LOC110536270 (LOC106580516)


Basic Information

Item Value
gene id LOC110536270
gene name LOC106580516
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 66896753 ~ 66915939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021621963.2
ATCTTGAGGGAGGAGCCTCTCACACCATAACTATTACCGGCTTCCGTAAACACTAAACAATAAGACATGAAACAAGAACGAGAGACGGGTCTGTCACctaaaatataataaatacattgCTGAAGCAAGGACAGCTGTTAAGTAATCGAATACCAGAGAGAAGACAAGCAACGGTAGGGAAATGTGATAAAGTAACGCAAGCCCTTGAAACCTGATGTCACGGGCGCATTAGTGATCACGGTCGGCATACACTTTGAGGTGATTTCAAAACTAGTCTGAAAAAAACCTTTATAATTGTAATACCCTATTCATTTCTTCTAATACCAGCTCTATTAAAACAAATATAAAAAGCTATAGTTTGAGTTTCACTGAAACTTGTTTCTCCCAAGATTTTATGACATTACACCACTGACAGACTGAAACAGAATGGGGGTCATGGTAGTGGTGAGCTGCATCTTGGTATTCATCCTGATGGATGTTATTGTCACCACTGTCATCTACTTACACGGATCCCAGACTGCAATATTCACAGAGGATGGGCAGAACTTTGACATTCTCCACTCCGTCCTGGACCTCTGGGGTACTGTGCTGGTCAGAGTCTGCCTTCTGCTGGGGGCCTCCATAGGCGTGTTATGGAACAGAGTGGACGGTCCACACAGGGTCTCTGCCCTGGGGACCCTGACTCTCCTCATCTGCCTGACCATCAGTACCTATGCCTTAGCCAAGCTGCTGATCCTGTCGGAGCAGGGCGATCTGGCTCACCAACCCTGGTTTCTTAGCCTGTTCTCCTGGACCTGTGTGTCAGCGCTGGGGACCGTGCTCCTCTGGAGGCTCCTGGGAAGGACACCCAACACTGttactgaaggagagggaggtggtggtggaggaggacatGGGGGCTCTGAAgagactgagaggctggtggAGACAGCTGGAGAGAATGGAACTGAAGAGGTGGAGGAGCAAGGACAGGGGCAtggggggaagaagaggaggagggctaGCAGGAAAGGGACACAGGACCAGACGGACTCAGGGGCCACAATGGGACGTCTGCTGTCCTACTGCAGTAAAGACGCTGTGCTGCTCTCGGTTgccgtcctcttcctcctcatctctgCTGTGTGTGAGGCCTTCATCCCCTACTACATTGGGCAGGCTATAGATGGCGTTGTTATTCACAAAAGTATGGAGTACTTTACCAAGCCCCTGATCACCCTTACGGTGTTGGCCTTAGCCAGCTCTATTGCCGTTGGAGTACGAGGTGGTCTCTTTAGTCTAACATTTGCCAGACTGAATCTTCGCCTGCGGAACCTTCTCTTCAGATCTCTGATGCGTCAGGAGATAGGCTTCTTTGACGCTAACCACACAGGTGACATCACCTCTCGCCTGTCCTCTGACACTACACAAGTGAGTGACTTGATCTCATTGAACATCAACATGTTCCTAAAGAGTATGGTGAAGGGCATAGGGTTTTTCATCTTCATGTTCGGGATTTCCTGGAAGCTGACTCTCGTCACCATCATGGGATTCCCCTTCATCGCAGTCATCTCCAAAGTCTATGGGGAGTACTACaagAGACTGACCAAAGAGGTTCAGACTGCCCTGGCTCAGGCTAACCAGGTGGCCGAGGAGACCATTTCAGGCATGAAGACGGTACGCAGCTTTGCCAATGAGGAACAGGAGGCTGATTCCTACTACGGCAGGCTACAGGTCATGTTTCAGCTGAACAAGAAGCAAGCGTTGGCCTATGCCCTCTACATGTGGTCCAGTTGTATCTCAGAGCTTGTTCTTGAAGTGGCTATCCTCTTCTATGGCGGTCACCTGGTCGTTACTGAGCAGATGAGTGGAGGGGGCCTGATATCATTCATCTTATATGAGCTGGAGCTAGGAGAGTGCCTGGAGAGCATAGCATCGGTCTACACGGGTCTCATGCAGGGAGTGGGAGCAGCTGAGAAGGTATTTGAGTACATGGACAGGGAGTCCAAACACCCACATGATGGGAAAGAGGTCCCTGATACCTGCAAAGGACTGGTCGAGTTTAAAGATGTCACGTTTTCCTACCCAACACGGCCCGAAACAGACATTCTAAAGAGTGTGTCCTTCACTTTGCGGCCTGGCGAGGTGACAGCCTTGGTGGGACCATCAGGCAGTGGGAAGAGCTCCTGTGTGGGGCTCCTAGAGAACTTCTACCCCCCACAACAAGGCCAGGTGCTGCTGGACGGCCGGCAGGTGCACACCTACCAGCATGACCTCCTCCACTCACAGGTAGCACTTGTGGGCCAGGAGCCTGTCCTGTTTGCCCGTTCTGTAGAGCAGAACATAACCTATGGCCTGACTGATATCCCTATGGAGGCTGTGGTGCAGGCAGCCACCAAGGCAAATGCACACGACTTCATCACCGGTCTAACCAATGGCTATGATACAGGAGTGGGTGAGAAGGGGACCCAGTTGTCAGGGGGACAGAAGCAACGGGTGGCCATCGCAAGGGCACTCATCCGCAACCCACATGTTCTGATCCTGGACGAGGCCACCAGTGCACTGGATGCAGAGAGCGAACATGTTgTCCAGCAGGCCCTGAACAACAAAATGCGTCAGCACACAGTGCTGGTGATCGCCCACCGCCTCAGCACAGTGGAAAAGGCAAACAACATCATAGTTATCAACCACGGCTGTGTGGTGGAGCAGGGGCCACACAACCAACTCATGGCCAAGGGGGGCCTGTACTGCAAGCTGGTGCAGAGGCAGGTCCTGGGCATCGAGACGGGGGCAGAGGTCCTCAACACCCCAGAGAAGCACTCCTGGAAGTCCGAGGGGGGTAGTCAGCGTAGTGGACCTGATAGCAGCAGTCCCAGTAAGTCTGAATGTGAAGCACCATGCTACTGAGAGAGCTTGGGATCCATCGGTAGctaacactgactgactgacaatcATGGACTAAGGAGTACACCATATCCAAGGAATTACATTACAGTACCCTAGATTCATTAAAGGccaataataataaaacatatatattgtgttttatatatattccCACGCTATGCGGTTGGAAtagtactgtgaaattgtgaaaatgatgataatgtccttttagtgtaagagctgtttggaaATACcttttttggtgggatggagttttggcctgattggtgaaatcaccaggcggtaaattagttaaagGTCAAACTCCACCCCTTTCTCAATTTTCTAtcaaaacagctgcattggacctttttaAGGGATTTAACGGTGTCCAAAACCATGAATAATGCATAATTATTGAATAATCAATAAGAGTATTGGGATTTGGTAGCCATTTGACCAGCTTTGATGGACTTGAATGAGCAACACTTTAATTTGTTTTCAATGTTATTTTTCATAGAGTCGATTATACAGTCTATGGTTATCACAGTGGTCTTCGTGttgaacatacatgtattttgagGTGGAGACAGCTCAAGCCAAAGTTAACATTGTTGATTGTATGACATACAAAAGAGTAATAGTATTGTGATACTTTATTGGCAATACTAGGTGGAAATGGTAAAGGCATCTCTGCTTACATGTCAACAACTAAGCCTCTCTCTGTTAATGGGTAAATGTGTACTGTTTACAGGACAGAGAGGTGCCTTCGCTGGAGACTTTATTTTTGAATTATTTGCAAATCAATGGGAAGTGCATTATCTTCAAACTATGACACTATCATTGCTGATTTTGAATAGATTACATTTTATGTTGATGCTGTCTGATTCTTTATTTTTCACAATTAAACATCAATTTACTGATTGAACTAAGATATGACTGTCATTCTGAACTAGGCTACTGAAAACATATTGGTTGTTGTTGCCTATTGGTTTTACTGTAGCAGAGATGGCTCTGACTGTAGTATATTTAGATCACAGCATttctaaacctaacactaatACTGTACTTTTTCTCTTATTTTTACAATTTCAAATTACAACACAACAAACAGGATATCACTACACTTATATTTTCTCTGGAGAAACTTATAATGACTACttttaataaaaatataaaaa

Function

NR:

description
ATP-binding cassette sub-family B member 9-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0035672 oligopeptide transmembrane transport biological_process
GO:0001916 positive regulation of T cell mediated cytotoxicity biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0042825 TAP complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0046978 TAP1 binding molecular_function
GO:0046979 TAP2 binding molecular_function
GO:0046980 tapasin binding molecular_function
GO:0042288 MHC class I protein binding molecular_function
GO:0042605 peptide antigen binding molecular_function
GO:0015421 ATPase-coupled oligopeptide transmembrane transporter activity molecular_function

KEGG:

id description
K05656 ABCB9, TAPL; ATP-binding cassette, subfamily B (MDR/TAP), member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021621963.2 True 4046 mRNA 0.47 11 66896753 66915939

Neighbor

gene id symbol gene type direction distance location
LOC110535095 LOC106580514 coding upstream 27879 66833977 ~ 66868874 (+)
LOC110536267 LOC106580513 coding upstream 98523 66774135 ~ 66798230 (+)
LOC110536261 LOC106585116 coding upstream 343305 66529178 ~ 66553448 (+)
LOC110536258 LOC106580503 coding upstream 566155 66299556 ~ 66330598 (+)
LOC118937395 LOC106580552 coding upstream 673324 66212053 ~ 66223429 (+)
LOC110536271 vp37b coding downstream 50 66915989 ~ 66944106 (+)
LOC110536272 LOC106580517 coding downstream 30517 66946456 ~ 66990399 (+)
LOC110536274 LOC106580519 coding downstream 130589 67046528 ~ 67047527 (+)
LOC110535097 LOC106580544 coding downstream 537696 67453635 ~ 67472779 (+)
LOC110536283 LOC106580527 coding downstream 1125114 68041053 ~ 68047964 (+)
G1007981 NA non-coding upstream 21995 66874062 ~ 66874758 (+)
G1007948 NA non-coding upstream 128534 66767992 ~ 66768219 (+)
G1007884 NA non-coding upstream 150021 66719770 ~ 66746732 (+)
G1007881 NA non-coding upstream 178139 66718337 ~ 66718614 (+)
G1007880 NA non-coding upstream 180208 66716186 ~ 66716545 (+)
G1008068 NA non-coding downstream 104578 67020517 ~ 67020717 (+)
G1008075 NA non-coding downstream 115424 67031363 ~ 67031595 (+)
G1008076 NA non-coding downstream 115694 67031633 ~ 67123650 (+)
G1008080 NA non-coding downstream 124192 67040131 ~ 67041719 (+)
G1008136 NA non-coding downstream 219896 67135835 ~ 67136357 (+)
G1008017 NA other upstream 14502 66881799 ~ 66882251 (+)
G1007556 NA other upstream 483818 66412574 ~ 66412935 (+)
G1007088 NA other upstream 879180 66009581 ~ 66017573 (+)
G1007008 NA other upstream 997385 65898748 ~ 65899368 (+)
LOC110536291 LOC106580540 other downstream 1668729 68584627 ~ 68587134 (+)
LOC110535101 LOC106580561 other downstream 1884261 68687221 ~ 68847333 (+)
LOC110536300 LOC106580593 other downstream 2482779 69398535 ~ 69400234 (+)
G1011336 NA other downstream 2717562 69633501 ~ 69633876 (+)
sb:cb288 NA other downstream 2789495 69705334 ~ 69711411 (+)

Expression


Co-expression Network