LOC110536269


Basic Information

Item Value
gene id LOC110536269
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 66872269 ~ 66874782 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475392.2
ACAAACAACTCAAAATCCGGAAGCAATACCATAACTGCTTTTGACAGCTCCTCGTTCACTCTCATTTAACTACTAACAATAGTTTTTTATTATGGATTTTACTATAACTTTGATACGTTTATGTGTATTATCTTCATAGGATAATCATGCAAAACTGTAAGGATCGTAATGCAAATGTTTACACTAGTTGTTTTAGCGCTAAATATTTTCCTTGAGTTCAAACGTCATGTCAGATCAGCAGCAGTTAGAACCTATTATCAAGCGATTGCCAGATAAGTTTAATGGCGTCAGAGCCTTGGCGTGAAGTCAGCTGAGAGCTGCTGCCATAAGGGAGATTTATAAACCCCTCCATGACCATGTCTACCATCTACAGcttctGTGATGAGATGGAACATTTTGAACAGTGTACAGACCCAACATAATGAACTACAGGATCCTCCTGAACGAGCTAGGATTTGACAATGGCTTTACCACCCCTCTCCGTGTGCAGTATCTGTAGCCTCTCACATCTCTGCTCTACCCTAAATACGCTGCCTACACAGCCACAAGGCCTTCATGGTGAAATATGACATTCATGAAGACCTGGACCTCGTCTACCATTACGACAACGCAGAGGTCACTCAATGTGTCTCTGGGGAACCTCTACTTTGGTGACATGAAACAGGTGCCTCTGAGTGAGAGTGTCTACAGAGGTAGAGCAGGGAATGATAGAGGGTCTCCTATACAGAGGACAACACATGCACGGTTCCCTGCCCATCTCCTCTGGCCAGTGCTGGAACCTCATTGTCTGGATGAGGGCCTCACAGGAGAGGACAAAACTGTGCCCCATGTGCAAAAATAAGCCTACCTTGGTCGAGGGACAGGGCTTCACAGATGGCTTCACCAGTGACTCAGGGATGTCTCTTCTACAGGATGTATCATGCGTTCTGCGTTAACTTAATGCTGCTGGTCCATATGTTTTTGTGTATGTTAGTATGATTTGTGTCTGGATGTCTGCTTATCGTGGACATTATCGCATGTGCCAAAAAAGAGTTATAGAGAGGAAACGTGGTAGACATTAGGAACATTATTTCTACATAACACTGCACTACATACTTCATTACGCAGTGTCACATTTATTCCAATCTTTTCTAAATGATCATGTCCATAAAAAATATGTGTAGCCTGT
>XR_005034723.1
ACAAACAACTCAAAATCCGGAAGCAATACCATAACTGCTTTTGACAGCTCCTCGTTCACTCTCATTTAACTACTAACAATAGTTTTTTATTATGGATTTTACTATAACTTTGATACGTTTATGTGTATTATCTTCATAGGATAATCATGCAAAACTGTAAGGATCGTAATGCAAATGTTTACACTAGTTGTTTTAGCGCTAAATATTTTCCTTGAGTTCAAACGTCATGTCAGATCAGCAGCAGTTAGAACCTATTATCAAGCGATTGCCAGATAAGTTTAATGGCGTCAGAGCCTTGGCGTGAAGTCAGCTGAGAGCTGCTGCCATAAGGGAGATTTATAAACCCCTCCATGACCATGTCTACCATCTACAGcttctGTGATGAGATGGAACATTTTGAACAGTGTACAGACCCAACATAATGAACTACAGGATCCTCCTGAACGAGCTAGGATTTGACAATGGCTTTACCACCCCTCTCCGTGTGCAGTATCTGTAGCCTCTCACATCTCTGCTCTACCCTAAATACGCTGCCTACACAGCCACAAGGCCTTCATGGTGAAATATGACATTCATGAAGACCTGGACCTCGTCTACCATTACGACAACGCAGAGGTCACTCAATGTGTCTCTGGGGAACCTCTACTTTGGTGACATGAAACAGGTGCCTAATCAGAGCCAATTTGGTGCCTCTGAGTGAGAGTGTCTACAGAGGTAGAGCAGGGAATGATAGAGGGTCTCCTATACAGAGGACAACACATGCACGGTTCCCTGCCCATCTCCTCTGGCCAGTGCTGGAACCTCATTGTCTGGATGAGGGCCTCACAGGAGAGGACAAAACTGTGCCCCATGTGCAAAAATAAGCCTACCTTGGTCGAGGGACAGGGCTTCACAGATGGCTTCACCAGTGACTCAGGGATGTCTCTTCTACAGGATGTATCATGCGTTCTGCGTTAACTTAATGCTGCTGGTCCATATGTTTTTGTGTATGTTAGTATGATTTGTGTCTGGATGTCTGCTTATCGTGGACATTATCGCATGTGCCAAAAAAGAGTTATAGAGAGGAAACGTGGTAGACATTAGGAACATTATTTCTACATAACACTGCACTACATACTTCATTACGCAGTGTCACATTTATTCCAATCTTTTCTAAATGATCATGTCCATAAAAAATATGTGTAGCCTGT
>TU1147179
CAAAATCCGGAAGCAATACCATAACTGCTTTTGACAGCTCCTCGTTCACTCTCATTTAACTACTAACAATAGTTTTTTATTATGGATTTTACTATAACTTTGATACGTTTATGTGTATTATCTTCATAGGATAATCATGCAAAACTGTAAGGATCGTAATGCAAATGTTTACACTAGTTGTTTTAGCGCTAAATATTTTCCTTGAGTTCAAACGTCATGTCAGATCAGCAGCAGTTAGAACCTATTATCAAGCGGTGGGTATCTACTAGCTAGCCAGTACAGTAGATCTACAAATAATTGTCATGTTAAAACATCTTGTTGGATAAATGTACTAGTTtgcgagctaacgttagctagttaactagaAACCAAAAATGGTTTGCCAAACAGGTGTTAAGAAAGCTTGGCTGCTCCACTGACACACAGTTCGAGGATATCCTGACAAAGATTGCCAGATAAGTTTAATGGCGTCAGAGCCTTGGCGTGAAGTCAGCTGAGAGCTGCTGCCATAAGGGAGATTTATAAACCCCTCCATGACCATGTCTACCATCTACAGcttctGTGATGAGATGGAACATTTTGAACAGTGTACAGACCCAACATAATGAACTACAGGATCCTCCTGAACGAGCTAGGATTTGACAATGGCTTTACCACCCCTCTCCGTGTGCAGTATCTGTAGCCTCTCACATCTCTGCTCTACCCTAAATACGCTGCCTACACAGCCACAAGGCCTTCATGGTGAAATATGACATTCATGAAGACCTGGACCTCGTCTACCATTACGACAACGCAGAGGTCACTCAATGTGTCTCTGGGGAACCTCTACTTTGGTGACATGAAACAGGTGCCTCTGAGTGAGAGTGTCTACAGAGGTAGAGCAGGGAATGATAGAGGGTCTCCTATACAGAGGACAACACATGCACGGTTCCCTGCCCATCTCCTCTGGCCAGTGCTGGAACCTCATTGTCTGGATGAGGGCCTCACAGGAGAGGACAAAACTGTGCCCCATGTGCAAAAATAAGCCTACCTTGGTCGAGGGACAGGGCTTCACAGATGGCTTCACCAGTGACTCAGGGATGTCTCTTCTACAGGATGTATCATGCGTTCTGCGTTAACTTAATGCTGCTGGTCCATATGTTTTTGTGTATGTTAGTATGATTTGTGTCTGGATGTCTGCTTATCGTGGACATTATCGCATGTGCCAAAAAAGAGTTATAGAGAGGAAACGTGGTAGACATTAGGAACATTATTTCTACATAACACTGCACTACATACTTCATTACGCAGTGTCACATTTATTCCAATCTTTTCTAAATGATCATGTCCATAAAAAATATGTGTAGCCTGTGAATTGAATGGTCTTTTGTCCAGGTAGGGATATTACATATCCAAAAGTCAATAGACACTAGTGAAGAAAACCTGAGCGTTCACATTTGTACCTTACTTTTAGTGGGGTTGCTTCTTGTTCACAGAAATTGGGAAATATTTGAAATGCTGTAAACTTTATACATAATGTAAGTAATATAAATAAATTCATAGCTGTAGTTCTTTTAGTACGTCAGTAATATATTTTTAGAAAACAATAATGCACAGGCATTTCTCTGTATTGGTAAAAATCAATAATATTGGAAAGATCAACAACACATTTACACACCAAATATCTCAAGAATACAGTTCGTACATAGT
>TU1147180
CAAAATCCGGAAGCAATACCATAACTGCTTTTGACAGCTCCTCGTTCACTCTCATTTAACTACTAACAATAGTTTTTTATTATGGATTTTACTATAACTTTGATACGTTTATGTGTATTATCTTCATAGGATAATCATGCAAAACTGTAAGGATCGTAATGCAAATGTTTACACTAGTTGTTTTAGCGCTAAATATTTTCCTTGAGTTCAAACGTCATGTCAGATCAGCAGCAGTTAGAACCTATTATCAAGCGGTGGGTATCTACTAGCTAGCCAGTACAGTAGATCTACAAATAATTGTCATGTTAAAACATCTTGTTGGATAAATGTACTAGTTtgcgagctaacgttagctagttaactagaAACCAAAAATGGTTTGCCAAACAGGTGTTAAGAAAGCTTGGCTGCTCCACTGACACACAGTTCGAGGATATCCTGACAAAGCCAAGTAGGCCTACGCATTTTGAGTATTTATTAAAATTGTACTGAATGATTAGTCTCGAAAACCGGAGCGTTTGAAATTGTGGAAGGCAACGCGGATGTCTAGACACTACTGAATGATCTTTCCATTTTGATGTGTGGTTAAATGTTTCCTTTCTAGATTGCCAGATAAGTTTAATGGCGTCAGAGCCTTGGCGTGAAGTCAGCTGAGAGCTGCTGCCATAAGGGAGATTTATAAACCCCTCCATGACCATGTCTACCATCTACAGcttctGTGATGAGATGGAACATTTTGAACAGTGTACAGACCCAACATAATGAACTACAGGATCCTCCTGAACGAGCTAGGATTTGACAATGGCTTTACCACCCCTCTCCGTGTGCAGTATCTGTAGCCTCTCACATCTCTGCTCTACCCTAAATACGCTGCCTACACAGCCACAAGGCCTTCATGGTGAAATATGACATTCATGAAGACCTGGACCTCGTCTACCATTACGACAACGCAGAGGTCACTCAATGTGTCTCTGGGGAACCTCTACTTTGGTGACATGAAACAGGTGCCTAATCAGAGCCAATTTGGTGCCTCTGAGTGAGAGTGTCTACAGAGGTAGAGCAGGGAATGATAGAGGGTCTCCTATACAGAGGACAACACATGCACGGTTCCCTGCCCATCTCCTCTGGCCAGTGCTGGAACCTCATTGTCTGGATGAGGGCCTCACAGGAGAGGACAAAACTGTGCCCCATGTGCAAAAATAAGCCTACCTTGGTCGAGGGACAGGGCTTCACAGATGGCTTCACCAGTGACTCAGGGATGTCTCTTCTACAGGATGTATCATGCGTTCTGCGTTAACTTAATGCTGCTGGTCCATATGTTTTTGTGTATGTTAGTATGATTTGTGTCTGGATGTCTGCTTATCGTGGACATTATCGCATGTGCCAAAAAAGAGTTATAGAGAGGAAACGTGGTAGACATTAGGAACATTATTTCTACATAACACTGCACTACATACTTCATTACGCAGTGTCACATTTATTCCAATCTTTTCTAAATGATCATGTCCATAAAAAATATGTGTAGCCTGTGAATTGAATGGTCTTTTGTCCAGGTAGGGATATTACATATCCAAAAGTCAATAGACACTAGTGAAGAAAACCTGAGCGTTCACATTTGTACCTTACTTTTAGTGGGGTTGCTTCTTGTTCACAGAAATTGGGAAATATTTGAAATGCTGTAAACTTTATACATAATGTAAGTAATATAAATAAATTCATAGCTGTAGTTCTTTTAGTACGTCAGTAATATATTTTTAGAAAACAATAATGCACAGGCATTTCTCTGTATTGGTAAAAATCAATAATATTGGAAAGATCAACAACACATTTACACACCAAATATCTCAAGAATACAGTTCGTACATAGT
>TU1147181
CAAAATCCGGAAGCAATACCATAACTGCTTTTGACAGCTCCTCGTTCACTCTCATTTAACTACTAACAATAGTTTTTTATTATGGATTTTACTATAACTTTGATACGTTTATGTGTATTATCTTCATAGGATAATCATGCAAAACTGTAAGGATCGTAATGCAAATGTTTACACTAGTTGTTTTAGCGCTAAATATTTTCCTTGAGTTCAAACGTCATGTCAGATCAGCAGCAGTTAGAACCTATTATCAAGCGATTGCCAGATAAGTTTAATGGCGTCAGAGCCTTGGCGTGAAGTCAGCTGAGAGCTGCTGCCATAAGGGAGATTTATAAACCCCTCCATGACCATGTCTACCATCTACAGcttctGTGATGAGATGGAACATTTTGAACAGTGTACAGACCCAACATAATGAACTACAGGATCCTCCTGAACGAGCTAGGATTTGACAATGGCTTTACCACCCCTCTCCGTGTGCAGTATCTGTAGCCTCTCACATCTCTGCTCTACCCTAAATACGCTGCCTACACAGCCACAAGGCCTTCATGGTGAAATATGACATTCATGAAGACCTGGACCTCGTCTACCATTACGACAACGCAGAGGTCACTCAATGTGTCTCTGGGGAACCTCTACTTTGGTGACATGAAACAGGTGCCTCTGAGTGAGAGTGTCTACAGAGGTAGAGCAGGGAATGATAGAGGGTCTCCTATACAGAGGACAACACATGCACGGTTCCCTGCCCATCTCCTCTGGCCAGTGCTGGAACCTCATTGTCTGGATGAGGGCCTCACAGGAGAGGACAAAACTGTGCCCCATGTGCAAAAATAAGCCTACCTTGGTCGAGGGACAGGGCTTCACAGATGGCTTCACCAGTGACTCAGGGATGTCTCTTCTACAGGATGTATCATGCGTTCTGCGTTAACTTAATGCTGCTGGTCCATATGTTTTTGTGTATGTTAGTATGATTTGTGTCTGGATGTCTGCTTATCGTGGACATTATCGCATGTGCCAAAAAAGAGTTATAGAGAGGAAACGTGGTAGACATTAGGAACATTATTTCTACATAACACTGCACTACATACTTCATTACGCAGTGTCACATTTATTCCAATCTTTTCTAAATGATCATGTCCATAAAAAATATGTGTAGCCTGTGAATTGAATGGTCTTTTGTCCAGGTAGGGATATTACATATCCAAAAGTCAATAGACACTAGTGAAGAAAACCTGAGCGTTCACATTTGTACCTTACTTTTAGTGGGGTTGCTTCTTGTTCACAGAAATTGGGAAATATTTGAAATGCTGTAAACTTTATACATAATGTAAGTAATATAAATAAATTCATAGCTGTAGTTCTTTTAGTACGTCAGTAATATATTTTTAGAAAACAATAATGCACAGGCATTTCTCTGTATTGGTAAAAATCAATAATATTGGAAAGATCAACAACACATTTACACACCAAATATCTCAAGAATACAGTTCGTACATAGT

Function

NR:

description
2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475392.2 False 1168 mRNA 0.43 5 66872607 66874782
XR_005034723.1 False 1190 mRNA 0.43 5 66872607 66874782
TU1147179 False 1689 lncRNA 0.40 5 66872269 66874772
TU1147180 False 1868 lncRNA 0.40 4 66872269 66874772
TU1147181 True 1496 lncRNA 0.40 5 66872269 66874772

Neighbor

gene id symbol gene type direction distance location
LOC110536266 LOC106580554 coding downstream 106843 66729230 ~ 66765764 (-)
LOC110536265 LOC106580510 coding downstream 246766 66597469 ~ 66625841 (-)
LOC110536264 LOC106580511 coding downstream 276312 66591672 ~ 66596295 (-)
LOC110536263 LOC106580509 coding downstream 292972 66573376 ~ 66579635 (-)
rnf181 rnf181 coding downstream 300557 66565298 ~ 66572050 (-)
LOC110536273 LOC106580518 coding upstream 117394 66992176 ~ 67012775 (-)
LOC110535096 zmat4 coding upstream 282248 67157030 ~ 67344175 (-)
LOC110536277 sfrp1 coding upstream 512954 67387736 ~ 67421927 (-)
LOC110536278 LOC106580522 coding upstream 607045 67481827 ~ 67534356 (-)
LOC110536279 LOC106580523 coding upstream 660893 67535675 ~ 67552685 (-)
G1008426 NA non-coding downstream 1060 66870570 ~ 66871547 (-)
G1007918 NA non-coding downstream 143625 66727698 ~ 66728982 (-)
G1007916 NA non-coding downstream 148355 66720929 ~ 66724252 (-)
G1007883 NA non-coding downstream 153382 66718926 ~ 66719225 (-)
G1007882 NA non-coding downstream 153920 66718380 ~ 66718687 (-)
G1008432 NA non-coding upstream 8195 66882977 ~ 66883447 (-)
G1008433 NA non-coding upstream 9044 66883826 ~ 66884133 (-)
G1008456 vp37b non-coding upstream 41318 66916100 ~ 66936064 (-)
G1008470 NA non-coding upstream 71708 66946490 ~ 66947153 (-)
G1008489 LOC108255714 non-coding upstream 99715 66974497 ~ 66975081 (-)
G1007506 NA other downstream 499658 66372642 ~ 66372949 (-)
G1006106 NA other downstream 1773051 65098960 ~ 65099556 (-)
G1005628 LOC106580457 other downstream 2508830 64360764 ~ 64363777 (-)
G1004487 NA other downstream 3070605 63801529 ~ 63802002 (-)
LOC110536206 LOC106580443 other downstream 4126359 62740236 ~ 62804200 (-)
G1009720 NA other upstream 1096289 67971071 ~ 67971328 (-)
G1010443 NA other upstream 1812475 68687257 ~ 68687962 (-)
G1010922 NA other upstream 2241725 69116507 ~ 69119486 (-)
G1011014 NA other upstream 2430554 69305336 ~ 69306428 (-)
G1012814 NA other upstream 4009694 70884476 ~ 70890991 (-)

Expression


Co-expression Network