATGAGCCCATCGTGTCTCTTCCAGAGCAGGATGTGAAGACActagaggaggacgaggaggaactATTCAAAATGCGGGCGAAGCTCTACCGCTTTGCCTCTGAGAACGAACCACCAGAGTGGAAGGAGCGCGGCACAGGCGACGTCAAGCTCCTGAAACACAAAGAGAAGGGCACCATCCGCCTATTGATGAGGCGAGACCGGACCTTAAAGATCTGTGCCAATCACAACATTTTCCCTGTGATGGAGCTGAAGCCCAACGCCGGCAGCGACAGGGCATGGGTATGGAACACACTTGCCGACTTCGCTGATGAGCATCCCAAACCTGAACTCCTGGCAATCCGTTTCCTCAATGCAGAAAATGCTCAGAAATTTAAGGTGAAGTTCGATGAATGCAAGGAGGAAGTCCGAAAATCTCAAGACGGATCAGgagaaaacactgacagtgcAAACAAAGTGGCAGAGAAACTGGAGGAACTATCTGTAAAAGACAAGACCAagacagaggaaaagagggaggaggaaaaggagaaagCGGCAGCAGAAGAGAAGAAATGAAACCAAGAACTTGCTTTACTGATCTTCAACTTGTCATTTTCTACAATAGACTCTAAAGAAACTGAATTTGGACACTTGCATATTgatttatttagttttttttaatgatttgtttacctcGAGATCACAAGACCTTGGTGCCGCAAAAAAATGATCCATTCATTAAAATGTGCCCCTCCCCAACTGCCCTCTGCTTTTTCCATCATGGAAAACCAAGTTGTCTGTTCTGCTCATCTGTCACTCATTTCAGACAGAAGATGTGGTGTATTACCTGTTTTGGTAAATTAGCCCATTTTATTTACCGCTTTCAaattgagagggggggggggggggtgtgtgttaaACCATGGGGGCTGTTTGCATGACAAATTAGGGAGGTATTAAACAATGACCGTGTTTAATGAATTTACCTGCAAAAAAAACAGCACCACGGGTTGGATCCGATTATGCTTTGCTGGAGGACACTGGTCTATGGCACGTAACGTAAATGGGCAAAAGCGGTGAGGGAGGAGCGCCCTTCTCAAATATAACAGTAATCTGTGTTGTTtagtcatgttgtcaacaaggcagcatggtccATAAACATATTTTCCATAAATTGTTTGTTTTGAAATTAGATTTCATTGGGAAGGAAGATAAGTAATCACTTTAGCATGTGaacacagaatcctactcattatACCACGTGATTAATTacatcacttttgttttgagccggcTTTCACTTGGTGCGAAACACGCCTACTCCCTCATTCACACAGACCCGATACCTGTATTTTGGTTACAGTAGGGTTTCCAAaactcgggaccccaaggggtgcacgttttttGCACTagcgctacacagctgattcaaatcaactaatcatcaagctttgaatcagctgtttcgtgttagggcaaaaaacaaaatgtataccCTTTGGGTCttgaggacagagtttgggaaatgctgggTTACAGGGACTGTGAAAATTCTGTAATCATGACTaggtctttaggtggcttttacTTTGCCTTGTTTTTATACCCTACCCCTTAAAGATTTACCAAAAAGCAGGTGAAAATAAGCAGTCGTGGTACGTTTGTGGGATCTTTGTATATGAAAGAGGTATTGGTGTCAATTTACCATACTGTGAAATGAGGCTTGTGATATTGGTAATTCCCACATTGGGTAAGTCTTTTGTTATTCTGAAGCAAAGTTAGTTCATATGGAACAGGACTGCTTGTTAGCGCCACAAGTATGGAAAACGGACGGAAAGGACGTGTGAGGAGCAGTAATGTCTTTGGCACAAACTCAATATGGAGGCTTCCTCTGTATCCTCTCCTTAGTCTTTACTGATCTTAATACAGGCAAGGTGGTGGCTGCTTACCAAGCAGGAATTTGCCTTCACCTGTCCACTTAGTTCAGGGATTGGCAACTCCAGCCCTTGGGAGCCGAATTGGTGTCACCCTTTtgcccagctaacacacctgactcaatcaactaatcatgatcttctgtttagaatgcaattcatttaatcagctgtgtttgctacgGATAGGGGGGGTACAACTCcggcccctgaggactggagttgcccatcccagGTTCAGGTGAAGGAGAGGAAATTAGTGGAGGAAGACACTTTGGACCATTGAGATGCAGCCGTAGCTTGGTAAAATCAGGTGTACTCTGGGAACTAGTCTGCTGCTCGCTCAGAGGTCCTACTGCATATTCTCATTTGCATAATTCAGCTTCATTTTGTTGTTGACTGATCACACCAAATCAAAATGAAAGACAACGGGTTATCAGAATTAAGCGGAGGCTCGTCAATCTATGTTCTGGCTCAGGTCTCCTTCCCGGTGGCTCAAGTTTGTTTTTAGGCCATAATACATTCCCTCAAAGTGAAACAAGCATGTAGACAAGGTATATTGGAAGAGTGTATTGATGCGGTATTAGGTGTGCTCACCGTCCTAACCTGTCCCCACTAACTGCATTGACCCTGCATCGAAGTGCCAGTGCATCTGTAAATACATGTACATGGATGGAATGTTGCTTTTCATTTCCACTCAAATGGTTTCCTCCACCTTCCAATAAAAGCTCTCAAAGACCA
>XM_021621886.2
AAATTGGAGGGGTGCCGGGATGGGGAAAACGCGAGTAGGACATTTCGGCGCGCGAAATCTACAGCAGGAAGAGAGAAACGGCGAGTTTTTGGTTTTGAATCAATCAAACTAAATTCCATAATCTACAAACATCTACATTAATATGGCAGATCCGAAGGAAACACCAGAAGAGCAGGAGACTTCAACAGACAATGCAGAAGAATCAAACCACGATCCCCATTATGAGCCCATCGTGTCTCTTCCAGAGCAGGATGTGAAGACActagaggaggacgaggaggaactATTCAAAATGCGGGCGAAGCTCTACCGCTTTGCCTCTGAGAACGAACCACCAGAGTGGAAGGAGCGCGGCACAGGCGACGTCAAGCTCCTGAAACACAAAGAGAAGGGCACCATCCGCCTATTGATGAGGCGAGACCGGACCTTAAAGATCTGTGCCAATCACAACATTTTCCCTGTGATGGAGCTGAAGCCCAACGCCGGCAGCGACAGGGCATGGGTATGGAACACACTTGCCGACTTCGCTGATGAGCATCCCAAACCTGAACTCCTGGCAATCCGTTTCCTCAATGCAGAAAATGCTCAGAAATTTAAGGTGAAGTTCGATGAATGCAAGGAGGAAGTCCGAAAATCTCAAGACGGATCAGgagaaaacactgacagtgcAAACAAAGTGGCAGAGAAACTGGAGGAACTATCTGTAAAAGACAAGACCAagacagaggaaaagagggaggaggaaaaggagaaagCGGCAGCAGAAGAGAAGAAATGAAACCAAGAACTTGCTTTACTGATCTTCAACTTGTCATTTTCTACAATAGACTCTAAAGAAACTGAATTTGGACACTTGCATATTgatttatttagttttttttaatgatttgtttacctcGAGATCACAAGACCTTGGTGCCGCAAAAAAATGATCCATTCATTAAAATGTGCCCCTCCCCAACTGCCCTCTGCTTTTTCCATCATGGAAAACCAAGTTGTCTGTTCTGCTCATCTGTCACTCATTTCAGACAGAAGATGTGGTGTATTACCTGTTTTGGTAAATTAGCCCATTTTATTTACCGCTTTCAaattgagagggggggggggggggtgtgtgttaaACCATGGGGGCTGTTTGCATGACAAATTAGGGAGGTATTAAACAATGACCGTGTTTAATGAATTTACCTGCAAAAAAAACAGCACCACGGGTTGGATCCGATTATGCTTTGCTGGAGGACACTGGTCTATGGCACGTAACGTAAATGGGCAAAAGCGGTGAGGGAGGAGCGCCCTTCTCAAATATAACAGTAATCTGTGTTGTTtagtcatgttgtcaacaaggcagcatggtccATAAACATATTTTCCATAAATTGTTTGTTTTGAAATTAGATTTCATTGGGAAGGAAGATAAGTAATCACTTTAGCATGTGaacacagaatcctactcattatACCACGTGATTAATTacatcacttttgttttgagccggcTTTCACTTGGTGCGAAACACGCCTACTCCCTCATTCACACAGACCCGATACCTGTATTTTGGTTACAGTAGGGTTTCCAAaactcgggaccccaaggggtgcacgttttttGCACTagcgctacacagctgattcaaatcaactaatcatcaagctttgaatcagctgtttcgtgttagggcaaaaaacaaaatgtataccCTTTGGGTCttgaggacagagtttgggaaatgctgggTTACAGGGACTGTGAAAATTCTGTAATCATGACTaggtctttaggtggcttttacTTTGCCTTGTTTTTATACCCTACCCCTTAAAGATTTACCAAAAAGCAGGTGAAAATAAGCAGTCGTGGTACGTTTGTGGGATCTTTGTATATGAAAGAGGTATTGGTGTCAATTTACCATACTGTGAAATGAGGCTTGTGATATTGGTAATTCCCACATTGGGTAAGTCTTTTGTTATTCTGAAGCAAAGTTAGTTCATATGGAACAGGACTGCTTGTTAGCGCCACAAGTATGGAAAACGGACGGAAAGGACGTGTGAGGAGCAGTAATGTCTTTGGCACAAACTCAATATGGAGGCTTCCTCTGTATCCTCTCCTTAGTCTTTACTGATCTTAATACAGGCAAGGTGGTGGCTGCTTACCAAGCAGGAATTTGCCTTCACCTGTCCACTTAGTTCAGGGATTGGCAACTCCAGCCCTTGGGAGCCGAATTGGTGTCACCCTTTtgcccagctaacacacctgactcaatcaactaatcatgatcttctgtttagaatgcaattcatttaatcagctgtgtttgctacgGATAGGGGGGGTACAACTCcggcccctgaggactggagttgcccatcccagGTTCAGGTGAAGGAGAGGAAATTAGTGGAGGAAGACACTTTGGACCATTGAGATGCAGCCGTAGCTTGGTAAAATCAGGTGTACTCTGGGAACTAGTCTGCTGCTCGCTCAGAGGTCCTACTGCATATTCTCATTTGCATAATTCAGCTTCATTTTGTTGTTGACTGATCACACCAAATCAAAATGAAAGACAACGGGTTATCAGAATTAAGCGGAGGCTCGTCAATCTATGTTCTGGCTCAGGTCTCCTTCCCGGTGGCTCAAGTTTGTTTTTAGGCCATAATACATTCCCTCAAAGTGAAACAAGCATGTAGACAAGGTATATTGGAAGAGTGTATTGATGCGGTATTAGGTGTGCTCACCGTCCTAACCTGTCCCCACTAACTGCATTGACCCTGCATCGAAGTGCCAGTGCATCTGTAAATACATGTACATGGATGGAATGTTGCTTTTCATTTCCACTCAAATGGTTTCCTCCACCTTCCAATAAAAGCTCTCAAAGACCA

Function

NR:

description
ran-specific GTPase-activating protein-like isoform X2

GO:

id name namespace
GO:0046907 intracellular transport biological_process

KEGG:

id description
K15306 RANBP1; Ran-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621885.2 False 2866 mRNA 0.44 6 64636219 64642138
XM_021621886.2 True 2877 mRNA 0.44 6 64636219 64642155

Neighbor

gene id symbol gene type direction distance location
LOC110536230 LOC106580464 coding downstream 119891 64509358 ~ 64516328 (-)
LOC110536227 LOC106580460 coding downstream 163276 64448162 ~ 64472943 (-)
LOC110536222 LOC106580456 coding downstream 877799 63628512 ~ 63758420 (-)
atad1a LOC106580455 coding downstream 1077211 63552161 ~ 63559008 (-)
LOC110535092 NA coding downstream 1228055 63374900 ~ 63408164 (-)
dgcr8 LOC106580468 coding upstream 16843 64658998 ~ 64668914 (-)
LOC110536236 LOC106580470 coding upstream 29854 64672009 ~ 64703007 (-)
LOC100653466 LOC106580488 coding upstream 462460 65104615 ~ 65113617 (-)
LOC110536248 LOC106580495 coding upstream 1297951 65940106 ~ 66043855 (-)
LOC110536255 LOC106580502 coding upstream 1594393 66236548 ~ 66248437 (-)
G1005800 zdhhc8 non-coding downstream 18744 64615414 ~ 64617475 (-)
G1005665 NA non-coding downstream 156267 64403448 ~ 64479952 (-)
G1005628 LOC106580457 non-coding downstream 275196 64360764 ~ 64363777 (-)
G1005626 NA non-coding downstream 277774 64358051 ~ 64358445 (-)
G1005406 NA non-coding downstream 578461 64055463 ~ 64057758 (-)
G1005824 LOC106580466 non-coding upstream 3758 64645913 ~ 64648075 (-)
G1006094 NA non-coding upstream 444529 65086684 ~ 65086883 (-)
G1006098 NA non-coding upstream 449040 65091195 ~ 65091537 (-)
G1006104 NA non-coding upstream 455320 65097475 ~ 65097992 (-)
G1006327 NA non-coding upstream 631147 65273302 ~ 65274706 (-)
G1004487 NA other downstream 834217 63801529 ~ 63802002 (-)
LOC110536206 LOC106580443 other downstream 1889971 62740236 ~ 62804200 (-)
LOC110536201 LOC106580439 other downstream 1946897 62663428 ~ 62689389 (-)
LOC110536162 NA other downstream 2994788 61636026 ~ 61657316 (-)
G1006106 NA other upstream 456805 65098960 ~ 65099556 (-)
G1007506 NA other upstream 1730487 66372642 ~ 66372949 (-)
G1009720 NA other upstream 3328916 67971071 ~ 67971328 (-)
G1010443 NA other upstream 4045102 68687257 ~ 68687962 (-)
G1010922 NA other upstream 4474352 69116507 ~ 69119486 (-)

Expression


Co-expression Network