LOC110536264 (LOC106580511)


Basic Information

Item Value
gene id LOC110536264
gene name LOC106580511
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 66591672 ~ 66596295 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621956.2
CGAAGAGGTGGGTCAAGGCGAAGGACTTTACTttaaggaagaaaaaaaaagttaatgAGCAGTAGGAGTCAACGTAGGCTGTTCAGCAAGAACATCAATATCGCATTATCCATAAAGAACAGTTATATAAATTGGATACATCGGGATTTTAAATAAACTCTCCGTTTACGATAAACCAAGATCGAAGACGATGGATAATGATTTGGAGCAGGGAGAGGTGGTGGAGCAGGACAAGGTGAGGACCCTGCAGTCTCAGGTGGAGGGAGTGAAGGACATCATGACCCAGAACGTGGACCGGATCCTGGCCCGGGGAGAGAGACTAGACGACTTGATGGGCAAGTCAGAGGACCTGCAGGCTGGGGCTGAGGACTTCAAGCACACGTCCCAGAAGGTGGCTCGCTCCTACTGGTGGAAGAACATGAAGCTGTGGGTGGTGATCGTGGTCATTGTCCTCGTCATAATCCTCATCATCGTACTGCTCAGCACTGGCGTCATCCCAACCAGCTCCCCTGTTCCCCCACTTCCCAAACCTACTAAAAGACCAAACTAGTCATGTTTTTCCTCACTGTGTTGTGTTTTAGCTGAGCTGGTTGCTAGAGAGGATGTCAGTGGGTTTTTTTGTTTTGAAAGATGGGGAAAACTTAGCTGCAATGGTATAGTGAAAGAAAGGGGGAAttgagagagggaatggagagtcTGAAGAAGCATGAGAGCCTTTTGACCTCTATCCATGACCTGATACTCCATCATACACAAACTGCGGGAACTCATGTCATGACTTAATGTGGGTTCTCATGGTCCATGTACTCAGGCCTTGGAAACTCTGGCTAACTCCAGACAACCTGTTGTGAGAGAGGTGGAATTGAACAGCTAACAACTCCCCTTGCTGGTCCAAACGAGTGTCATAGCTCCTAGGACTACTGTCGGCCATCTCATAGCTTTGCATAGTAGCTTTTGGTAGGCCCACCTGTATTCTTTAACGACTTGTGGGTTTTAACTCATCTCACTGTCCACTCCAATGTTACAATACCAGCCATGCTTTGGGGAGGTCAAGGAGTTAACTCCCATGCTTGTATATAGTTATCATACCTGTATATACATTTGTAAAGCACCCACATGGGGCCCTAAACCATTCCAATAGTGTAACAATGAGGTTAATTTGAGGctatttattgttttatttttgtcaTCCCTACTGAACATCTTTTCTTTTTTGTTTTTCATATGACTGTATTAATGTTGTTTTTAATCAACAAAACCAATTAAAGAAAATTATATGGACCCCCCCCCAGAGTCCTATCAGTAGATATGTGGTTTAGAGCTATAATTGTATTTTAGACAAGTAGGATGTATTGGGAATTTGGGCTAGTTTCAATTGCTATAGAATTCTATTATTTTGTTTTTCATTCATTGATGGAGTTCAATCATGTTATATCTGATTAATTATAGAATAAATAGCATTTACTTCCACA
>XM_021621954.2
gtcggaaaaTGTAGGACATCATTtcagagctccgacctgaagatcgctgacgtcatgatttgacctcgtttttttcctgagttcccagttgttttgaacgtagTGAAGTCGGAGTTCCCAGTTATGAACGCGGCATCGGTCCAGACAGCAGATAGAGGTGCTGACGTCAATCGACCTGCTGTATTTTATACAGTTCTTGCACACAGAAGTTACAGGTGCACCAGAGAACGGCGTGCTCCAACGCCCTCGTGAGGATGCAAAGTGGAAGCAGAAGACCCGAAGAGGAGCAGGGAGAGGTGGTGGAGCAGGACAAGGTGAGGACCCTGCAGTCTCAGGTGGAGGGAGTGAAGGACATCATGACCCAGAACGTGGACCGGATCCTGGCCCGGGGAGAGAGACTAGACGACTTGATGGGCAAGTCAGAGGACCTGCAGGCTGGGGCTGAGGACTTCAAGCACACGTCCCAGAAGGTGGCTCGCTCCTACTGGTGGAAGAACATGAAGCTGTGGGTGGTGATCGTGGTCATTGTCCTCGTCATAATCCTCATCATCGTACTGCTCAGCACTGGCGTCATCCCAACCAGCTCCCCTGTTCCCCCACTTCCCAAACCTACTAAAAGACCAAACTAGTCATGTTTTTCCTCACTGTGTTGTGTTTTAGCTGAGCTGGTTGCTAGAGAGGATGTCAGTGGGTTTTTTTGTTTTGAAAGATGGGGAAAACTTAGCTGCAATGGTATAGTGAAAGAAAGGGGGAAttgagagagggaatggagagtcTGAAGAAGCATGAGAGCCTTTTGACCTCTATCCATGACCTGATACTCCATCATACACAAACTGCGGGAACTCATGTCATGACTTAATGTGGGTTCTCATGGTCCATGTACTCAGGCCTTGGAAACTCTGGCTAACTCCAGACAACCTGTTGTGAGAGAGGTGGAATTGAACAGCTAACAACTCCCCTTGCTGGTCCAAACGAGTGTCATAGCTCCTAGGACTACTGTCGGCCATCTCATAGCTTTGCATAGTAGCTTTTGGTAGGCCCACCTGTATTCTTTAACGACTTGTGGGTTTTAACTCATCTCACTGTCCACTCCAATGTTACAATACCAGCCATGCTTTGGGGAGGTCAAGGAGTTAACTCCCATGCTTGTATATAGTTATCATACCTGTATATACATTTGTAAAGCACCCACATGGGGCCCTAAACCATTCCAATAGTGTAACAATGAGGTTAATTTGAGGctatttattgttttatttttgtcaTCCCTACTGAACATCTTTTCTTTTTTGTTTTTCATATGACTGTATTAATGTTGTTTTTAATCAACAAAACCAATTAAAGAAAATTATATGGACCCCCCCCCAGAGTCCTATCAGTAGATATGTGGTTTAGAGCTATAATTGTATTTTAGACAAGTAGGATGTATTGGGAATTTGGGCTAGTTTCAATTGCTATAGAATTCTATTATTTTGTTTTTCATTCATTGATGGAGTTCAATCATGTTATATCTGATTAATTATAGAATAAATAGCATTTACTTCCACA

Function

NR:

description
vesicle-associated membrane protein 8-like isoform X2

GO: NA

KEGG:

id description
K08512 VAMP8; vesicle-associated membrane protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621956.2 False 1472 mRNA 0.43 3 66591672 66595886
XM_021621954.2 True 1551 mRNA 0.45 4 66591672 66596295

Neighbor

gene id symbol gene type direction distance location
LOC110536263 LOC106580509 coding downstream 12037 66573376 ~ 66579635 (-)
rnf181 rnf181 coding downstream 19622 66565298 ~ 66572050 (-)
LOC110536260 LOC106580506 coding downstream 67576 66511861 ~ 66524096 (-)
trnag-ccc-3 NA coding downstream 79871 66511731 ~ 66511801 (-)
LOC110536259 LOC106580505 coding downstream 81058 66500422 ~ 66510614 (-)
LOC110536265 LOC106580510 coding upstream 1174 66597469 ~ 66625841 (-)
LOC110536266 LOC106580554 coding upstream 132935 66729230 ~ 66765764 (-)
LOC110536269 NA coding upstream 276312 66872269 ~ 66874782 (-)
LOC110536273 LOC106580518 coding upstream 395881 66992176 ~ 67012775 (-)
LOC110535096 zmat4 coding upstream 560735 67157030 ~ 67344175 (-)
G1007726 NA non-coding downstream 32469 66534132 ~ 66559203 (-)
G1007720 NA non-coding downstream 62309 66528837 ~ 66529363 (-)
G1007706 NA non-coding downstream 92496 66498892 ~ 66499176 (-)
G1007693 NA non-coding downstream 113565 66477840 ~ 66478107 (-)
G1007776 NA non-coding upstream 40061 66636356 ~ 66636850 (-)
G1007779 NA non-coding upstream 42451 66638746 ~ 66638960 (-)
G1007841 NA non-coding upstream 91996 66688291 ~ 66688885 (-)
G1007855 NA non-coding upstream 101301 66697596 ~ 66697901 (-)
G1007858 NA non-coding upstream 102822 66699117 ~ 66699354 (-)
G1007506 NA other downstream 218723 66372642 ~ 66372949 (-)
G1006106 NA other downstream 1492116 65098960 ~ 65099556 (-)
G1005628 LOC106580457 other downstream 2227895 64360764 ~ 64363777 (-)
G1004487 NA other downstream 2789670 63801529 ~ 63802002 (-)
LOC110536206 LOC106580443 other downstream 3845424 62740236 ~ 62804200 (-)
G1009720 NA other upstream 1374776 67971071 ~ 67971328 (-)
G1010443 NA other upstream 2090962 68687257 ~ 68687962 (-)
G1010922 NA other upstream 2520212 69116507 ~ 69119486 (-)
G1011014 NA other upstream 2709041 69305336 ~ 69306428 (-)
G1012814 NA other upstream 4288181 70884476 ~ 70890991 (-)

Expression


Co-expression Network