LOC110536248 (LOC106580495)


Basic Information

Item Value
gene id LOC110536248
gene name LOC106580495
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 65940106 ~ 66043855 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621928.2
ATGATAGCCTCTCATCTTCTGGCATACTACTTCACGGAGCTCCACCATGACAAGGTTCAACAAGTGGATAAATTATTGTACCACCTGCGGTTATCGGACGAGAACCTGATTGACGTGTCTGAGAGGTTCCGGAGGGAGATGGATAAGGGGCTGGGCCGTGACTCCAACCCTACGGCTGCTGTGAAGATGCTGCCCACGTTTGTGCGCTCCACCCCTGACGGGACAGAAAAGGGAGACTTCCTGGCTCTCGACCTGGGTGGGACCAACTTCCGGGTCCTGCTGGTGAAGGTGTCTGACAACGGGAAGCAGAAGGTGGAGATGGAGAACCAGATCTATGCCATTCCTGAGGAGCTGATGAGGGGCAGCGGCgaagagCTCTTCGACCATATTGCTGAGTGTCTTGCTAActtcatggagaagctggggatcaAGAACCAGAAGCTTCCTCTGGGCTTCACCTTCTCCTTCCCCTGCCAGCAGACCAAACTGGATGAGAGTATTCTGGTGTCATGGACCAAGGGCTTCAAGTCGCatggggtggaagggagagaTGTGGTCAGCCTTCTGAGGAAAGCCATCATAAAGAGAGGGGACTTTGACATTGACATTGTGTCGGTGATCAACGACACTGTGGGCACCATGATGACCTGTGGATACGATGACCATCACTGTGAAATAGGCCTAATTGTCGGCACTGGCACCAATGCCTGCTACATGGAGGAGATGCGTCACCTGGAGCTGGTGGAAGGGGACGAGGGGAGGATGTGTGTTAACATGGAGTGGGGGGCATTTGGGGACGATGGCGCTCTGGATGATCTTCGTACAGACTTCGACCAGGAGATCGACGCCGGCTCCCTCAACCCCGGCAAACAGctgtttgaGAAGATGATCAGTGGGATGTACATGGGCGAGCTGGTGCGTCTGATCCTAGTAAAGATGGCCAAGGAGGACATGGTGTTTCAGGGTCACATCACCCCTGACCTCGTCACCAATGGACAACTCCAGACCAGCTTTGTCTCTGCCATCGAGAATGACAAAGACAAGGAGGGTCTGGTGAGTACAGAGAAGATGCTGAGGGGGCTGGGCCTGGACCCCTCTGTGGAGGACTGCGTGGCCACTCGGAGGGTGTGTCAGGTGGTGTCGACCCGGGCCGCCCACCTGTGTGCTGCCACCCTGGCCGCTGTGTTAAGACAGATCAGAGACAACAAGGCTGCAGAGAGGCTGAGGACAACAATAGGAGTGGACGGCTCTGTCTACAAGTACCACCCACAGTTTGCGCGGCGGCTCCACAAGATGGTGCGGCGGCTGGTGCCGGATTGCGATGTACGTTTCCTGCGCTCGGAGGACGGAAGTGGGAAGGGAGCGGCCATGGTGACAGCAGTGGCGTTTCGGCTGGCTATCCAGCATGCCGAGCGGCAGCGTATCCTGGACGCTCTGCGTCTGAACCAGGAGCAGCTGCTGGACGTGAAAAGGCGGATGGGAGAGGAGATGAACAGAGGCTTGGCCAAGGAGAGTCATGACCAGGCCACCGTCAAGATGCTGCCCACCTTTGTTCGCTCCATGCCCGACGGCACAGAGAGCGGTGAATTCTTGGCCCTGGACCTGGGAGGGACCAACTTCCGGGTTCTGCTGGTGCGTGTGCGGCGCGGGAAGAGACGCAGTGTGGAGATGCACAACAAGATCTACTCCATTCCCCAGGAGGCCATGCAGGGCACTGGAGAGGAGctGTTTGACCACATAGTGCACTGCATCGCTGACTTCCTGGAGTACATGGGTATGAAAGGAGCGTCCTTGCCCCTCGGCTTCACCTTCTCCTTCCCCTGCCATCAGAGCAAACTGGACCAGggcATCCTGTTAAAGTGGACCAAGGGTTTCAAAGCTACTGGTTGCGAGGGGGAGGATGTTGTCACTCTACTGAAGGATGCTATCTACCgcagagagGAGTTTGACCTGGACGTGGTTGCCGTGGTGAATGATACGGTGGGCACCATGATGACATGTGGCTACGAGGACCCACTGTGTGAGGTGGGCCTCATCGTAGGTACTGGCACCAACGTGTGCTACATGGAGGAGATGCAGAACATGGAGCTGTTGGATGGGAGCGAAGGGAAGATGTGTGTTAACATGGAGTGGGGGGCGTTCGGGGACCATGGAGAGCTGGACGACTTCAGTACAGACTTCGACAAAGCTGTGGATGAGCACTCCGCCAACCCTGGAAAACAGACgtatgAGAAGATGATCAGTGGGATGTACCTTGGGGAGATAGTGAGGAACGTACTGCTGGAGTTCACTACTAAGGGACTGCTGTTCCGTGGCAAACTCTCTGAGAGGCTCAAGACCAGAGGCATCTTTGAAACCAAGTTCCTCTCCCAGATCGAGAGTGACCGTCTGGCCCTGAGGCAGGTGCGCTCCATCCTGCAGCACCTGGGTCTGACCAGCTCTACGTGTGACGACAGCATCCTGGTGAAGGAGGTGTGTAGCGTGGTGGCTTGCCGCGCTGCCCAGCTCTGTGGTGCCGGCCTGGCCGCCGTGGTCGATAAGATCCGGCAGAACCGCAACCTCCCTGAGCTCAAAATCACAGTGGGTGTCGACGGAACACTCTACAAACTACACCCAcaCTTCTCCAACTTCATGCATGAGACTGTCAGTGACCTGGCGCCGCAGTGCAAGGTCACTTTCATCCAATCAGAGGATGGCAGTGGGAAGGGGGCGGCTCTCATAACGGCGGTGGCTTGTCGCATCCGAGACGCCGGGCAACGCTGAGCGGGGGAGTTCTGGAGAGCTTGTGTGGGTGTGGATGGCGGCAAAttaaacaaagagatcttctgttggatctgacaattcatcttgataGTTGTACAGTTGTCTTAAATAAAACTATGAAGGACcttggcatta

Function

NR:

description
hexokinase-2-like

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0051156 glucose 6-phosphate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0001678 cellular glucose homeostasis biological_process
GO:0005829 cytosol cellular_component
GO:0005524 ATP binding molecular_function
GO:0008865 fructokinase activity molecular_function
GO:0004340 glucokinase activity molecular_function
GO:0019158 mannokinase activity molecular_function

KEGG:

id description
K00844 HK; hexokinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621928.2 True 2898 mRNA 0.56 19 65940106 66043855

Neighbor

gene id symbol gene type direction distance location
LOC100653466 LOC106580488 coding downstream 826489 65104615 ~ 65113617 (-)
LOC110536236 LOC106580470 coding downstream 1237099 64672009 ~ 64703007 (-)
dgcr8 LOC106580468 coding downstream 1271192 64658998 ~ 64668914 (-)
LOC110536235 LOC106580467 coding downstream 1297951 64636219 ~ 64642155 (-)
LOC110536230 LOC106580464 coding downstream 1423778 64509358 ~ 64516328 (-)
LOC110536255 LOC106580502 coding upstream 192693 66236548 ~ 66248437 (-)
erlin2 erln2 coding upstream 208489 66252344 ~ 66279789 (-)
LOC110536257 LOC106580503 coding upstream 252847 66296702 ~ 66300270 (-)
LOC110536259 LOC106580505 coding upstream 456567 66500422 ~ 66510614 (-)
trnag-ccc-3 NA coding upstream 467876 66511731 ~ 66511801 (-)
G1007019 NA non-coding downstream 28879 65910913 ~ 65911227 (-)
G1006880 LOC106581475 non-coding downstream 145092 65748948 ~ 65795014 (-)
G1006847 NA non-coding downstream 177495 65750720 ~ 65762611 (-)
G1006879 NA non-coding downstream 192340 65747486 ~ 65747766 (-)
G1006878 NA non-coding downstream 194147 65745714 ~ 65745959 (-)
G1007345 NA non-coding upstream 82632 66126487 ~ 66146929 (-)
G1007343 NA non-coding upstream 99345 66143200 ~ 66145085 (-)
G1007312 NA non-coding upstream 109292 66153147 ~ 66154824 (-)
G1007357 NA non-coding upstream 119135 66162990 ~ 66163214 (-)
G1007359 NA non-coding upstream 120729 66164584 ~ 66164814 (-)
G1006106 NA other downstream 840550 65098960 ~ 65099556 (-)
G1005628 LOC106580457 other downstream 1576329 64360764 ~ 64363777 (-)
G1004487 NA other downstream 2138104 63801529 ~ 63802002 (-)
LOC110536206 LOC106580443 other downstream 3193858 62740236 ~ 62804200 (-)
LOC110536201 LOC106580439 other downstream 3250784 62663428 ~ 62689389 (-)
G1007506 NA other upstream 328787 66372642 ~ 66372949 (-)
G1009720 NA other upstream 1927216 67971071 ~ 67971328 (-)
G1010443 NA other upstream 2643402 68687257 ~ 68687962 (-)
G1010922 NA other upstream 3072652 69116507 ~ 69119486 (-)
G1011014 NA other upstream 3261481 69305336 ~ 69306428 (-)

Expression

LOC110536248(LOC106580495) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110536248(LOC106580495) Expression in each Bioproject

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LOC110536248(LOC106580495) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 1250.
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Co-expression Network