rnf181 (rnf181)


Basic Information

Item Value
gene id rnf181
gene name rnf181
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 66565298 ~ 66572050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621952.2
CtgaaccccacccacccacacataaTGTGTGATAGGACGGGTAAAAGTCACGTGATGGTGCATTGTCATACCCGGTAGACAGTGTggtgtagctagctggctagttgCTGCACATTTCAGGTTATGACAAAACACAGGTAATATTGGTATTCTGAAGATGGCTTCTTATTTTGATGAGCATGACTGTGAACCAACGAATCCCGAAGAACAGTACCGTCAGAATGCACTACTAGAACTGGCCAGGTCTTTGATGCAGGGCCTCGACATTGACTCGGGAGCGTTTGACCTGTCGGACTGGGACCAGCGTCTTCCTCCCCCAGCTGCTAAAACAGCTGTCCAAACCTTACCTGTGGTTGTCATATCCCCAGAGCAAGCAGACAAAGGGCTGAAGTGTCCTGTGTGTCTGCTGGAGTTTGAGGAGCAGGAGACAGTGAAGGAGATGCCCTGCAAACACCTCTTTCACTCTGGTTGTATCCTGCCCTGGTTAGGGAAGACAAATTCTTGCCCGCTATGCCGTCTCGAGCTACCAACCGACAATCCAGAGTATGAAGAGTTCAAGAAGGACAAGgacaggagaaaacagagggAAAACAGACTGGAAGATCTGCATGGAGCCATGTACACATAACGGCTCAGAGCACACTGCTTATTGCTGATTTCCCCTTTCTAGCGTTGGGTCGCAATAGAATTAAGAATTGACCAAAGCTGCAAATAATATTATGTAGCTATTATGTTTTATCGTATGTACTGTAAATATGTCCGTTTTAAATACAGTCAATTGTACAAAGACTCATTTTGTGATTCAAATTATGGATGATCATTATACAATGAAAGAAATACTGAGACAGTTGAGTCTGTTTGATCTCTACATTCACTGCCTTAACACATCAAAGCATTTCTTCCTTTTCCCCAAGATGCAATACATTGACCAAAACAGATGATTAAATGGCTTTTCATGGCATATGTTTTGTTGGCCTCATATTTATCAGACTTTAAATTCAATCTGTTTATAGTGTTGCTTGCTTTGGCATCAGCATTAAAGACCCAGTGCAGTCAATTctga
>XM_021621951.2
TCCtgaaccccacccacccacacataaTGTGTGATAGGACGGGTAAAAGTCACGTGATGGTGCATTGTCATACCCGGTAGACAGTGTggtgtagctagctggctagttgCTGCACATTTCAGGTTATGACAAAACACAGATTGGTATTCTGAAGATGGCTTCTTATTTTGATGAGCATGACTGTGAACCAACGAATCCCGAAGAACAGTACCGTCAGAATGCACTACTAGAACTGGCCAGGTCTTTGATGCAGGGCCTCGACATTGACTCGGGAGCGTTTGACCTGTCGGACTGGGACCAGCGTCTTCCTCCCCCAGCTGCTAAAACAGCTGTCCAAACCTTACCTGTGGTTGTCATATCCCCAGAGCAAGCAGACAAAGGGCTGAAGTGTCCTGTGTGTCTGCTGGAGTTTGAGGAGCAGGAGACAGTGAAGGAGATGCCCTGCAAACACCTCTTTCACTCTGGTTGTATCCTGCCCTGGTTAGGGAAGACAAATTCTTGCCCGCTATGCCGTCTCGAGCTACCAACCGACAATCCAGAGTATGAAGAGTTCAAGAAGGACAAGgacaggagaaaacagagggAAAACAGACTGGAAGATCTGCATGGAGCCATGTACACATAACGGCTCAGAGCACACTGCTTATTGCTGATTTCCCCTTTCTAGCGTTGGGTCGCAATAGAATTAAGAATTGACCAAAGCTGCAAATAATATTATGTAGCTATTATGTTTTATCGTATGTACTGTAAATATGTCCGTTTTAAATACAGTCAATTGTACAAAGACTCATTTTGTGATTCAAATTATGGATGATCATTATACAATGAAAGAAATACTGAGACAGTTGAGTCTGTTTGATCTCTACATTCACTGCCTTAACACATCAAAGCATTTCTTCCTTTTCCCCAAGATGCAATACATTGACCAAAACAGATGATTAAATGGCTTTTCATGGCATATGTTTTGTTGGCCTCATATTTATCAGACTTTAAATTCAATCTGTTTATAGTGTTGCTTGCTTTGGCATCAGCATTAAAGACCCAGTGCAGTCAATTctga

Function

symbol description
rnf181 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human RNF181 (ring finger protein 181).

NR:

description
E3 ubiquitin-protein ligase RNF181

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K22378 RNF181; E3 ubiquitin-protein ligase RNF181

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621952.2 False 1063 mRNA 0.44 6 66565298 66572048
XM_021621951.2 True 1060 mRNA 0.44 6 66565298 66572050

Neighbor

gene id symbol gene type direction distance location
LOC110536260 LOC106580506 coding downstream 41202 66511861 ~ 66524096 (-)
trnag-ccc-3 NA coding downstream 53497 66511731 ~ 66511801 (-)
LOC110536259 LOC106580505 coding downstream 54684 66500422 ~ 66510614 (-)
LOC110536257 LOC106580503 coding downstream 265028 66296702 ~ 66300270 (-)
erlin2 erln2 coding downstream 285509 66252344 ~ 66279789 (-)
LOC110536263 LOC106580509 coding upstream 1326 66573376 ~ 66579635 (-)
LOC110536264 LOC106580511 coding upstream 19622 66591672 ~ 66596295 (-)
LOC110536265 LOC106580510 coding upstream 25419 66597469 ~ 66625841 (-)
LOC110536266 LOC106580554 coding upstream 157180 66729230 ~ 66765764 (-)
LOC110536269 NA coding upstream 300557 66872269 ~ 66874782 (-)
G1007726 NA non-coding downstream 6095 66534132 ~ 66559203 (-)
G1007720 NA non-coding downstream 35935 66528837 ~ 66529363 (-)
G1007706 NA non-coding downstream 66122 66498892 ~ 66499176 (-)
G1007693 NA non-coding downstream 87191 66477840 ~ 66478107 (-)
G1007692 NA non-coding downstream 89077 66475713 ~ 66476221 (-)
G1007776 NA non-coding upstream 64306 66636356 ~ 66636850 (-)
G1007779 NA non-coding upstream 66696 66638746 ~ 66638960 (-)
G1007841 NA non-coding upstream 116241 66688291 ~ 66688885 (-)
G1007855 NA non-coding upstream 125546 66697596 ~ 66697901 (-)
G1007506 NA other downstream 192349 66372642 ~ 66372949 (-)
G1006106 NA other downstream 1465742 65098960 ~ 65099556 (-)
G1005628 LOC106580457 other downstream 2201521 64360764 ~ 64363777 (-)
G1004487 NA other downstream 2763296 63801529 ~ 63802002 (-)
LOC110536206 LOC106580443 other downstream 3819050 62740236 ~ 62804200 (-)
G1009720 NA other upstream 1399021 67971071 ~ 67971328 (-)
G1010443 NA other upstream 2115207 68687257 ~ 68687962 (-)
G1010922 NA other upstream 2544457 69116507 ~ 69119486 (-)
G1011014 NA other upstream 2733286 69305336 ~ 69306428 (-)
G1012814 NA other upstream 4312426 70884476 ~ 70890991 (-)

Expression


Co-expression Network