LOC110535096 (zmat4)


Basic Information

Item Value
gene id LOC110535096
gene name zmat4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 67157030 ~ 67344175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936175.1
CGCTGGAGAAAATCGTGTCGGAGCTCCGCACAGCTAGGCTACTATTGTCAAACGGCCAATGAGGTAAAAGCGGGGCGGAGAACAGTCGACGATTGTACTACGGGCAGTTGCCTACTGCAAACAGCTGTGGAAGCGTCTGCTTTTAACACGCGTTTCGTTGATCTGGTCAATGGATTACACAGTTTCCCTACAAGTGCAACATCAACTGGCTGTCTTCCCGACACACTTGTACCAGGGTTACAGTTTGGAGTTACAGaTGAAGTCTACAGAAGTGGACCAAGGGCTTTTCACAGACACCTACTGCAAAGTGTGCAGCGCTCAGCTCATTTCCGAGTCCCAGAGGATCGCCCACTACGAGAGTCGGAAACATGCCAATAAAGTACGACTGTATTACATGCTACATCCCGTGGATGGAGGCTGCCCAGCTAAGAAACTCAGAACAGACAATggAAGTGAGGAGGGAGACGTGGACAAGAACAAGTGCTGCACGCTGTGTAACATGTCCTTCACCTCAGCAGTGGTGGCACAGTCACATTACCAAGGCAAAATCCACGCGAAGAGACTAAAGCTGCTGCTGGGGGAGCAACCTGCCATCACAGCCAAAGAGGTGCCGCCCAGTCCGGTGAAAAGTTCCCTGGAAACTACCCCGGTGACCTCTCCTCGGCAGCGCAGGGACTCAGACCGCTACTGCCAGCTATGCAACGCCTGGTTCAACAACCCAGGCATGGCGCAGCAGCACTACGACGGCAAGAAGCACAATAAAAACGCAGCTCGCGCTGTCCTCCTGGAACAGCTGGGCAAGACCCTGGACATGGGAGAGATGAAAGGTCTGAAACGTAGCTATACGTGTGAAGTCTGCAATGTCACACTCAACTCTGTGGCACAGTACCATGCACATCTGCAGGGCTCAAAGCACCAAAACAACCTGAAGAATCAGATATGTGTCCAGTGAATCTTGAAGAACAAAATAAACCATTGGATTGATGTCAGACAAGCTGTGGTCAGCTTGCCCTGCTTTTTCTGCCTCtgctctgctttctctctctaccacacacacacacacgttctctctatgtctctctctcgctgtctctcttcctgtctctctccatggccCTGCTGGCATACAGTAGGAGAACAAGGGGTTTTGTAACGCTCCAACTCCACAGCATCTCTCGCACCTGTCAACGTAAAGCTTCTGCAGAACTCCTCTCATTTTGGCCGTGTGATCATCAACATTCCACACTAACAGATTTTCAGTATGTTTAAAAACAATGGTCCAACAGCATAAAAGTTGATCGGATAAAGGGACGGTTCCCTCAATGCATGATAAAATTAACAACCTGCAACTTCATGCTAACTATGCTTCTTGCTTTAGCTGTGTTAGAGAGAGGAATACTCTGTGGCATTTTGACTTGAGGAATACAGTTTTTTGTAGTTTCTTTACCTCTGAAACAGAAAATGTATAAGAGAACTTATATGTGGGTAATATATTGTTTTTAGATTTTATTTGAGTAATTTATTTAAACAATTGTATTTGGATTGCCATCAGAAtaaataaaacaatcagaatgtaTAACATTATAATAATGGTTTAATGATTGGGTCTACAGTATGCTACAGTGTGTATTACCATACAATCTTACAATAACATAATATCCCTGGTGGACATAAGGTTTTGTTGGCAATAATAATGACAGTTTAAGAAATGCCTTTGaacataatatatatttttaaatttttGGAATTTATCTTTCTGTGTCCCTAGCAGTCTTGGAAGGAGAATCTAGATAGGGATCTATGTTGTCAGTGTTCCAGGTCTCAACATGTGTTCTCTGTTCCTCCATGTGGTTTTGAGGTTCATATGTGGTCTTCGTCTCAGGGAGGTCCCATTGATTACTATTGTTCAGAATCAGGATTCAGATTCATGAACTGTTTTAAAATGTTACTACATTCGTGTTCACTGAATTCATTCCAAAAAAGCCTTTTAGAATGTGTAAGTAATACAGCCAATTACAGTAAATTTGAATCAAACCATGTTATTCTGTAATGGTGTGAAACATTGCtgttatgatgatgatgtcttATTCAGAGATGGAGAGTATTTAAAAAGCAATCCAACTTTAATATACAACCTTATTACAACATTCTGTAGCAACTCTTTCATTCTAGTATGTTATTCGAACATCAAAGCTACGTTATGACAGTGGTTCCTGTTGCCATAGCAGGTGTTTTAGTAGAAATGTCTATTTGTTCTTACTGTTGTGGACTAAACAGTTTATTGGTAATTGGGAAAGCAGATGCATCTTTATACAGATATAAGTTATTTATTTTCCTGTCAGTACAGTGCAGTCAGTGTCTGTCGACAGCAAAGATGTGTTTGATCAATAGCCTTGATAAAtgtgttaaaatgtatttttgtgcTAATTTATAAATAACTGATCTGTTTGTTTTGAAAGTACCATTGTCTAGAATTGTTACACCAGTTGAAACCAAGCCTTTTTAGATGTTTTGATAAGACTtcaactgtttttatttactgcttactcaacaacaacaaaacaccaaaGCATGTTCATGGGcattagagagatggagagagaaactcACAAACATACAACAAATCTTTCTGAACTGAACACCAACTGAAGAAAAACATACAACAAATCCTTCTGAACTCAACACCAACTGAAGCTGGCTCAACTGAGAGCCATCCGCCTTGTGAGATGCCACaggcaaaaaaaaataataataatgtacaaAGTGTTTTTACTATTACAAGCAACTTAAGATGTACTCTGTGCATGAATTATTTACTAATTAATGCTACTCTGCGATCCACTGAATTGCTTTGCTCAACCCAAGTCATAACGTTACATTCTGCCCAACTTTTGCGTTGGATCTAGTGTCTCTCCCTCGATCTCCAGAGGAATACCACATCTCATACACCCTACTCACTTTGTGCGCTCTCTGGGTTATGTACTATCCTGTGTCTGAAAAAGAATAAAAAGACACTTGCAACTATA
>XM_036936176.1
TATCGCTGGAGAAAATCGTGTCGGAGCTCCGCACAGCTAGGCTACTATTGTCAAACGGCCAATGAGGTAAAAGCGGGGCGGAGAACAGTCGACGATTGTACTACGGGCAGTTGCCTACTGCAAACAGCTGTGGAAGCGTCTGCTTTTAACACGCGTTTCGTTGATCTGGTCAATGGATTACACAGTTTCCCTACAAGTGCAACATCAACTGGCTGTCTTCCCGACACACTTGTACCAGGGTTACAGTTTGGAGTTACAGaTGAAGTCTACAGAAGTGGACCAAGGGCTTTTCACAGACACCTACTGCAAAGTGTGCAGCGCTCAGCTCATTTCCGAGTCCCAGAGGATCGCCCACTACGAGAGTCGGAAACATGCCAATAAAGTACGACTGTATTACATGCTACATCCCGTGGATGGAGGCTGCCCAGCTAAGAAACTCAGAACAGACAATggAAGTGAGGAGGGAGACGTGGACAAGAACAAGTGCTGCACGCTGTGTAACATGTCCTTCACCTCAGCAGTGGTGGCACAGTCACATTACCAAGGCAAAATCCACGCGAAGAGACTAAAGCTGCTGCTGGGGGAGCAACCTGCCATCACAGCCAAAGAGGTGCCGCCCAGTCCGGTGAAAAGTTCCCTGGAAACTACCCCGGTGACCTCTCCTCGGCAGCGCAGGGACTCAGACCGCTACTGCCAGCTATGCAACGCCTGGTTCAACAACCCAGGCATGGCGCAGCAGCACTACGACGGCAAGAAGCACAATAAAAACGCAGCTCGCGCTGTCCTCCTGGAACAGCTGGGCAAGACCCTGGACATGGGAGAGATGAAAGCCTGAAGAATCAGATATGTGTCCAGTGAATCTTGAAGAACAAAATAAACCATTGGATTGATGTCAGACAAGCTGTGGTCAGCTTGCCCTGCTTTTTCTGCCTCtgctctgctttctctctctaccacacacacacacacgttctctctatgtctctctctcgctgtctctcttcctgtctctctccatggccCTGCTGGCATACAGTAGGAGAACAAGGGGTTTTGTAACGCTCCAACTCCACAGCATCTCTCGCACCTGTCAACGTAAAGCTTCTGCAGAACTCCTCTCATTTTGGCCGTGTGATCATCAACATTCCACACTAACAGATTTTCAGTATGTTTAAAAACAATGGTCCAACAGCATAAAAGTTGATCGGATAAAGGGACGGTTCCCTCAATGCATGATAAAATTAACAACCTGCAACTTCATGCTAACTATGCTTCTTGCTTTAGCTGTGTTAGAGAGAGGAATACTCTGTGGCATTTTGACTTGAGGAATACAGTTTTTTGTAGTTTCTTTACCTCTGAAACAGAAAATGTATAAGAGAACTTATATGTGGGTAATATATTGTTTTTAGATTTTATTTGAGTAATTTATTTAAACAATTGTATTTGGATTGCCATCAGAAtaaataaaacaatcagaatgtaTAACATTATAATAATGGTTTAATGATTGGGTCTACAGTATGCTACAGTGTGTATTACCATACAATCTTACAATAACATAATATCCCTGGTGGACATAAGGTTTTGTTGGCAATAATAATGACAGTTTAAGAAATGCCTTTGaacataatatatatttttaaatttttGGAATTTATCTTTCTGTGTCCCTAGCAGTCTTGGAAGGAGAATCTAGATAGGGATCTATGTTGTCAGTGTTCCAGGTCTCAACATGTGTTCTCTGTTCCTCCATGTGGTTTTGAGGTTCATATGTGGTCTTCGTCTCAGGGAGGTCCCATTGATTACTATTGTTCAGAATCAGGATTCAGATTCATGAACTGTTTTAAAATGTTACTACATTCGTGTTCACTGAATTCATTCCAAAAAAGCCTTTTAGAATGTGTAAGTAATACAGCCAATTACAGTAAATTTGAATCAAACCATGTTATTCTGTAATGGTGTGAAACATTGCtgttatgatgatgatgtcttATTCAGAGATGGAGAGTATTTAAAAAGCAATCCAACTTTAATATACAACCTTATTACAACATTCTGTAGCAACTCTTTCATTCTAGTATGTTATTCGAACATCAAAGCTACGTTATGACAGTGGTTCCTGTTGCCATAGCAGGTGTTTTAGTAGAAATGTCTATTTGTTCTTACTGTTGTGGACTAAACAGTTTATTGGTAATTGGGAAAGCAGATGCATCTTTATACAGATATAAGTTATTTATTTTCCTGTCAGTACAGTGCAGTCAGTGTCTGTCGACAGCAAAGATGTGTTTGATCAATAGCCTTGATAAAtgtgttaaaatgtatttttgtgcTAATTTATAAATAACTGATCTGTTTGTTTTGAAAGTACCATTGTCTAGAATTGTTACACCAGTTGAAACCAAGCCTTTTTAGATGTTTTGATAAGACTtcaactgtttttatttactgcttactcaacaacaacaaaacaccaaaGCATGTTCATGGGcattagagagatggagagagaaactcACAAACATACAACAAATCTTTCTGAACTGAACACCAACTGAAGAAAAACATACAACAAATCCTTCTGAACTCAACACCAACTGAAGCTGGCTCAACTGAGAGCCATCCGCCTTGTGAGATGCCACaggcaaaaaaaaataataataatgtacaaAGTGTTTTTACTATTACAAGCAACTTAAGATGTACTCTGTGCATGAATTATTTACTAATTAATGCTACTCTGCGATCCACTGAATTGCTTTGCTCAACCCAAGTCATAACGTTACATTCTGCCCAACTTTTGCGTTGGATCTAGTGTCTCTCCCTCGATCTCCAGAGGAATACCACATCTCATACACCCTACTCACTTTGTGCGCTCTCTGGGTTATGTACTATCCTGTGTCTGAAAAAGAATAAAAAGACACTTGCAACTATA

Function

symbol description
zmat4 Enables identical protein binding activity. Predicted to be located in nucleus.

NR:

description
zinc finger matrin-type protein 4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936175.1 False 3026 mRNA 0.41 7 67157030 67344172
XM_036936176.1 True 2932 mRNA 0.41 6 67157030 67344175

Neighbor

gene id symbol gene type direction distance location
LOC110536273 LOC106580518 coding downstream 144255 66992176 ~ 67012775 (-)
LOC110536269 NA coding downstream 282248 66872269 ~ 66874782 (-)
LOC110536266 LOC106580554 coding downstream 391266 66729230 ~ 66765764 (-)
LOC110536265 LOC106580510 coding downstream 531189 66597469 ~ 66625841 (-)
LOC110536264 LOC106580511 coding downstream 560735 66591672 ~ 66596295 (-)
LOC110536277 sfrp1 coding upstream 43561 67387736 ~ 67421927 (-)
LOC110536278 LOC106580522 coding upstream 137652 67481827 ~ 67534356 (-)
LOC110536279 LOC106580523 coding upstream 191500 67535675 ~ 67552685 (-)
LOC110536280 LOC106580524 coding upstream 215259 67559434 ~ 67574486 (-)
LOC110536281 LOC106580525 coding upstream 237448 67581623 ~ 67800037 (-)
G1008509 NA non-coding downstream 129242 67027577 ~ 67027788 (-)
G1008508 NA non-coding downstream 129971 67026692 ~ 67027059 (-)
G1008507 NA non-coding downstream 130580 67026211 ~ 67026450 (-)
G1008489 LOC108255714 non-coding downstream 181949 66974497 ~ 66975081 (-)
G1008470 NA non-coding downstream 209877 66946490 ~ 66947153 (-)
G1008808 NA non-coding upstream 117439 67461614 ~ 67461818 (-)
G1008816 NA non-coding upstream 122638 67466813 ~ 67467056 (-)
G1008827 NA non-coding upstream 128450 67472625 ~ 67472866 (-)
G1009382 NA non-coding upstream 134040 67478215 ~ 67478353 (-)
G1009413 NA non-coding upstream 196552 67540727 ~ 67542731 (-)
G1007506 NA other downstream 784081 66372642 ~ 66372949 (-)
G1006106 NA other downstream 2057474 65098960 ~ 65099556 (-)
G1005628 LOC106580457 other downstream 2793253 64360764 ~ 64363777 (-)
G1004487 NA other downstream 3355028 63801529 ~ 63802002 (-)
LOC110536206 LOC106580443 other downstream 4410782 62740236 ~ 62804200 (-)
G1009720 NA other upstream 626896 67971071 ~ 67971328 (-)
G1010443 NA other upstream 1343082 68687257 ~ 68687962 (-)
G1010922 NA other upstream 1772332 69116507 ~ 69119486 (-)
G1011014 NA other upstream 1961161 69305336 ~ 69306428 (-)
G1012814 NA other upstream 3540301 70884476 ~ 70890991 (-)

Expression


Co-expression Network