LOC110536266 (LOC106580554)


Basic Information

Item Value
gene id LOC110536266
gene name LOC106580554
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 66729230 ~ 66765764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621960.2
ATGTTGTCAGAATGTGTGGCCTATGTTAGCTGATTGAAAATAGTGGGGTAGAGCCTATAATGAAGTACACTCAGTTTATATACATCACCCATTCACTATAGGTATCCCCATATCCTACAGTAGCAATATGTATTTGTCGGCTACATATCTCTCAATTGTCTAAATTTAGACATTTAAGAATTTGCTAAACTATGCTGGGCTCGTTGAACAAGTTGTCCAGTCCATGAACGTTTCCCGTTACCAtatacaattgttggaaatatctGATATTTGCGTACGCGTGCtaagtatgagagagagagagagagagagagagagagagagagagagagagagagagagagagagcgcgcgcacCTCAATGAGCCAAGAGTATAGGGTACGGAGTAGAGCGCTGGAGAGTGGAGTCAAGTCTAGGAACAGCTTCTTTCACGCCCTGTGTCTTTTTGCTGCGGTGGAGAAGAGGTGCTCATTTGAACGCCATGTACCAGAGAACACCTACATTTTACGCGGAGTGAAGTCAATTTAAATACACATACATTTTCTTATCCAAATTACATTTTTAATAACTGCGGGTTATTCTAAATGTTCTCTGTGTGAGCTGCTTTTCAGTGATCATTGCATCATGTTACCAGTCTAATTTAGGGGTGCCAAATTCGTCAGGATGGCAATGACGAAGAAAGTTTAAATTGAAAGACATCAGTATTCTCCAAGATGATTTCTTACCATTTATTCAATCAGTAACTGGTTGATTATTAATGTACATTTCATAGGTGTTGCATGGACTAATTATATTATTGTCAACAGCAGAACACCAAAAAAATGGATCCCTTGTTCACCACAACTGATTTAAAATTGCCAAGCAATTGGACCAACTCTTCAGGGGTCAATGGAACTGATCAGGACTGGAACCAGTTTGTGCAACCCGTTTGGAGAATTGTGCTATGGGCATTCGCCTACAGTTGCATGGTTACTGTGTCTCTGGTGGGGAACGTCGTGGTAATTTGGATCATTATGGCGCATAAACGAATGCGAACTGTGACCAACTATTTTCTGTTGAACCTCGCGTTTGCTGAAGCGTCTATGTCTGCCTTCAACACCGTTATCAACTTCATCTATTCCGTGCACAACGAGTGGTACTTCGGGCTGATGTACTGTCGCTTTCACAACTTCTTCCCCGTCGCTGCTGTCTTCGCTAGTATATACTCTATGACTGCGATAGCGGTGGACAGgtACACTGCCATCATCCATCCCCTGCAGCAACGGATGTCATCCACAGAGACCAAGGTGATCGTGGGGGTGATCTGGGTGCTGGCTCTGCTTCTGGCCTTCCCTCAATACTACTACTCAGTGACCGAGGAGCTCCCTGGACGAATCATCTGTTACATCGAGTGGCCCGAATACACCGGCTGTGACTACAAAATTCTGTACTACGTATGTGTGACTGTGCTGATCTACTTCCTGCCTCTGCTGGTGATGGGCTGTGCCTACCTGGTGGTGGGCCTCACCCTCTGGGCCAGTAACATACCTGGAGACTCCTCTGACCGCTACAAGGAGCAGCTCACTGCCAAACgcaaggtgGTGAAGATGATGATCGTGGTGGTGTGTACGTTTTCTCTCTGCTGGCTGCCCTACCACGTGTACTTCCTGCTCCACCTGTTCTTCCCCCTCCTGTTTGAGACGCTCTACATCCAACAGGTGTACCTGGCTGTCATGTGGCTGGCCATGAGCTCCACCATGTACAACCCTATCATCTACTGCTGTCTCAACGACAGGTTCCGAGCTGGCTTCAAGCAGGCCTTCAGCTGCTGTCCCTGTGTCCCCACCGGCTCCTACGAGGGTCTGGAGCTCAAGTCCACACGTTACCTGCAGACCCAGGCCAGCATGTACAAGGCCAGCCGCATGGAGACCAACGTGTCCTCCGTGCTGCATGTGGCCGACGACCTGGAGCCTCCCAGGTTTGGGGCCGTATCTGTGGCCGGGTGTGGGTCCGAGGCGCAGGGGGTTagcggagggggaggggggttgtgTGCAGTAGCGGCACCCAGGTGCTCCTCTCTGGACCTGACCTCTAACGGCTCCTCGTCCCGCAGTGTCTCCAAGAATGTGTCGGAGACCTCCAGCTTCTACTCTAGCAACAACCTGcctgagtagagaggggagaggagaatcaGGCACCGCTAAATC

Function

NR:

description
substance-P receptor-like

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004995 tachykinin receptor activity molecular_function

KEGG:

id description
K04222 TACR1; tachykinin receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621960.2 True 2187 mRNA 0.49 5 66729230 66765764

Neighbor

gene id symbol gene type direction distance location
LOC110536265 LOC106580510 coding downstream 103389 66597469 ~ 66625841 (-)
LOC110536264 LOC106580511 coding downstream 132935 66591672 ~ 66596295 (-)
LOC110536263 LOC106580509 coding downstream 149595 66573376 ~ 66579635 (-)
rnf181 rnf181 coding downstream 157180 66565298 ~ 66572050 (-)
LOC110536260 LOC106580506 coding downstream 205134 66511861 ~ 66524096 (-)
LOC110536269 NA coding upstream 106843 66872269 ~ 66874782 (-)
LOC110536273 LOC106580518 coding upstream 226412 66992176 ~ 67012775 (-)
LOC110535096 zmat4 coding upstream 391266 67157030 ~ 67344175 (-)
LOC110536277 sfrp1 coding upstream 621972 67387736 ~ 67421927 (-)
LOC110536278 LOC106580522 coding upstream 716063 67481827 ~ 67534356 (-)
G1007918 NA non-coding downstream 248 66727698 ~ 66728982 (-)
G1007916 NA non-coding downstream 4978 66720929 ~ 66724252 (-)
G1007883 NA non-coding downstream 10005 66718926 ~ 66719225 (-)
G1007882 NA non-coding downstream 10543 66718380 ~ 66718687 (-)
G1007858 NA non-coding downstream 29876 66699117 ~ 66699354 (-)
G1008426 NA non-coding upstream 104806 66870570 ~ 66871547 (-)
G1008432 NA non-coding upstream 117213 66882977 ~ 66883447 (-)
G1008433 NA non-coding upstream 118062 66883826 ~ 66884133 (-)
G1008456 vp37b non-coding upstream 150336 66916100 ~ 66936064 (-)
G1007506 NA other downstream 356281 66372642 ~ 66372949 (-)
G1006106 NA other downstream 1629674 65098960 ~ 65099556 (-)
G1005628 LOC106580457 other downstream 2365453 64360764 ~ 64363777 (-)
G1004487 NA other downstream 2927228 63801529 ~ 63802002 (-)
LOC110536206 LOC106580443 other downstream 3982982 62740236 ~ 62804200 (-)
G1009720 NA other upstream 1205307 67971071 ~ 67971328 (-)
G1010443 NA other upstream 1921493 68687257 ~ 68687962 (-)
G1010922 NA other upstream 2350743 69116507 ~ 69119486 (-)
G1011014 NA other upstream 2539572 69305336 ~ 69306428 (-)
G1012814 NA other upstream 4118712 70884476 ~ 70890991 (-)

Expression


Co-expression Network