XLOC_028452 (rassf3)


Basic Information

Item Value
gene id XLOC_028452
gene name rassf3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4540223 ~ 4592287 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055223
TGGAGACTTGGTGCTGTTCAGGACGGGACTTTAAGTCATGGGTTTGGCGAAAGGGTTTGGAAGGACTTTAAGAAGGCTTACTAGACTCCTCTACCGCTTCCCGAAAGCAATGCGATGCTCCGGACGGCTGGAAGTTAGTCTGCTGTGGAGGTCATCCGGTTGTAAATACACATGTCATGCTCAGTGTCGTGAGCAGGTGGCGCTAGACTGTCATCAGAGCGGCTCAGCTCATCTGAATGGAGTTCAGCTCAGTTTTCTCGCTCAGGATCAACTGAACAACAACCAGGCCTCACACAGCGATGTGGAGAAAGAGAAGGAGCTGCGAACTCATCTCACTTTTGAGGAGATCAGACAGAAGGTGGACCGGTACAACAGAGACTCACGAGACTTCTACAAAATGTCACTGAGTTCCAGTGGCACATACACTGGCTTCATCAACGTGCAGATGGACCTGCGGCGGCCCATTACTGTTAAAGGAGGAGGCGCAGGAGGAGTCAAAGCAAAGGAGGCCTTTTACCTGCCCCGCGGCTCCATCAACACCCTGCACATCAGCAACAGCAACACGGTGCGACAGGTGATCGAAGCCCTGCTCAAGAAGTTCACCGTCGCAGACAACCCTGCCAAATTCGCCCTCTACAAACGCTTCAGCAGAGAAGACCAAGttTACACCTGTAAGCTCTCCGAAGAAGAGCACCCTCTGTTTCTGCGTCTGGTGGCAGGACCGAATACAGACACGCTCAGCTTTGTACTCAAAGAGCAGCAAACCGGTGAATGGGACGCCTTTTCCATCCCTGAACTGCAAAACTTCATCCGCATCCTGGAAAAAGAGGAGCAGGACCAGATGTGCTCCATAAGCAGACGCTACAACACGTATAGAGAGAAACTGGAGGAGGCCATGAAAACCGCGGCAGGACGTCCTGGATAAAGCCAACATACAGTACAGAGTAACAAACGAACTGTAGCGCTGCTGCCTCTAGTGGTCACTGCGTGTCATGAACACTCATTACTGTGCCAACAGGACACCAGAAACTCACAGGAGTTAAAACTGACCTCCCACAATGCACCCCGTGTGCCATATTTACCATCGTTTTCCACTCTTTCACACTTATTTCTCTTCCCTTACCTCTCGTGGAAACAATCGGAGCGTATTTAATTGGATGCTGTGGTTtgtacatatttttgtttgttgttttaatttatgttCGTTTATTTTACTGAAG
>TCONS_00055224
ATGTCGTGGACGAGCACCATGAGTAGTGGATACAGTAGTTTGGAAGAGGATTCAGAGGAATATTTTTTCACTGCCAGAACTTCTCTGTTCAAGAAGCCTTTGCTTAAACCTCCGAACCTCAAGGATGTGGAGAAAGAGAAGGAGCTGCGAACTCATCTCACTTTTGAGGAGATCAGACAGAAGGTGGACCGGTACAACAGAGACTCACGAGACTTCTACAAAATGTCACTGAGTTCCAGTGGCACATACACTGGCTTCATCAACGTGCAGATGGACCTGCGGCGGCCCATTACTGTTAAAGGAGGAGGCGCAGGAGGAGTCAAAGCAAAGGAGGCCTTTTACCTGCCCCGCGGCTCCATCAACACCCTGCACATCAGCAACAGCAACACGGTGCGACAGGTGATCGAAGCCCTGCTCAAGAAGTTCACCGTCGCAGACAACCCTGCCAAATTCGCCCTCTACAAACGCTTCAGCAGAGAAGACCAAGttTACACCTGTAAGCTCTCCGAAGAAGAGCACCCTCTGTTTCTGCGTCTGGTGGCAGGACCGAATACAGACACGCTCAGCTTTGTACTCAAAGAGCAGCAAACCGGTGAAGTCATGTGGGACGCCTTTTCCATCCCTGAACTGCAAAACTTCATCCGCATCCTGGAAAAAGAGGAGCAGGACCAGATGTGCTCCATAAGCAGACGCTACAACACGTATAGAGAGAAACTGGAGGAGGCCATGAAAACCGCGGCAGGACGTCCTGGATAA
>TCONS_00055225
tgggtgtgttcTTTTCCAGTGAGCCGCTCCGGTTAGTCACTCAGTTTTAGTTTGAGAAGTGTTTAAGAAGGAATGAGCGCGATTTGCGTGGCGTTTGGAGCATTTAAAGTATTTTCAACACGCCGAtcttttgttatatatatagGTAATACACATTTAACAAGAAACGTAAACGCGTTTTTGGAATTAGCCGACTGTTTCGCCTTATTGAGCGAATTAAAGCGAATGGTTAGGCAGCGACAGTGACTCGTGCTGATTCAAGTTAAATCTTACTGTATTTTTTCGCTGATATAAAGCTCAGTTTTTGGATGTGTCAGAGTTTCTTTTCAAATGTCGTGGACGAGCACCATGAGTAGTGGATACAGTAGTTTGGAAGAGGATTCAGAGGAATATTTTTTCACTGCCAGAACTTCTCTGTTCAAGAAGCCTTTGCTTAAACCTCCGAACCTCAAGGATGTGGAGAAAGAGAAGGAGCTGCGAACTCATCTCACTTTTGAGGAGATCAGACAGAAGGTGGACCGGTACAACAGAGACTCACGAGACTTCTACAAAATGTCACTGAGTTCCAGTGGCACATACACTGGCTTCATCAACGTGCAGATGGACCTGCGGCGGCCCATTACTGTTAAAGGAGGAGGCGCAGGAGGAGTCAAAGCAAAGGAGGCCTTTTACCTGCCCCGCGGCTCCATCAACACCCTGCACATCAGCAACAGCAACACGGTGCGACAGGTGATCGAAGCCCTGCTCAAGAAGTTCACCGTCGCAGACAACCCTGCCAAATTCGCCCTCTACAAACGCTTCAGCAGAGAA

Function

symbol description
rassf3 Predicted to be involved in signal transduction. Predicted to act upstream of or within regulation of apoptotic process. Predicted to be active in cytoplasm. Orthologous to human RASSF3 (Ras association domain family member 3).

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-100422-9 Predicted to be involved in signal transduction. Predicted to act upstream of or within regulation of apoptotic process. Predicted to be active in cytoplasm. Orthologous to human RASSF3 (Ras association domain family member 3).

Ensembl:

ensembl_id ENSDARG00000059064

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055223 False 1220 mRNA 0.50 6 4540223 4592287
TCONS_00055224 False 756 mRNA 0.51 5 4540518 4570475
TCONS_00055225 True 810 processed_transcript 0.46 3 4546209 4570805

Neighbor

gene id symbol gene type direction distance location
XLOC_028451 zgc:194209 coding downstream 5034 4526248 ~ 4535189 (-)
XLOC_028450 FP102892.1 coding downstream 23715 4514438 ~ 4516508 (-)
XLOC_028449 tbc1d30 coding downstream 32462 4484651 ~ 4507761 (-)
XLOC_028448 ntf3 coding downstream 108248 4397503 ~ 4431975 (-)
XLOC_028447 CU468826.3 coding downstream 153211 4376498 ~ 4387012 (-)
XLOC_028453 CABZ01020840.1 coding upstream 9528 4601815 ~ 4612116 (-)
XLOC_028454 DGKI coding upstream 34507 4626794 ~ 4706893 (-)
XLOC_028455 creb3l2 coding upstream 120123 4712410 ~ 4751983 (-)
XLOC_028456 ssbp1 coding upstream 160335 4752622 ~ 4756349 (-)
XLOC_028457 si:ch211-258f14.2 coding upstream 165714 4758001 ~ 4780667 (-)
XLOC_028446 CU468826.1 non-coding downstream 165519 4321168 ~ 4374704 (-)
XLOC_028443 NA non-coding downstream 311068 4178834 ~ 4229155 (-)
XLOC_028444 NA non-coding downstream 329759 4207590 ~ 4210464 (-)
XLOC_028442 NA non-coding downstream 376347 4162825 ~ 4163876 (-)
XLOC_028461 NA non-coding upstream 348180 4940467 ~ 4962892 (-)
XLOC_028462 NA non-coding upstream 370670 4962957 ~ 4967711 (-)
XLOC_028471 NA non-coding upstream 829459 5421746 ~ 5459469 (-)
XLOC_028472 NA non-coding upstream 836031 5428318 ~ 5441954 (-)
XLOC_028474 NA non-coding upstream 952715 5545002 ~ 5553182 (-)

Expression


Co-expression Network