LOC110535098 (LOC106580534)


Basic Information

Item Value
gene id LOC110535098
gene name LOC106580534
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 68364480 ~ 68413213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936189.1
TCAAGACTGTTTCACCCCCGCTCCGCCGTGCAACCGCTTTCACACCCTGAGTGGCGAGTGCGTTGGTTGGAGTCTGAAGAGCCAAACTGCATACGGAAACAGTGCATAGCGCACCGAATTCGGATCCCAGTGTATCCTACGTAGCTAACGCAGTTCAAATATATCACTGTGTAGAATATAATCAATACATTTCTGGGGGAACACTTTACTCTTTATAAACGAATTGGACTGTTGTTATAACGATCTTCTGGATAAAGACTATAACTACTGGGTATTGCACTGACTGGCGGCCATTGCATTTCCCCCCATCCTCAAGATGCATATGAATAGCTTATTAAATCAATGGACAGACATCACTCCCCACTCCAGGATGTGTGACTGTGACGTGGATGTGTCCTCAGAGCCCACCAGCCCCAGGCTCTATGGTGAGTCCTCTGACAAATACTACCATGTGGACCGCTGGCAGAAGCTCCGCACCGCCGTCCGCAAGCTGGAGTTCTGGGAGAACTTTACCGCCGAGCTCATCGGGAGCGGCTTCTTCTCCAAAGTCTACAAGGTGATTCATAGTACGAGCCATAAGGTGATGGTGGTGAAGATCTATAAGAATGATGTGGACCAGGACAGCATCGTGCGTGAGATCAGCCTACTGCAAAAACTCTCCCATCCCAACATAGTCAGGTATCTGGGGATATGTGTGAAGGAAGATAAACTCTACCCTATTTTAGAGTATGTTAGTGGAGGATGTCTGGAGGAACTGTTGGCCAGGAAGGATGTGTCTCTGTGCTGGAGGGAGAAGGTGGACCTGGCCTGTgacatcaccagaggaatgatCTACCTGCATTACAAGAACATCTACCACAGGGACCTCAACTCTaagAACTGTCTGATCCGTGTGACGGCGCGGGGCAGGGAGGCCCTAGTCACAGACTTTGGCCTGGCCAGAGAGGTGGTGGAGCTGCCGGTTAAAGACCCAGAGAGGAAGCTCTCTCTGGTGGGATCTGCCTTCTGGATGGCCCCGGAGATGCTGCGTGGGGAACCCTACGATCGCAAGGTGGATGTATTTTCCTTTGGAATTATGCTCTGTGAAATACTGGCAAGGATCCCTGCTGACCCAGAGATTCTACCAAGAACCCAGgaCTATGGCCTGGATGTGAATGCATTTAGGGAGCTGGTGGGCGGGTGTCCTCAGCGGGTGTTGGAGCTGGCAGCCAGCTGCTGTCTGATGGAGTCCTTCAGGAGACCAGCATTCACAGAGCTGCTGGATGAACTGGGGGAGATCGCTGAGACTCTGGAACCGCCCCCTAACCCGCCCCCTAACTCAGAGCTGACTACTGGGTGAGCTGCCTGGGTTGGCCGAAGCCCCACCCACCCATCTATCCTGAGGACTGGAGGATTTGGGATTTGTATATGGGctcaatcccaaatggcaccttattccttatatagtgtactatgTTTTACCAGAGCCttgtgctctggtcaaaagtagtgcactatatagggaatagggtaccatttgggaagcaacAATAGACAGTTGCACAGGGGCAGGGGCACAACACTTCACCAGGATGACCTCTCTACAGGGGCTGACCTCTCTGTTTGTGCCTGCCTACACTGCACCTAAACTGCACCTACAGATGTGTCGGGGGGTAGCTCCACAGTTTTCAAGTGAGACCCTGGTGGAATAATGGATGGAATAGACAGTATGTATCTTGAAGAGAGGGTTTCTTTGGAAGCTTTATTTGACCAGTTCACACACTTTGTGTACAGGTGATAGAAGTTGGGCATAATTTTGCTTAACTTTTTGTCTTTCCTTAACTTACATTTTCTTAATCTTACTCTCATAAACTGCTTTTTTGTTtaaatttgttgttgttgttgttgttaatgtttATGACAGTGTTTCGTGATGTaactgatgatgatgaggataaacatgatgatgaggaggatggtgatgg
>XM_036936190.1
TCAAGACTGTTTCACCCCCGCTCCGCCGTGCAACCGCTTTCACACCCTGAGTGGCGAGTGCGTTGGTTGGAGTCTGAAGAGCCAAACTGCATACGGAAACAGTGCATAGCGCACCGAATTCGGATCCCAGTGTATCCTACGTAGCTAACGCAGTTCAAATATATCACTGTGTAGAATATAATCAATACATTTCTGGGGGAACACTTTACTCTTTATAAACGAATTGGACTGTTGTTATAACGATCAGACATCACTCCCCACTCCAGGATGTGTGACTGTGACGTGGATGTGTCCTCAGAGCCCACCAGCCCCAGGCTCTATGGTGAGTCCTCTGACAAATACTACCATGTGGACCGCTGGCAGAAGCTCCGCACCGCCGTCCGCAAGCTGGAGTTCTGGGAGAACTTTACCGCCGAGCTCATCGGGAGCGGCTTCTTCTCCAAAGTCTACAAGGTGATTCATAGTACGAGCCATAAGGTGATGGTGGTGAAGATCTATAAGAATGATGTGGACCAGGACAGCATCGTGCGTGAGATCAGCCTACTGCAAAAACTCTCCCATCCCAACATAGTCAGGTATCTGGGGATATGTGTGAAGGAAGATAAACTCTACCCTATTTTAGAGTATGTTAGTGGAGGATGTCTGGAGGAACTGTTGGCCAGGAAGGATGTGTCTCTGTGCTGGAGGGAGAAGGTGGACCTGGCCTGTgacatcaccagaggaatgatCTACCTGCATTACAAGAACATCTACCACAGGGACCTCAACTCTaagAACTGTCTGATCCGTGTGACGGCGCGGGGCAGGGAGGCCCTAGTCACAGACTTTGGCCTGGCCAGAGAGGTGGTGGAGCTGCCGGTTAAAGACCCAGAGAGGAAGCTCTCTCTGGTGGGATCTGCCTTCTGGATGGCCCCGGAGATGCTGCGTGGGGAACCCTACGATCGCAAGGTGGATGTATTTTCCTTTGGAATTATGCTCTGTGAAATACTGGCAAGGATCCCTGCTGACCCAGAGATTCTACCAAGAACCCAGgaCTATGGCCTGGATGTGAATGCATTTAGGGAGCTGGTGGGCGGGTGTCCTCAGCGGGTGTTGGAGCTGGCAGCCAGCTGCTGTCTGATGGAGTCCTTCAGGAGACCAGCATTCACAGAGCTGCTGGATGAACTGGGGGAGATCGCTGAGACTCTGGAACCGCCCCCTAACCCGCCCCCTAACTCAGAGCTGACTACTGGGTGAGCTGCCTGGGTTGGCCGAAGCCCCACCCACCCATCTATCCTGAGGACTGGAGGATTTGGGATTTGTATATGGGctcaatcccaaatggcaccttattccttatatagtgtactatgTTTTACCAGAGCCttgtgctctggtcaaaagtagtgcactatatagggaatagggtaccatttgggaagcaacAATAGACAGTTGCACAGGGGCAGGGGCACAACACTTCACCAGGATGACCTCTCTACAGGGGCTGACCTCTCTGTTTGTGCCTGCCTACACTGCACCTAAACTGCACCTACAGATGTGTCGGGGGGTAGCTCCACAGTTTTCAAGTGAGACCCTGGTGGAATAATGGATGGAATAGACAGTATGTATCTTGAAGAGAGGGTTTCTTTGGAAGCTTTATTTGACCAGTTCACACACTTTGTGTACAGGTGATAGAAGTTGGGCATAATTTTGCTTAACTTTTTGTCTTTCCTTAACTTACATTTTCTTAATCTTACTCTCATAAACTGCTTTTTTGTTtaaatttgttgttgttgttgttgttaatgtttATGACAGTGTTTCGTGATGTaactgatgatgatgaggataaacatgatgatgaggaggatggtgatgg

Function

NR:

description
PREDICTED: dual specificity testis-specific protein kinase 1-like isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936189.1 False 1964 mRNA 0.49 10 68364480 68413213
XM_036936190.1 True 1861 mRNA 0.50 9 68364480 68413213

Neighbor

gene id symbol gene type direction distance location
LOC110536289 LOC106580533 coding upstream 3276 68287058 ~ 68361204 (+)
LOC118937378 NA coding upstream 262680 68099125 ~ 68101800 (+)
LOC110536285 LOC106580528 coding upstream 291381 68064148 ~ 68073099 (+)
LOC110536283 LOC106580527 coding upstream 316516 68041053 ~ 68047964 (+)
LOC110535097 LOC106580544 coding upstream 891701 67453635 ~ 67472779 (+)
LOC110536291 LOC106580540 coding downstream 171414 68584627 ~ 68587134 (+)
LOC110536292 LOC106580550 coding downstream 177496 68590709 ~ 68611500 (+)
LOC118937485 NA coding downstream 248537 68661750 ~ 68661802 (+)
LOC110535101 LOC106580561 coding downstream 274008 68687221 ~ 68847333 (+)
LOC118937380 NA coding downstream 507653 68918586 ~ 68924491 (+)
G1009936 NA non-coding upstream 2180 68362021 ~ 68362300 (+)
G1009280 NA non-coding upstream 176690 68187562 ~ 68187790 (+)
G1009244 NA non-coding upstream 249555 68114453 ~ 68114925 (+)
G1009233 NA non-coding upstream 272976 68088749 ~ 68091504 (+)
G1009970 NA non-coding downstream 3393 68416606 ~ 68416817 (+)
G1009973 NA non-coding downstream 6350 68419563 ~ 68419767 (+)
G1009983 NA non-coding downstream 19389 68432602 ~ 68432919 (+)
G1009990 NA non-coding downstream 30436 68443649 ~ 68447274 (+)
G1009991 NA non-coding downstream 38018 68451231 ~ 68451543 (+)
G1008017 NA other upstream 1482229 66881799 ~ 66882251 (+)
LOC110536267 LOC106580513 other upstream 1566263 66774135 ~ 66798230 (+)
G1007556 NA other upstream 1951545 66412574 ~ 66412935 (+)
G1007088 NA other upstream 2346907 66009581 ~ 66017573 (+)
G1007008 NA other upstream 2465112 65898748 ~ 65899368 (+)
LOC110536300 LOC106580593 other downstream 985505 69398535 ~ 69400234 (+)
G1011336 NA other downstream 1220288 69633501 ~ 69633876 (+)
sb:cb288 NA other downstream 1292221 69705334 ~ 69711411 (+)

Expression


Co-expression Network