XLOC_028449 (tbc1d30)


Basic Information

Item Value
gene id XLOC_028449
gene name tbc1d30
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4484651 ~ 4507761 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055219
AACCGCAGCCTGTTTGAGTCCCTGCCAACCCGCGGCTCAAGAAATGGAACAGACCCGGAACTCCAGTTCCTTATTGATCCACCTAAAACAATCTTTGCGGAGTCCCAATGCGTTCACCACAAAGTAATGCTGAACTTTAAAGAGAAATAAACCATGTCAGCCGCGGTGGAAGTGGCGAAAGAGGAGCTGAAGGAGGTGAACATATGTGACATCTGCCCGGAGGAGGAGAGCGGAGTTTTCCTCAGCGCAGGTGCGTCCTACCTGGACGGCTTTTCGGGGTTTCATAAGTGGGTCTcaaagattgagGTGTCGGATGGAGACTGTGAGAAAACGTCATCCAGGAAGGCTCACGAGGAGGAGAAAGGAGGTCTGTATTTTGATCGAGAGGAGCTGAAAGACTCCCGGGCTTCATCTTTGGTGGATTGTTTGCTGGTGGAGCTTTATGACACGTACAGTCACGGTGTCCCAGGCTTGGACAGCTCCACTGAGGCCTCCAGCTCGGACGCTTTTCTGGGCAGGAGCAACAGCGGCTCTAGCTTTCTGCAGGAGCTCCAGGAGAAGCACACCAGGCGCCATCAGGTCAAATATCTGGCTCAGAAAGGTCCAGAAGAGCTGAAGTGGATTGTCCAGGAGGTGAAATACCGCATCGCTGTACAGTCGGCTAAACTAGTGCGGCAGGCCAAAAGGAAAGATCGACTCCGGCAGAAGTTCCAGAAGAACTGCGATATCGTGACCGCCTGCCTGCAAGCCGTCTCGCAGAAAAGACGAGTGGACACCAGGTTGAAGTTCACTATCGAACCCTCTCTAGGCAAGAACGGCTTTCAGCAATGGTACGACGCTCTGAAAGCAGTGGCCAGACTGCCGGTCGGCATTCCCAAAGAGTGGAGGAAAAGAGTCTGGCTGACCCTGGCTGACCAGTATCTTCACAGCATCTCTATAGACTGGGAGAAAACCATGAGATTTGCCTTCAATGACCGCAGCAATCCAGACGATGACTCTTTGGGAATACAAATAGTAAAGGATCTGCACCGGACAGGCTGCAGCTCTTACTGTGGGCAGGAGGCGGAGCAGGACCGGGTGGTGCTGAAGCGGGTGCTGCTGGCTTATGCCCGCTGGAACAAGACTGTAGGATACTGTCAGGGATTTAATGTGCTGGCGGCACTTATCCTGGAGGTCACTGAGGGCAATGAAGGAGACGCTTTAAAGGTGATGATCTATTTGATCGACAAGGTGCTTCCGGACAGTTATTTCGCCAATAATCTGCGAGCACTCTCTGTGGACATGGCCGTGTTCAGAGACCTGCTGCGGCTGAAGCTTCCAGAACTTTCTCAGCACCTTCACCACCTCCAAAAAGTGGCCAATCGCGAAGCTGGAGGCAGCTACGAGCCTCCACTCACCAACGTTTTCACCATGCAGTGGTTTCTGACCATGTTTGCCACGTGTTTGCCTCATCACACCGTGCTGAAGATCTGGGATTCGGTGTTTTTTGAGGGATCAGAAATGCTGCTGCGTGTCGCTCTGGCCATTTGGGCCAAACTGGGAGAGCGTATTGAGGAGTGTCAGACAGCAGatgaattttacagtattatgGGCTGCCTGACGCAAGAAATGCTGGAACACAAGCTCATCGACTCCAATGAACTCATGCAGACGGTTTACTCCATGGCTCCGTTCCCATTCCCACAGCTGGCTGAGCTCAGGGAGAAATACACCTATAACATCACACCGTTCCCTGCGCCGGTCAGAGCCAACAGCAGTCTGGCCCTCCATGGTTGGGAGAGTGATGATGATGCTGACATGGATGATGAAGACTCTATCGTCACCGCTCTGGGCTGTCTGGGACCACTAGGTGGCCTCCTGGCCCCTGAGATCCAAAGATACCAAAGGCACCTCAAAGATCAGAGAGCGGAGCAGAGCTGTAATGGCAGTAATATGGCAGAGCTCAGTCCCGGGGCGGTTGGCGCAGGACGAGCCGAACACCAGGCTGCCATCAACAGCATGATGCTGGAGCGCATGAGCACTGACATCAGCGCCCTGAAGAAACAGTACTCGCGTATTAAACAGAAACAACAGCAGCAGGCCGGACTGCTCTACATTCACACAGATAAGTGTCCAGCCACCAGTGTTCTTGCCTCCCAAATTGGTCCATCCCCAGTGGTCAATCACCTTCTCCTGGGCAGGAGACCAAGACCCTGTGAACGATCCTTAAAGAATGGTATGATCCATAACGGTGGATCTCCTCAATCCCACTCAACGCCGCTTCTGGATCAGATGGTTCGGTCCAGACATCATTCGCCCTGGCGCACGCATGTTCGAGCACACCGGAGGAACATCGCAAGAGCGAGGGCTCAGCTCGGCTTTGATGACTCTCTGGAGGCAGAAGACGATCAGACGGATGAAAGCAAAACTGAAGGAGCATCTATGGAGGGAGAGGAGACCAAATCCGAGGAAGCAGACGAAGATAAAATTGAAAACACGGCAGCTGGAGGCTCAGATGTTTCTAAGCAAGAACTGCAGGAGATTGATAGACAGCTGTCTGCACTAGAACTGGACCCGGAATCTTCACCAGATCCGTCAACTCCAGAACCAGCTTTGGATCCAGACCCACAATCAGATCCAACTATTACTCCAGAACCACAGGCAGATCCCAATCCCACTACTCCAGATCCTGATCCCACCATTCAAGATCCCAGTTTCACCATTCAAAATCCCAATTCCACCATTCAAAATCCCAGTCCCACCATTCAAGAATCCAAACCCACCACTAAAGATTCCTGTTTCACCATTCAAAATCCCAATTCAATTGTTCAAAGTCCCAGTTCTGCTGTTCAAAATCCCAGTCTCGCCATTCAAAATCCAAATACCATTGTTCAAAATCCCAACTCCTCCATTCAAAATCCCAATCCCACCATTCAAGATCCCAATCCCACAGATCAAAATCCCAATTCCAGCATTCAAAACCTCAATATCACCATTCAAGATGTCAATCCCACCACTCCACCTCAGGCTCCGCTCACATCCAGCCGCCGTCCCGGTTCCGACTCCTCCAGCTCCGAAAGTGGAAGCTCCCTGAGAAGAAGTGCTTCATCATTAGCAGGAGATCCTCCAAAAGCACAGCAGCAGATCTACTCCCCATTCCCTTGCATCAAAACACCCCGAAAATCCACGGCTGCAAGAAACCTGGGTCTCTACGGCCCAACAGCCAGAACTCCAAACGTACACTTCCCACAGATGAGCAGAAGCATGAACCGTGTAGGAAACACCACAAAACGCCGGTGATGAGTTGTAGACTGCTAATAATAAAGAAGAGCACTTATTGGGTTCCTCTTCATTTGGGTTTAAATTCCAGACTTGTGAAAGCACATGCATTTTGAAGTCTAATATGCTTCCAGATACTtaagcactgcaaaaaaaaaaaaaaa
>TCONS_00055220
CAGATCCTGCCTCACGACTCAAACACACGCAGAAATGCTGCTAACTTCACTTTAGGTCTGTCTGTCATTTTAATAGCATGAAACAGTAACACAGATGGACTCAGGAGTGGACACCAGGTTGAAGTTCACTATCGAACCCTCTCTAGGCAAGAACGGCTTTCAGCAATGGTACGACGCTCTGAAAGCAGTGGCCAGACTGCCGGTCGGCATTCCCAAAGAGTGGAGGAAAAGAGTCTGGCTGACCCTGGCTGACCAGTATCTTCACAGCATCTCTATAGACTGGGAGAAAACCATGAGATTTGCCTTCAATGACCGCAGCAATCCAGACGATGACTCTTTGGGAATACAAATAGTAAAGGATCTGCACCGGACAGGCTGCAGCTCTTACTGTGGGCAGGAGGCGGAGCAGGACCGGGTGGTGCTGAAGCGGGTGCTGCTGGCTTATGCCCGCTGGAACAAGACTGTAGGATACTGTCAGGGATTTAATGTGCTGGCGGCACTTATCCTGGAGGTCACTGAGGGCAATGAAGGAGACGCTTTAAAGGTGATGATCTATTTGATCGACAAGGTGCTTCCGGACAGTTATTTCGCCAATAATCTGCGAGCACTCTCTGTGGACATGGCCGTGTTCAGAGACCTGCTGCGGCTGAAGCTTCCAGAACTTTCTCAGCACCTTCACCACCTCCAAAAAGTGGCCAATC

Function

symbol description
tbc1d30 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D30 (TBC1 domain family member 30).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-2064 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D30 (TBC1 domain family member 30).

Ensembl:

ensembl_id ENSDARG00000075281

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055219 False 3422 mRNA 0.51 14 4484651 4507761
TCONS_00055220 True 701 processed_transcript 0.51 6 4492566 4496791

Neighbor

gene id symbol gene type direction distance location
XLOC_028448 ntf3 coding downstream 52676 4397503 ~ 4431975 (-)
XLOC_028447 CU468826.3 coding downstream 97639 4376498 ~ 4387012 (-)
XLOC_028446 CU468826.1 coding downstream 109947 4321168 ~ 4374704 (-)
XLOC_028445 cd9b coding downstream 222978 4234994 ~ 4261673 (-)
XLOC_028443 NA coding downstream 255496 4178834 ~ 4229155 (-)
XLOC_028450 FP102892.1 coding upstream 6677 4514438 ~ 4516508 (-)
XLOC_028451 zgc:194209 coding upstream 18487 4526248 ~ 4535189 (-)
XLOC_028452 rassf3 coding upstream 32462 4540223 ~ 4592287 (-)
XLOC_028453 CABZ01020840.1 coding upstream 94054 4601815 ~ 4612116 (-)
XLOC_028454 DGKI coding upstream 119033 4626794 ~ 4706893 (-)
XLOC_028444 NA non-coding downstream 274187 4207590 ~ 4210464 (-)
XLOC_028442 NA non-coding downstream 320775 4162825 ~ 4163876 (-)
XLOC_028441 NA non-coding downstream 327116 4147628 ~ 4157535 (-)
XLOC_028461 NA non-coding upstream 432706 4940467 ~ 4962892 (-)
XLOC_028462 NA non-coding upstream 455196 4962957 ~ 4967711 (-)
XLOC_028471 NA non-coding upstream 913985 5421746 ~ 5459469 (-)
XLOC_028472 NA non-coding upstream 920557 5428318 ~ 5441954 (-)

Expression


Co-expression Network