dgcr8 (LOC106580468)


Basic Information

Item Value
gene id dgcr8
gene name LOC106580468
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 64658998 ~ 64668914 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621882.2
AAAAGCCGGTGTTGGGGGTGGAACTTCCGAAGCAGTCTGCAGCAGTTTGCAGCATTCGGCAAGATGGCGGAACGGGGTCTGTCTGGCTTCGTCAGAAGAATAACATAATTTATATTAGCTAGCAAAGAAAATAAAATGGAGGAAATAAAATATAGCTCTGACAGAGGATTCGCCAGTGGAGGATGAATAGTGCCTAGATCTGAGCAATATAAGCTGAATGCATTGTGATTTCCAATAATTGAGACAGTGATTCTAAAAAACTGTCTACATTAATGAAAAGAACAATGTAGTCATCTTAGCATATTCAACACTGGTACATGGTCAATACAGGGATTTTTTTATTCTTCTAAATATTGTGTGCAATGTGCTTCTGCATGCCTTTTAGCTGAAAGCTTATGAGAAATAATTGCCAAAACAGTCAGGGTGACCCATAGAGCAGTTGTATTTAGTAATTCATAAGAAACAgtcaacatggagatggatgacATAATACCCCCCTTACCGTTGGAGCCACCTGATGATTTGAACTCGGAGGGCCTTAATGGTAAAGCGCAGCCTCCAACACCCCCCCTGCAAACGTCCAGTGACGCAGAGGAAATGGACGTTAGCTCTGGtggtgatggacacacacacaccccagcagGGGGCCAGGGCCTCCAAACCAAGGGCTCCATAACCTTCATTAATAACCTGTCAGATGAGGCCGAACCCAGCACCTCGTGCCCTAGAACAGCCCGCCACGCACCCCCTGTCACCAAGTTTCTGCCAGACCTCAAATTACTCAGAGACATTAAGATCAGTGTCAGTGTCGTAGATACCAGTAGGAGCAAAGATAGGAAGGTGCTGTACACAGGGATAGGTCAGGAGGGTGGTGGTGAAGGGGAGACCAGCTCAGAGAGCCTTAATGGTgagttttatgatgctgatacaGAGCCAGGGGCTGTGGATGGTAGCTCAGGGCTTGGGGTGGTCGGTGTcagtgcagggaggagaggggaggaggcagAGGCAGACCTGGAGAACAAAGTGGAGTTTGCGGTCCTAGATGAGCTGGAGGACTTCAGTCAGGACTTCCTGGACACGGAGGATGTGCAGCAGGGGGGGTTCAGGTCAGAGGTCATAGTTCAACAGGATCATGCTGACGAAGAGAACCTGAATATCGCATATGAGGAGGACTTTGACAATGATGTAGACGCTCTGCTGGAGGAGGGCATGCCCGTGCCCAAAAAGATGCGCCTGGCAGAGGGGGCTGTTGAGTATGCAGGAGACAGTGATCACGCATCCGACagggatgtggagggaggtgtTCAGCCCATGATGACCAAAAttaagacagtcttgaagaGTCGTGGGCGTCCACCCACTGAGCCACTACCTGACGGATGGATCATGACATTCCATAACTCTGGCATTCCAGTCTACCTGCACAGAGAGACCAGAGTGGTGACCTGGTCCAGACCTTACTTTCTGGGGTCCGGGAGCATCAGGAAACACGACCCTCCCACCAGTAGCATCCCTTGCCTGCACTATAGGAAGATGAAGGATCGCGAGGAGAGGGAACAGAACGGAGAGGTGACGCCCAACGCTGAAGTGTCTCcggtgaagcctggggaggaggcaGACTCCGTGGAGAGACCAGACGAGCCTGACTCCACTGCCCAGGAGGACCCTACCACTGTGGGCCTGGGGGAGGGACAGGTGGAGATAGGGACAGGCCTGGTCACAGAGGGGACCATAAAGGGGTGCCCTGTCCTGCATGGCAAGATGCCCCACTCCTGTGAGATGGCCCAGGGGGCTCTGGGACAGGTCAGGGCCAAGGTGGAGGTGTGCAAAGATGAATCGATAGAAATTGAGGAGTTCCGCAGCTACCTGGAGAAGTGCTTTGACTTTGAACAAGTGACTGTGAAGAAGTTCCGTACCTGGGCAGAGCGCAGGCAGTTCAACAGGGACATCAAGAGGAAACAGGCTGAGTCAGAGAGACCCATTCTGCCTGCCAACCAGAAACTCATCACTCTGTCTGTATCAGATACCCCCACCAAGAAAGAGTTTGTCATTAACCCAAATGGGAAATCTGAAGTTTGCATCCTACATGAATATATGCAACGTGTCTTAAAGGTCCGACCTGTTTACAACTTTTTTGAATGTGAGAACCCAAGTGAACCCTTTGGAGCCTCCGTCATAATAGAGGGAGTGACATATGGCACAGGAACTGCAAGCAGTAAAAAACTTGCCAAGAATAAAGCTGCTCGAGCCACACTGGAGATTCTCATCCCTGACTTTGTGAAGCAGACGTCTGAGGAGAAGCTTGTAGAAGGGGATGAACTGGAGTATTTTAATCATATCAGTATTGAAGATTCAAGGGTGTACGAACTGACCAATAAAGCAGGATTACTCTCGCCATATCAGATTCTACACGAGTGCCTTAAGAGAAACCATGGAATGGGTGACACCAGCATCAAGTTTGAGGTGATCCCAGGAAAGAACCAGAAGAGTGAATATGTGATGACGTGTGGAAAGCATACCGTGCGCGGATGGTGCAAGAATAAACGTGTTGGGAAGCAGCTGGCGTCTCAGAAGATCCTACAGATGCTGCACCCTCACGTGAAGAACTGGGGGTCACTGCTCCGCATGTACGGCAGAGAGAGCAATAAGATGGTAAAAAAGGAAAATTCAGACAAGAGTGTGATTGAACTTCAGCAGTATGCCAAAAAGAACAGGCCAAATCTTCACATCCTGAACAAACTGCAAGAGGAGATGAGGAAACTGGCTAAGGAGAGGGAGGAAACCAGGAAGAAGCCCAAGATGACCATAATGGAGTCAGCCCAGCCTGGTAGTCAGCCCCTCTGCACTGTTGACGTCTAGGAACCATCACTGCAACCAATCTAACATGGCACTGACCAATGGTAGCCATAGTCACTGTCCGATTTTAAAAGCCACTCCACCATCCAATTATGCATCATTGTAAAATGGCAATACAACTGGACATTTCTAGTATAGCGGTGGTCATCTTCTTAGCACTGTCTCCAAGCTGTTTATTATTTACTCCAAAGGTATTTTTGATTAATTGTTAGTGGGTAGGAATAGGACAAATGCACTAACAGACAGTAGAGTTAACACCATCTACCTCTAGATGCAATCTCTACACAGTGGCACTTCTATAAATTGAACCATAGGGGTTGCAGACAGATCGGTTGAGATGACTTGACATGTATCTAAGATCCACAAGAAATTGTCAGCCTGTTTACTGTGCGTAGTAATAACTGCTGACAACCACTAGACCCCTCACCCCTTCATTTATATTGCATTGATAATACGCTCCAAATATAACCTAAAGTACCTGATACTTTACAGACTGAACATTCCTAACAGGTTTCCTTGTATACTTAAAGCATTGCCTATTCTCACGGATTAGTTTGCTCTCTCTGCTTTTGCTATACAGGTACGCTGTGGGAAACTGATTTATATGCTGTTGTCATTGGAAATTGATGTCGTGTATAATTTGGATGGCCAACTTCATTTGCTTGTGAACCTGTTAAGAAAAAAGTGATATATT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K18419 DCGR8; microprocessor complex subunit DGCR8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621882.2 True 3553 mRNA 0.48 14 64658998 64668914

Neighbor

gene id symbol gene type direction distance location
LOC110536235 LOC106580467 coding downstream 16843 64636219 ~ 64642155 (-)
LOC110536230 LOC106580464 coding downstream 142670 64509358 ~ 64516328 (-)
LOC110536227 LOC106580460 coding downstream 186055 64448162 ~ 64472943 (-)
LOC110536222 LOC106580456 coding downstream 900578 63628512 ~ 63758420 (-)
atad1a LOC106580455 coding downstream 1099990 63552161 ~ 63559008 (-)
LOC110536236 LOC106580470 coding upstream 3095 64672009 ~ 64703007 (-)
LOC100653466 LOC106580488 coding upstream 435701 65104615 ~ 65113617 (-)
LOC110536248 LOC106580495 coding upstream 1271192 65940106 ~ 66043855 (-)
LOC110536255 LOC106580502 coding upstream 1567634 66236548 ~ 66248437 (-)
erlin2 erln2 coding upstream 1583430 66252344 ~ 66279789 (-)
G1005824 LOC106580466 non-coding downstream 10923 64645913 ~ 64648075 (-)
G1005800 zdhhc8 non-coding downstream 41523 64615414 ~ 64617475 (-)
G1005665 NA non-coding downstream 179046 64403448 ~ 64479952 (-)
G1005628 LOC106580457 non-coding downstream 297975 64360764 ~ 64363777 (-)
G1005626 NA non-coding downstream 300553 64358051 ~ 64358445 (-)
G1006094 NA non-coding upstream 417770 65086684 ~ 65086883 (-)
G1006098 NA non-coding upstream 422281 65091195 ~ 65091537 (-)
G1006104 NA non-coding upstream 428561 65097475 ~ 65097992 (-)
G1006327 NA non-coding upstream 604388 65273302 ~ 65274706 (-)
G1006448 NA non-coding upstream 733110 65402024 ~ 65402481 (-)
G1004487 NA other downstream 856996 63801529 ~ 63802002 (-)
LOC110536206 LOC106580443 other downstream 1912750 62740236 ~ 62804200 (-)
LOC110536201 LOC106580439 other downstream 1969676 62663428 ~ 62689389 (-)
LOC110536162 NA other downstream 3017567 61636026 ~ 61657316 (-)
G1006106 NA other upstream 430046 65098960 ~ 65099556 (-)
G1007506 NA other upstream 1703728 66372642 ~ 66372949 (-)
G1009720 NA other upstream 3302157 67971071 ~ 67971328 (-)
G1010443 NA other upstream 4018343 68687257 ~ 68687962 (-)
G1010922 NA other upstream 4447593 69116507 ~ 69119486 (-)

Expression


Co-expression Network