Fish Transcriptome and Expression Database

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model fish

XLOC_002845 (CU861448.1)

Basic Information

Item	Value
gene id	XLOC_002845
gene name	CU861448.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007121.7
NCBI id	CM002894.2
chromosome length	45420867
location	29708068 ~ 29708182 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005273
GCCGACAGCTAGCTCATTGCAATTCTCAtgtggtcgcccactgaagctaagcagggctgcgcccagtcggtacctggatgggagaccacttgggaaagctaggttgctgccggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000116971

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00005273	True	115	rRNA	0.58	1	29708068	29708182

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_002843	NA	coding	downstream	216981	29266270 ~ 29491087 (-)
XLOC_002844	tmem126a	coding	downstream	435311	29269998 ~ 29272757 (-)
XLOC_002842	ccdc83	coding	downstream	471208	29226180 ~ 29236860 (-)
XLOC_002841	BX005332.1	coding	downstream	570064	29128202 ~ 29138004 (-)
XLOC_002840	zpld1a	coding	downstream	587533	29112756 ~ 29120535 (-)
XLOC_002846	si:ch73-261i21.2	coding	upstream	22878	29731060 ~ 29733194 (-)
XLOC_002847	ift46	coding	upstream	27718	29735900 ~ 29744921 (-)
XLOC_002848	vps11	coding	upstream	42847	29751029 ~ 29768556 (-)
XLOC_002849	si:ch73-261i21.5	coding	upstream	85635	29793817 ~ 29809105 (-)
XLOC_002850	hist2h2l	coding	upstream	107462	29815644 ~ 29816467 (-)
XLOC_002838	BX537347.1	non-coding	downstream	784435	28923517 ~ 28923633 (-)
XLOC_002837	BX537347.2	non-coding	downstream	785817	28922135 ~ 28922251 (-)
XLOC_002834	NA	non-coding	downstream	1243042	28460213 ~ 28465026 (-)
XLOC_002854	CT737197.1	non-coding	upstream	822961	30531143 ~ 30531257 (-)
XLOC_002858	NA	non-coding	upstream	1554670	31262852 ~ 31295006 (-)
XLOC_002862	NA	non-coding	upstream	2369629	32077811 ~ 32084624 (-)
XLOC_002863	NA	non-coding	upstream	2508231	32216413 ~ 32250846 (-)
XLOC_002867	NA	non-coding	upstream	2876503	32584685 ~ 32591462 (-)

Expression

Co-expression Network