LOC100653466 (LOC106580488)


Basic Information

Item Value
gene id LOC100653466
gene name LOC106580488
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 65104615 ~ 65113617 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001246344.1
GTGCAAAGCATATAGTAAAATCCAGCTTTTGGAATGATTTCAGCAATATCCAGTCCGTGGCTGACGCAGCTGTCCCATTTTTGCGATGTTGCAGCCTTCACGACCAGCAGCCTAAGCAGCCTCAACGCACCGGGGAGTTAccatctctctccgtcccccGGGGACCCCTACAGCCAACATGACACCCACTTTGAGCCATGCCCGGCCGCTCAACACAGCTACAACTACTCGGGGTCGAACCCCGCACAGGCCCAGCAGAGCGACACCGGGTCTTCCAACTGTTCCTCGTCGTCCCCCAGTTCCACACCAAACAGCAAGTCTCTGGTGAAAAAGAACCCTAAGGTGGCCAACATTAACGTTCAGTTGGAGATGAAAGCTTTATGGGATGAATTTAATCATCTGGGAACGGAGATGATCGTTACTAAGGCTGGAAGGCGAATGTTTCCAACATTTCAAGTGAAAATATTTGGAATGGATCCTATGGCAGACTACATGCTGCTAATGGATTTCCTACCAGTCGACGACAAACGATACAGGTATGCTTTTCACAGCTCCTCCTGGCTGGTGGCGGGTAAAGCTGACCCTGCTACTCCCGGGAGAGTTCACTACCACCCGGACTCTCCCGCCAAGGGCGCACAGTGGATGAAGCAGATAGTCTCATTCGATAAACTAAAACTGACTAACAATTTACTGGATGACAATGGACATATCATTCTGAACTCAATGCACAGATACCAGCCGAGATTCCACGTCGTCTACGTGGACCCACGCAAAGACAGTGAGAAGTATGCCGAGGAGAATTATAAGACCTTTGTTTTTGAGGAAACACGGTTCACCGCGGTCACAGCGTATCAGAACCACAGGATAACGCAGCTAAAAATCGCCAGTAATCCTTTCGCAAAAGGCTTCAGGGACTGTGATCCAGAGGACTGGCCCAGGAATCACAGGCCAGGCTCTCTGCCAATTATGAGTGCCTTTGCCAGAACAAGGAATCCAATGTCTTCTCCCCCACTTCAGAACGGCTCAGAGAAAGAGGACAATAGGCGGGACTACGACCGGGACCCCAATGGCACGCCGATACACGCTGACCCCGCCCACCAGCTGATGTCACGTGTCCTCAGCCCTGCCCTCCCCGTCCAAGGAGGCCTCCACGCCGTCCCCCTCACCAGTggccggccaagccctccccacGACCTGCGCATCCCGGACGGCCACCCACTGGCCCAAGACACCCTGCACCACCACCCCTACAAGTACCCCACATCCTACGAACACTACCTGGGGGCTAAGACCCGGCCGTCACCCTACCCCTTACCCGGCATCAGAGGACACacgtaccaccaccacatgaaCCCAGCCACAGCTAACATGTACTCCACAACTAGTGCCCCCGCTAACTATGACTACGGTCCCAGATAATGACTGTATAGCTGTAGCCGGCAGCCACGGCCCACACACCTGGGCTTCGGCTACTAGTGCTGTGGAAAAGGAGACACGCAGGAGTGGAGGGACAACAACACAACTCTGTCTTCATGGCTGATGCAACGTCAAGGAGGTTAGAAGGTTGGGAGGTTGTGCGGCACACCCGGTTGCTGGATACCCCATTCTCTCAGAGAGACAAAAACTACCGTATTTATTTAAGGGAAACGTATCTTGGCAGGAAGTACAGACTGGCCCTCTGAGACCGAGCAGGGGTCTGTCTTGACCTCTGAACTTTGACAGCAATAGCTCTACATGAGGGCACCTTTTTGCCTGCGTGGTAGAGCGGCGCAGACAGTGAGCCGATGAAACAGCTTACCAGGGCCTTCTCTTAAAACATGGATGATACATTATATTCGGACTGGAATTGATTCTTTTTTTTGTGTTGGATGCACTTTTTGTCATTTTTGCTTTCAGAAAAGCCATATGTTATATAGTCAATCAAGCTTCCATAGATAGACCAGACATTTGCATGTTGAGCTCATTGGATAGGTGTTGAAACACCTAATTGttttttagaagaaaaaaatatttttgaaccATCTTGAGATGCCGCCCTGAGAAGATTGTACCATGGCACTGACTTGAAACAATTCAAAGTCAATAAAGAAGCGGAATGActgttctgtaactgtaaaataaatatgaaattCTTTACTTTT

Function

NR:

description
T-box transcription factor TBX1-like isoform X1

GO: NA

KEGG:

id description
K10175 TBX1; T-box protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001246344.1 True 2141 mRNA 0.51 7 65104615 65113617

Neighbor

gene id symbol gene type direction distance location
LOC110536236 LOC106580470 coding downstream 401608 64672009 ~ 64703007 (-)
dgcr8 LOC106580468 coding downstream 435701 64658998 ~ 64668914 (-)
LOC110536235 LOC106580467 coding downstream 462460 64636219 ~ 64642155 (-)
LOC110536230 LOC106580464 coding downstream 588287 64509358 ~ 64516328 (-)
LOC110536227 LOC106580460 coding downstream 631672 64448162 ~ 64472943 (-)
LOC110536248 LOC106580495 coding upstream 826489 65940106 ~ 66043855 (-)
LOC110536255 LOC106580502 coding upstream 1122931 66236548 ~ 66248437 (-)
erlin2 erln2 coding upstream 1138727 66252344 ~ 66279789 (-)
LOC110536257 LOC106580503 coding upstream 1183085 66296702 ~ 66300270 (-)
LOC110536259 LOC106580505 coding upstream 1386805 66500422 ~ 66510614 (-)
G1006104 NA non-coding downstream 6623 65097475 ~ 65097992 (-)
G1006098 NA non-coding downstream 13078 65091195 ~ 65091537 (-)
G1006094 NA non-coding downstream 17732 65086684 ~ 65086883 (-)
G1005824 LOC106580466 non-coding downstream 456540 64645913 ~ 64648075 (-)
G1005800 zdhhc8 non-coding downstream 487140 64615414 ~ 64617475 (-)
G1006327 NA non-coding upstream 159685 65273302 ~ 65274706 (-)
G1006448 NA non-coding upstream 288407 65402024 ~ 65402481 (-)
G1006464 NA non-coding upstream 314988 65428605 ~ 65429036 (-)
G1006465 NA non-coding upstream 315624 65429241 ~ 65429501 (-)
G1006707 NA non-coding upstream 329076 65442693 ~ 65443286 (-)
G1006106 NA other downstream 5059 65098960 ~ 65099556 (-)
G1005628 LOC106580457 other downstream 740838 64360764 ~ 64363777 (-)
G1004487 NA other downstream 1302613 63801529 ~ 63802002 (-)
LOC110536206 LOC106580443 other downstream 2358367 62740236 ~ 62804200 (-)
LOC110536201 LOC106580439 other downstream 2415293 62663428 ~ 62689389 (-)
G1007506 NA other upstream 1259025 66372642 ~ 66372949 (-)
G1009720 NA other upstream 2857454 67971071 ~ 67971328 (-)
G1010443 NA other upstream 3573640 68687257 ~ 68687962 (-)
G1010922 NA other upstream 4002890 69116507 ~ 69119486 (-)
G1011014 NA other upstream 4191719 69305336 ~ 69306428 (-)

Expression

LOC100653466(LOC106580488) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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LOC100653466(LOC106580488) Expression in each Bioproject

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LOC100653466(LOC106580488) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network