LOC110536265 (LOC106580510)


Basic Information

Item Value
gene id LOC110536265
gene name LOC106580510
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 66597469 ~ 66625841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936165.1
gcaGTCACGATGAGCTCATCGTCCTCACCCCTTTCCCGGGTGCGTCAGTGGGCCTCACCGTCCCTGAAGCACAGGGGCGCCTCTCCTGTCGCGAGCAGCACCCCGCTCTTCGCATCTTTCGAGGGAAACAATGATGAGCTAGAGCGTCGTCAGAGGCGCAGGTCCCGGGTCATTGGCCTGCAAGCTGCCGCTGACTCCTCATTTAATGAATCTACCTCTCATAGCACCAAGGGGACCCCTGCTGCTGTGCCCAAACTGTCAAATGCACAGATCTCAGAGCATTACTCCACCTGCATCAAGCTCTCCACTGAAAATAAAATTACCACCAAAAATGCCTTTGGTCTCCACCTGATTGACTACATGGCTGACATCCTCAAACAGAAGGATTCTGAGCTCACAAATTTCAAGGTGGCAGCGGGTACCTTGGACGCCAGCACCAAGATTTACGCAGTCCGAGTGGATGCTGTCCATGCTGATGCCTACAGAGTACTGGGAGGACTGGGTGCTGAGACCAAGCCTGGGGAAGcaggagatgggggagagatggcgGAGGGTGCTGCAGGAGAGCTGGCTGCCAAGCAGgtggtgaagaagaagaagaggcctCCCAAAAAGACTGTGGAGCAGAACCTGAGCAACATCGACAGCTCTGAGTCGGAGAGGAAGTGTGAGGTCGACCCCATGTTCCAGCGCATGGCGTCGTCCTTCGATGAGAGCAGCACAGCAGGCGTATTCCTGTCGGTGCTGTTCAGTGAAGACAGTAGCTGTGAGCTGCTCTTCCCCTCCCACATGACCCTGCTGCACTCCACTCACTCCTGCTCCCAGTCTCCTCCGCAGCACGTCCCTTCGCTGCCCTTCACAGGTGGTCTCCAGCAGACCCAGGAGAAGAGCTCCATCTGCCCCTCCCTGGCAGACTTCTCTTTCACCAGCTGGAACCCTGACCAGACCATGACCCAGATGCTGGAGAAGATGAAGCAGGGGGATCACGTGTTTGACCGGAACGCGGAGCCGGATGAGGAGGAGTGTCAGGATTTTGGGGATAATTTTGATGGAGACTATGAGGAGGGTCAGGGGGATTATGGTGGAGAGGGCTCCAAAGAACACAAAGATGGCTGTAAGGCTGGAGGGCCGGGGAGAGGAAGGGATGTGATTCCCATTGGAGAGGGGGACATAGCCACCATGTGTCTGCAGCTGTCCAACCAGCCCAGAGAGTACTCCTACTTCAGCCCTAGGACCATGGCTACCTGGGCAGGTCCTGGCTACTGGCGCTTCAAACCTCTGCACAAGAaggacaACATGCCTGAGAAGGAGGGTCCCAAGAGGAAGTCTAAGAATGCCTTTGCAATTGACTTTAACGACCATGTCAACTTTGAAACCTACTTCTGCACCACTAGAGCTGCTACCACTATCATCAAGTCCGCCCTCAGTACCAGCAACAAGAAAACCACTCTAGCTGCAGACTTCCAGTTCCCCCTTAAGACCCTGTCCCAACTCAGCCTCAAACCTGCCAGCACATTGTGTAAAGAGGGCCAGAAGAGGTTGTCTGGAGAGCTGGAAGGCATCGGAGACTACGACTACAACAACGCCAACGACACAGCCAACTTCTGCCCTGGCCTGCAGGGTGGGGACAGTGATGATGGTGAAGGTTTCAGTAGAGGTGCAGATGACACCCAGCCTTCCGCAGACAGTAACCTCGCCTCCTCACAAGACCATGACGACGTGTCCACCTATGGGGAGGACGATCTGGTGCCAGAACCACACCGGGTGAACAAGATTGAGATAAACTATGCCAAAACAGCCAAGAAGATGGACATGAAGAGGCTCAAGAACATCATGTGGAATCTTCTGACTGGCAGTCTGGAAAAAACAGCCAAGGAGGTGGAGAATGCTGAGACTTCAGTGGTGTCTGGGGAGAAAGTCTTCAGTCAGACCACAAAGACTCTGCTTCAAAGCCTGCCCCCCACCATGGCTCAGAACCTGTCTGTGCCCCTGGCGTTCGTCGCCCTGCTGCACTTGGCCAATGAGAAGAATTTGGAGCTCGTGAAGGTGGACGACATGTCAGATATCCTCATCAAGCAAGGTCAATGAAAAGGGCTAAACTATGGGATTTAAACAGAGACTTGTTTCCTTTTCTCCTCAAACTGCTTATTCTCACTTTTTCTTGGTATATGATGAATTCCCGGCCATTCGTGTCAAAGTTGCCATCACATTTAGGTGAAATGTTATTTCTAGGAAATGTATAGTAAGTGTCCCTTAAAAATGACTAATCTGTTTATTACCTGAATAGTGTTTTTAACATATTTACCTGTACATTCAGTAGAACCTGTCCTTTTTTTTGTTCTACATCTATTGTGTGTAAATAactgtggaggctgctgaggggagagtggctcataataatgtctggaatggtatcaaacacatgaaaaccatgtgcttgataccattccattccagacatttattatgagtcgtcctcccctcaggagcctccactggtaaaTAATATAAATGCTTCACTCCTGCCTCCCTCAAGACTGTGTAATGTGTACAtaccaaaaataaataaaagtttgtTTTTCTACATTA
>XM_021621959.2
GGCCGGAGCTACCTCAATGGGGCGGGGTCGATTCAACATGGTAATGCCCACTGTCGTTACGTAAACCCTTCGGCGCACATGTTCAAATCTGATCAGGAACAAAAGTGCATTTGTGCAAAATACGCTTTGTTTTCATTTTAATGTAGCTATATATAAAGAAGCTGGAAATAATCGAGgcaGTCACGATGAGCTCATCGTCCTCACCCCTTTCCCGGGTGCGTCAGTGGGCCTCACCGTCCCTGAAGCACAGGGGCGCCTCTCCTGTCGCGAGCAGCACCCCGCTCTTCGCATCTTTCGAGGGAAACAATGATGAGCTAGAGCGTCGTCAGAGGCGCAGGTCCCGGGTCATTGGCCTGCAAGCTGCCGCTGACTCCTCATTTAATGAATCTACCTCTCATAGCACCAAGGGGACCCCTGCTGCTGTGCCCAAACTGTCAAATGCACAGATCTCAGAGCATTACTCCACCTGCATCAAGCTCTCCACTGAAAATAAAATTACCACCAAAAATGCCTTTGGTCTCCACCTGATTGACTACATGGCTGACATCCTCAAACAGAAGGATTCTGAGCTCACAAATTTCAAGGTGGCAGCGGGTACCTTGGACGCCAGCACCAAGATTTACGCAGTCCGAGTGGATGCTGTCCATGCTGATGCCTACAGAGTACTGGGAGGACTGGGTGCTGAGACCAAGCCTGGGGAAGgagatgggggagagatggcgGAGGGTGCTGCAGGAGAGCTGGCTGCCAAGCAGgtggtgaagaagaagaagaggcctCCCAAAAAGACTGTGGAGCAGAACCTGAGCAACATCGACAGCTCTGAGTCGGAGAGGAAGTGTGAGGTCGACCCCATGTTCCAGCGCATGGCGTCGTCCTTCGATGAGAGCAGCACAGCAGGCGTATTCCTGTCGGTGCTGTTCAGTGAAGACAGTAGCTGTGAGCTGCTCTTCCCCTCCCACATGACCCTGCTGCACTCCACTCACTCCTGCTCCCAGTCTCCTCCGCAGCACGTCCCTTCGCTGCCCTTCACAGGTGGTCTCCAGCAGACCCAGGAGAAGAGCTCCATCTGCCCCTCCCTGGCAGACTTCTCTTTCACCAGCTGGAACCCTGACCAGACCATGACCCAGATGCTGGAGAAGATGAAGCAGGGGGATCACGTGTTTGACCGGAACGCGGAGCCGGATGAGGAGGAGTGTCAGGATTTTGGGGATAATTTTGATGGAGACTATGAGGAGGGTCAGGGGGATTATGGTGGAGAGGGCTCCAAAGAACACAAAGATGGCTGTAAGGCTGGAGGGCCGGGGAGAGGAAGGGATGTGATTCCCATTGGAGAGGGGGACATAGCCACCATGTGTCTGCAGCTGTCCAACCAGCCCAGAGAGTACTCCTACTTCAGCCCTAGGACCATGGCTACCTGGGCAGGTCCTGGCTACTGGCGCTTCAAACCTCTGCACAAGAaggacaACATGCCTGAGAAGGAGGGTCCCAAGAGGAAGTCTAAGAATGCCTTTGCAATTGACTTTAACGACCATGTCAACTTTGAAACCTACTTCTGCACCACTAGAGCTGCTACCACTATCATCAAGTCCGCCCTCAGTACCAGCAACAAGAAAACCACTCTAGCTGCAGACTTCCAGTTCCCCCTTAAGACCCTGTCCCAACTCAGCCTCAAACCTGCCAGCACATTGTGTAAAGAGGGCCAGAAGAGGTTGTCTGGAGAGCTGGAAGGCATCGGAGACTACGACTACAACAACGCCAACGACACAGCCAACTTCTGCCCTGGCCTGCAGGGTGGGGACAGTGATGATGGTGAAGGTTTCAGTAGAGGTGCAGATGACACCCAGCCTTCCGCAGACAGTAACCTCGCCTCCTCACAAGACCATGACGACGTGTCCACCTATGGGGAGGACGATCTGGTGCCAGAACCACACCGGGTGAACAAGATTGAGATAAACTATGCCAAAACAGCCAAGAAGATGGACATGAAGAGGCTCAAGAACATCATGTGGAATCTTCTGACTGGCAGTCTGGAAAAAACAGCCAAGCAGGAGGTGGAGAATGCTGAGACTTCAGTGGTGTCTGGGGAGAAAGTCTTCAGTCAGACCACAAAGACTCTGCTTCAAAGCCTGCCCCCCACCATGGCTCAGAACCTGTCTGTGCCCCTGGCGTTCGTCGCCCTGCTGCACTTGGCCAATGAGAAGAATTTGGAGCTCGTGAAGGTGGACGACATGTCAGATATCCTCATCAAGCAAGGTCAATGAAAAGGGCTAAACTATGGGATTTAAACAGAGACTTGTTTCCTTTTCTCCTCAAACTGCTTATTCTCACTTTTTCTTGGTATATGATGAATTCCCGGCCATTCGTGTCAAAGTTGCCATCACATTTAGGTGAAATGTTATTTCTAGGAAATGTATAGTAAGTGTCCCTTAAAAATGACTAATCTGTTTATTACCTGAATAGTGTTTTTAACATATTTACCTGTACATTCAGTAGAACCTGTCCTTTTTTTTGTTCTACATCTATTGTGTGTAAATAactgtggaggctgctgaggggagagtggctcataataatgtctggaatggtatcaaacacatgaaaaccatgtgcttgataccattccattccagacatttattatgagtcgtcctcccctcaggagcctccactggtaaaTAATATAAATGCTTCACTCCTGCCTCCCTCAAGACTGTGTAATGTGTACAtaccaaaaataaataaaagtttgtTTTTCTACATTA
>XM_021621957.2
TGGCCGGAGCTACCTCAATGGGGCGGGGTCGATTCAACATGGTAATGCCCACTGTCGTTACGTAAACCCTTCGGCGCACATGTTCAAATCTGATCAGGAACAAAAGTGCATTTGTGCAAAATACGCTTTGTTTTCATTTTAATGTAGCTATATATAAAGAAGCTGGAAATAATCGAGgcaGTCACGATGAGCTCATCGTCCTCACCCCTTTCCCGGGTGCGTCAGTGGGCCTCACCGTCCCTGAAGCACAGGGGCGCCTCTCCTGTCGCGAGCAGCACCCCGCTCTTCGCATCTTTCGAGGGAAACAATGATGAGCTAGAGCGTCGTCAGAGGCGCAGGTCCCGGGTCATTGGCCTGCAAGCTGCCGCTGACTCCTCATTTAATGAATCTACCTCTCATAGCACCAAGGGGACCCCTGCTGCTGTGCCCAAACTGTCAAATGCACAGATCTCAGAGCATTACTCCACCTGCATCAAGCTCTCCACTGAAAATAAAATTACCACCAAAAATGCCTTTGGTCTCCACCTGATTGACTACATGGCTGACATCCTCAAACAGAAGGATTCTGAGCTCACAAATTTCAAGGTGGCAGCGGGTACCTTGGACGCCAGCACCAAGATTTACGCAGTCCGAGTGGATGCTGTCCATGCTGATGCCTACAGAGTACTGGGAGGACTGGGTGCTGAGACCAAGCCTGGGGAAGcaggagatgggggagagatggcgGAGGGTGCTGCAGGAGAGCTGGCTGCCAAGCAGgtggtgaagaagaagaagaggcctCCCAAAAAGACTGTGGAGCAGAACCTGAGCAACATCGACAGCTCTGAGTCGGAGAGGAAGTGTGAGGTCGACCCCATGTTCCAGCGCATGGCGTCGTCCTTCGATGAGAGCAGCACAGCAGGCGTATTCCTGTCGGTGCTGTTCAGTGAAGACAGTAGCTGTGAGCTGCTCTTCCCCTCCCACATGACCCTGCTGCACTCCACTCACTCCTGCTCCCAGTCTCCTCCGCAGCACGTCCCTTCGCTGCCCTTCACAGGTGGTCTCCAGCAGACCCAGGAGAAGAGCTCCATCTGCCCCTCCCTGGCAGACTTCTCTTTCACCAGCTGGAACCCTGACCAGACCATGACCCAGATGCTGGAGAAGATGAAGCAGGGGGATCACGTGTTTGACCGGAACGCGGAGCCGGATGAGGAGGAGTGTCAGGATTTTGGGGATAATTTTGATGGAGACTATGAGGAGGGTCAGGGGGATTATGGTGGAGAGGGCTCCAAAGAACACAAAGATGGCTGTAAGGCTGGAGGGCCGGGGAGAGGAAGGGATGTGATTCCCATTGGAGAGGGGGACATAGCCACCATGTGTCTGCAGCTGTCCAACCAGCCCAGAGAGTACTCCTACTTCAGCCCTAGGACCATGGCTACCTGGGCAGGTCCTGGCTACTGGCGCTTCAAACCTCTGCACAAGAaggacaACATGCCTGAGAAGGAGGGTCCCAAGAGGAAGTCTAAGAATGCCTTTGCAATTGACTTTAACGACCATGTCAACTTTGAAACCTACTTCTGCACCACTAGAGCTGCTACCACTATCATCAAGTCCGCCCTCAGTACCAGCAACAAGAAAACCACTCTAGCTGCAGACTTCCAGTTCCCCCTTAAGACCCTGTCCCAACTCAGCCTCAAACCTGCCAGCACATTGTGTAAAGAGGGCCAGAAGAGGTTGTCTGGAGAGCTGGAAGGCATCGGAGACTACGACTACAACAACGCCAACGACACAGCCAACTTCTGCCCTGGCCTGCAGGGTGGGGACAGTGATGATGGTGAAGGTTTCAGTAGAGGTGCAGATGACACCCAGCCTTCCGCAGACAGTAACCTCGCCTCCTCACAAGACCATGACGACGTGTCCACCTATGGGGAGGACGATCTGGTGCCAGAACCACACCGGGTGAACAAGATTGAGATAAACTATGCCAAAACAGCCAAGAAGATGGACATGAAGAGGCTCAAGAACATCATGTGGAATCTTCTGACTGGCAGTCTGGAAAAAACAGCCAAGCAGGAGGTGGAGAATGCTGAGACTTCAGTGGTGTCTGGGGAGAAAGTCTTCAGTCAGACCACAAAGACTCTGCTTCAAAGCCTGCCCCCCACCATGGCTCAGAACCTGTCTGTGCCCCTGGCGTTCGTCGCCCTGCTGCACTTGGCCAATGAGAAGAATTTGGAGCTCGTGAAGGTGGACGACATGTCAGATATCCTCATCAAGCAAGGTCAATGAAAAGGGCTAAACTATGGGATTTAAACAGAGACTTGTTTCCTTTTCTCCTCAAACTGCTTATTCTCACTTTTTCTTGGTATATGATGAATTCCCGGCCATTCGTGTCAAAGTTGCCATCACATTTAGGTGAAATGTTATTTCTAGGAAATGTATAGTAAGTGTCCCTTAAAAATGACTAATCTGTTTATTACCTGAATAGTGTTTTTAACATATTTACCTGTACATTCAGTAGAACCTGTCCTTTTTTTTGTTCTACATCTATTGTGTGTAAATAactgtggaggctgctgaggggagagtggctcataataatgtctggaatggtatcaaacacatgaaaaccatgtgcttgataccattccattccagacatttattatgagtcgtcctcccctcaggagcctccactggtaaaTAATATAAATGCTTCACTCCTGCCTCCCTCAAGACTGTGTAATGTGTACAtaccaaaaataaataaaagtttgtTTTTCTACATTA

Function

NR:

description
condensin complex subunit 2-like isoform X1

GO: NA

KEGG:

id description
K06676 BRRN1, BRN1, CAPH; condensin complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936165.1 False 2589 mRNA 0.51 17 66597469 66624263
XM_021621959.2 False 2765 mRNA 0.51 18 66597469 66625840
XM_021621957.2 True 2769 mRNA 0.51 18 66597469 66625841

Neighbor

gene id symbol gene type direction distance location
LOC110536264 LOC106580511 coding downstream 1174 66591672 ~ 66596295 (-)
LOC110536263 LOC106580509 coding downstream 17834 66573376 ~ 66579635 (-)
rnf181 rnf181 coding downstream 25419 66565298 ~ 66572050 (-)
LOC110536260 LOC106580506 coding downstream 73373 66511861 ~ 66524096 (-)
trnag-ccc-3 NA coding downstream 85668 66511731 ~ 66511801 (-)
LOC110536266 LOC106580554 coding upstream 103389 66729230 ~ 66765764 (-)
LOC110536269 NA coding upstream 246766 66872269 ~ 66874782 (-)
LOC110536273 LOC106580518 coding upstream 366335 66992176 ~ 67012775 (-)
LOC110535096 zmat4 coding upstream 531189 67157030 ~ 67344175 (-)
LOC110536277 sfrp1 coding upstream 761895 67387736 ~ 67421927 (-)
G1007726 NA non-coding downstream 38266 66534132 ~ 66559203 (-)
G1007720 NA non-coding downstream 68106 66528837 ~ 66529363 (-)
G1007706 NA non-coding downstream 98293 66498892 ~ 66499176 (-)
G1007693 NA non-coding downstream 119362 66477840 ~ 66478107 (-)
G1007776 NA non-coding upstream 10515 66636356 ~ 66636850 (-)
G1007779 NA non-coding upstream 12905 66638746 ~ 66638960 (-)
G1007841 NA non-coding upstream 62450 66688291 ~ 66688885 (-)
G1007855 NA non-coding upstream 71755 66697596 ~ 66697901 (-)
G1007858 NA non-coding upstream 73276 66699117 ~ 66699354 (-)
G1007506 NA other downstream 224520 66372642 ~ 66372949 (-)
G1006106 NA other downstream 1497913 65098960 ~ 65099556 (-)
G1005628 LOC106580457 other downstream 2233692 64360764 ~ 64363777 (-)
G1004487 NA other downstream 2795467 63801529 ~ 63802002 (-)
LOC110536206 LOC106580443 other downstream 3851221 62740236 ~ 62804200 (-)
G1009720 NA other upstream 1345230 67971071 ~ 67971328 (-)
G1010443 NA other upstream 2061416 68687257 ~ 68687962 (-)
G1010922 NA other upstream 2490666 69116507 ~ 69119486 (-)
G1011014 NA other upstream 2679495 69305336 ~ 69306428 (-)
G1012814 NA other upstream 4258635 70884476 ~ 70890991 (-)

Expression


Co-expression Network