LOC110536291 (LOC106580540)


Basic Information

Item Value
gene id LOC110536291
gene name LOC106580540
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 68584627 ~ 68587134 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622014.2
ATAACAAAAGGTTTTATTCTGACGTCGGTGTCTTCGTGTGCGCTCTATCTTCCGGTGGGCACTGTTCAAGATTTGTCCTCCAGCTCGAGACCAAAACTCTTCGATGCGATGGGTGTATTGAATGCTCTTCGAAGGGGCCTTGTGAGAGGAGCAGATCGTATGGCTGAATTCACCAGCAAGCGTGGCTCAAGGACTCACTACAAAGGCAGAGGGGCACAGCCAACGGGAGTACTGACCTCCAGCAGAAAATTTGTTCCAGTACAGGCAATGATTCCTCAGTTTGTGGTGCCAAACTTGGAGGGATTCAAACTCAAGCCCTACGTGTCGTACCGCACCCCGGCTGGAACGGAGCCCGCTGTCACCCCTGAGGGTCTGTTCTCTGAGACTGTGGCCCCACAGATCCAGAAAGACTTTGAGGAAGGCTCCTTTGATAAGGAACAGCTGGAGAAATACGGGTTTGAACCCACACAGGAAGGAAAGTTATTCAAACTCTACCCCAAGAACTTTATACGATAAGTAGTCCACCAAATCTGATCCATCTGGAACTCTGAGCGTTAAGGATCATTGACTTATTTAGTTTGTGTTGGGAGGTCAAGAGGTTGTTTTACTGGACCCTGGTGTATTATGAATGTGCTTGCTGAAAGTACTAGTATACGCACTTCTTATTTAAACATGTATATTATGTTTTggtctttattttttttagacaTCAATAAGCATGTTGGCTACAGGTTATTTGAATGTAGTCGAGGTTTGCACTAAGCAAAATCATTGCTTAGtgcaaaatgcttacttacgagtccttaaccaacaatgcagttttttaaAATCCAGATAAGAAATAACaataagtaattaaagagcagtgttaaaataacaatagtgagactatatacaggggggtaccagtacatagtcaatgtgcgggggcactgggttagtcgaggtaatatgtacatgtagttagttattaaagtaactatgcatatataacaacagagtagcagcacTGTAAAaggagccatttgattagatgttcaggagtcttatggcttgggggtagaagctgtttagaagcctcttggacctaggctTGGCGctttggtaccgcttgccgtgcggtagcagtgaGAACAGTCTGACGAGGGTGGCtgggagtctttggcaatttttgggGCTTTTTCTGacgccgcctggtatagagatcctggatgacaggaagcttggccccagtgatgtactgggccgtttgcactaccctctgtagtgctttgcggttggaggctgagcaattgccataccaggcagcgatgcaacaagtcaggatggtgcagctgtagaaccttttgaggatctgaggacgcaTGGCAAATTTTTCTGtgtatatatacaaataaataaatgtaacatgtaaagtgGCCCATGTTTTATTCTCTTAAAtacaagatcccagaaatgttccatactatCACGTTTGTTGCATAGAATGTTTACAATCTTTTACATTTTTTGTACAGTAATATATACATGGAAGTGCTTTTCCTGAAACATTTCTCAGCACAGTTGTAACAAGCCCATGATGCACTTGTCAGGGAAGCAAGCATCATTTAGGGATAGTTCACTGAACATTGTATAatgttcattagtccactgttgatatgCTCCCCAAAAATTATACGTCAGCAGTAAAGTTTTCAACATATACCACTTTCAGTTTAAAAAATCTAAACGTGTGACAGTTTTTTGTATCACAGTTTTTGCTTTTTACTGTTAGTGCTCTATCTTCAAGATTTGATAtttataattaaaaaaataataattgaaa
>TU1149042
GCTCTATCTTCCGGTGGGCACTGTTCAAGATTTGTCCTCCAGCTCGAGACCAAAACTCTTCGATGCGATGGGTGTATTGAATGCTCTTCGAAGGGGCCTTGTGAGAGGAGCAGATCGTATGGCTGAATTCACCAGCAAGCGTGGCTCAAGGACTCACTACAAAGGCAGAGGGGCACAGCCAACGGGAGTACTGACCTCCAGCAGAAAATTTGTTCCAGTACAGGCAATGATTCCTCAGTTTGTGGTGCCAAACTTGGAGGGATTCAAACTCAAGCCCTACGTGTCGTACCGCACCCCGGCTGGAACGGAGCCCGCTGTCACCCCTGAGGGTCTGTTCTCTGAGACTGTGGCCCCACAGATCCAGAAAGACTTTGAGGAAGGCTCCTTTGATAAGGAACAGCTGGAGAAATACGGGTTTGAACCCACACAGGAAGGAAAGTTATTCAAACTCTACCCCAAGAACTTTATACGATAAGTAGTCCACCAAATCTGATCCATCTGGAACTCTGAGCGTTAAGGATCATTGACTTATTTAGTTTGTGTTGGGAGGTCAAGAGGTTGTTTTACTGGACCCTGGTGTATTATGAATGTGCTTGCTGAAAGTACTAGTATACGCACTTCTTATTTAAACATGTATATTATGTTTTggtctttattttttttagacaTCAATAAGCATGTTGGCTACAGGTTATTTGAATGTAGTCGAGGTTTGCACTAAGCAAAATCATTGCTTAGtgcaaaatgcttacttacgagtccttaaccaacaatgcagttttttaaAATCCAGATAAGAAATAACaataagtaattaaagagcagtgttaaaataacaatagtgagactatatacaggggggtaccagtacatagtcaatgtgcgggggcactgggttagtcgaggtaatatgtacatgtagttagttattaaagtaactatgcatatataacaacagagtagcagcacTGTAAAaggagccatttgattagatgttcaggagtcttatggcttgggggtagaagctgtttagaagcctcttggacctaggctTGGCGctttggtaccgcttgccgtgcggtagcagtgaGAACAGTCTGACGAGGGTGGCtgggagtctttggcaatttttgggGCTTTTTCTGacgccgcctggtatagagatcctggatgacaggaagcttggccccagtgatgtactgggccgtttgcactaccctctgtagtgctttgcggttggaggctgagcaattgccataccaggcagcgatgcaacaagtcaggatggtgcagctgtagaaccttttgaggatctgaggacgcaTGGCAAATTTTTCTGtgtatatatacaaataaataaatgtaacatgtaaagtgGCCCATGTTTTATTCTCTTAAAtacaagatcccagaaatgttccatactatCACGTTTGTTGCATAGAATGTTTACAATCTTTTACATTTTTTGTACAGTAATATATACATGGAAGTGCTTTTCCTGAAACATTTCTCAGCACAGTTGTAACAAGCCCATGATGCACTTGTCAGGGAAGCAAGCATCATTTAGGGATAGTTcactgttgatatgCTCCCCAAAAATTATACGTCAGCAGTAAAGTTTTCAACATATACCACTTTCAGTTTAAAAAATCTAAACGTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622014.2 False 1825 mRNA 0.42 2 68584627 68587134
TU1149042 True 1663 TUCP 0.43 3 68584668 68587042

Neighbor

gene id symbol gene type direction distance location
LOC110535098 LOC106580534 coding upstream 171414 68364480 ~ 68413213 (+)
LOC110536289 LOC106580533 coding upstream 223423 68287058 ~ 68361204 (+)
LOC118937378 NA coding upstream 482827 68099125 ~ 68101800 (+)
LOC110536285 LOC106580528 coding upstream 511528 68064148 ~ 68073099 (+)
LOC110536283 LOC106580527 coding upstream 536663 68041053 ~ 68047964 (+)
LOC110536292 LOC106580550 coding downstream 3575 68590709 ~ 68611500 (+)
LOC118937485 NA coding downstream 74616 68661750 ~ 68661802 (+)
LOC110535101 LOC106580561 coding downstream 100087 68687221 ~ 68847333 (+)
LOC118937380 NA coding downstream 333732 68918586 ~ 68924491 (+)
LOC110536296 cbwd3 coding downstream 604087 69191221 ~ 69206345 (+)
G1010150 NA non-coding upstream 8865 68575263 ~ 68575762 (+)
G1010146 NA non-coding upstream 31294 68553099 ~ 68553333 (+)
G1010133 NA non-coding upstream 48466 68535879 ~ 68536161 (+)
G1010129 NA non-coding upstream 53087 68531289 ~ 68531540 (+)
G1010125 NA non-coding upstream 57187 68527187 ~ 68527440 (+)
G1010174 NA non-coding downstream 2663 68589797 ~ 68590115 (+)
G1010175 NA non-coding downstream 3036 68590170 ~ 68590567 (+)
G1010298 NA non-coding downstream 71404 68658538 ~ 68658757 (+)
G1010356 NA non-coding downstream 148271 68735405 ~ 68738759 (+)
G1008017 NA other upstream 1702376 66881799 ~ 66882251 (+)
LOC110536267 LOC106580513 other upstream 1786410 66774135 ~ 66798230 (+)
G1007556 NA other upstream 2171692 66412574 ~ 66412935 (+)
G1007088 NA other upstream 2567054 66009581 ~ 66017573 (+)
G1007008 NA other upstream 2685259 65898748 ~ 65899368 (+)
LOC110536300 LOC106580593 other downstream 811584 69398535 ~ 69400234 (+)
G1011336 NA other downstream 1046367 69633501 ~ 69633876 (+)
sb:cb288 NA other downstream 1118300 69705334 ~ 69711411 (+)
LOC110536323 LOC106580573 other downstream 1317814 69904948 ~ 69917078 (+)

Expression


Co-expression Network