LOC110536300 (LOC106580593)


Basic Information

Item Value
gene id LOC110536300
gene name LOC106580593
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69398535 ~ 69400234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622022.2
CGAACAAGCCCACTTTTGGTCCAGTAGTGCAACACAATGAAAAACGGCTTCACAAAAGGGATCTGCTCAAACGCACGCATGAACTTTCTTGAATTTGTCTAGAGTCTGAGGTCACTGGTATCCTTCTTTCACAATAAAACTACAATTCCATACATGCCAGGCTGTACACGTCATAACCACTAGCAAGAACCAACTTCCTGGTGGTAGGGTTCCGGATCAGCGTGGGATAAAAACAAAAATCTCTGTTAAGATTGGAGTTGCTGTTGGTGATCAGGATGATTGACATGCGGGCGTGGGCGGAGTACCTGGTGGAATGGGCGGCCAAGGACCCGTACGGCTTTTTGACCACTGTCATCCTGGCACTTACACCCCTCTTCATCGCCAGCGCCCTGTTGTCGTGGAAACTGGCCAAGATGATTGAAGTGCGCGACCGTGaacagaagaagaagcagaaacGTCAGGAGAATATCGCCAAGGCCAAGAGGACCAAGAAAGACTGAGCTGTGGAGGGAGAAAGAATAGCTACAGTACACAGCTATGCTCAACACTCTCTTCACTTGCAACACTGCTCGCCCTCGCCTCCTCAACCCAGTCCAGTGCAGGAAGGATTGTAGGCCCTACATGGTGGCCTTAGAGCTGAGAGGGAACTGTATAGACAGAGGAGGCTCATTTGATTGGGCTATCAGCGTGTAAACCGGGATTCTGATTATGGTGGTGTTGCAGTACTTAGCATTCCATTTGTAACAACTCCATTCCAATGATTTCATAAACTACTTTGATTGTTTATCTCCATTTAAAATGACTTGTTACATTTCTGAATCACATGCATGTTTTTATTAAATTAAGTTCTAAATAAAA
>XM_036936214.1
TGAGGCTGTTTTACAATGCaaataagctagctagctacctaacgttagcttAATTGATTACAGACGCTAACTGAGTTTATGTAGCTAACGGTTAGTGGCTAAGCTAATGTTAGTTGTAAAGAGGCAATCTGTCTTTTGCTTCTCCAGTACTAAAGTAATGTGTATATTCAGTGCGTTGTGCATAGGCTATTTCATGCTCATGGAATAACTATTTTGGGCGTGGAACTATCTGTGGTTGAGACTTTAAAATTACAGAGGCAGTTTGACTGTTTTTCACTTGTATACCAGTACACGGATTGGAGTTGCTGTTGGTGATCAGGATGATTGACATGCGGGCGTGGGCGGAGTACCTGGTGGAATGGGCGGCCAAGGACCCGTACGGCTTTTTGACCACTGTCATCCTGGCACTTACACCCCTCTTCATCGCCAGCGCCCTGTTGTCGTGGAAACTGGCCAAGATGATTGAAGTGCGCGACCGTGaacagaagaagaagcagaaacGTCAGGAGAATATCGCCAAGGCCAAGAGGACCAAGAAAGACTGAGCTGTGGAGGGAGAAAGAATAGCTACAGTACACAGCTATGCTCAACACTCTCTTCACTTGCAACACTGCTCGCCCTCGCCTCCTCAACCCAGTCCAGTGCAGGAAGGATTGTAGGCCCTACATGGTGGCCTTAGAGCTGAGAGGGAACTGTATAGACAGAGGAGGCTCATTTGATTGGGCTATCAGCGTGTAAACCGGGATTCTGATTATGGTGGTGTTGCAGTACTTAGCATTCCATTTGTAACAACTCCATTCCAATGATTTCATAAACTACTTTGATTGTTTATCTCCATTTAAAATGACTTGTTACATTTCTGAATCACATGCATGTTTTTATTAAATTAAGTTCTAAATAAAA
>TU1150028
CAAGAACCAACTTCCTGGTGGTAGGGTTCCGGATCAGCGTGGGATAAAAACAAAAATCTCTGTTAAGATTGGAGTTGCTGTTGGTGATCAGGATGATTGACATGCGGGCGTGGGCGGAGTACCTGGTGGAATGGGCGGCCAAGGACCCGTACGGCTTTTTGACCACTGTCATCCTGGCACTTACACCCCTCTTCATCGCCAGCGCCCTGTTGTCGTGGAAACTGGCCAAGATGATTGAAGTGCGCGACCGTGaacagaagaagaagcagaaacGTCAGGAGAATATCGCCAAGGCCAAGAGGACCAAGAAAGACTGAGCTGTGGAGGGAGAAAGAATAGCTACAGTACACAGCTATGCTCAACACTCTCTTCACTTGCAACACTGCTCGCCCTCGCCTCCTCAACCCAGTCCAGTGCAGGAAGGATTGTAGGCCCTACATGGTGGCCTTAGAGCTGAGAGGGAACTGTATAGACAGAGGAGGCTCATTTGATTGGGCTATCAGCGTGTAAACCGGGATTCTGATTATGGTGGTGTTGCAGTACTTAGCATTCCATTTGTAACAACTCCATTCCAATGATTTCATAAACTACTTTGATTGTTTATCTCCATTTAAAATGACTTGTTACATTTCTGAATCACATGCATGTTTTTATTAAATTAAGTTCTAAATAAAA

Function

NR:

description
small integral membrane protein 15-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622022.2 False 858 mRNA 0.46 2 69398535 69400234
XM_036936214.1 False 903 mRNA 0.44 2 69398882 69400234
TU1150028 True 675 TUCP 0.47 2 69398718 69400234

Neighbor

gene id symbol gene type direction distance location
LOC110536297 LOC106580555 coding upstream 138618 69210550 ~ 69259917 (+)
LOC110536644 LOC106580559 coding upstream 189203 69207662 ~ 69209332 (+)
LOC110536296 cbwd3 coding upstream 192190 69191221 ~ 69206345 (+)
LOC118937380 NA coding upstream 474226 68918586 ~ 68924491 (+)
LOC110535101 LOC106580561 coding upstream 551202 68687221 ~ 68847333 (+)
ercc8 ercc8 coding downstream 35085 69435319 ~ 69456823 (+)
LOC110536303 LOC106580590 coding downstream 70816 69471050 ~ 69484931 (+)
agpat9l LOC106580584 coding downstream 241855 69642089 ~ 69655067 (+)
LOC110536313 LOC106580580 coding downstream 297727 69696110 ~ 69705172 (+)
sb:cb288 NA coding downstream 305100 69705334 ~ 69711411 (+)
G1011039 NA non-coding upstream 46265 69352037 ~ 69352270 (+)
G1011034 NA non-coding upstream 54088 69344132 ~ 69344447 (+)
G1011033 NA non-coding upstream 70798 69327197 ~ 69327737 (+)
G1011032 NA non-coding upstream 71520 69326580 ~ 69327015 (+)
G1011031 NA non-coding upstream 72572 69325727 ~ 69325963 (+)
G1011109 LOC106580587 non-coding downstream 123186 69523420 ~ 69524131 (+)
G1011315 LOC106580585 non-coding downstream 190359 69590593 ~ 69592141 (+)
G1011318 NA non-coding downstream 194814 69595048 ~ 69595470 (+)
G1011339 NA non-coding downstream 235385 69635619 ~ 69635837 (+)
G1011340 NA non-coding downstream 235935 69636169 ~ 69636381 (+)
LOC110536291 LOC106580540 other upstream 811493 68584627 ~ 68587134 (+)
G1008017 NA other upstream 2516284 66881799 ~ 66882251 (+)
LOC110536267 LOC106580513 other upstream 2600318 66774135 ~ 66798230 (+)
G1007556 NA other upstream 2985600 66412574 ~ 66412935 (+)
G1011336 NA other downstream 233267 69633501 ~ 69633876 (+)
LOC110536323 LOC106580573 other downstream 504714 69904948 ~ 69917078 (+)
LOC110536331 LOC106580567 other downstream 601235 70001416 ~ 70009325 (+)
G1011531 NA other downstream 618869 70019103 ~ 70019906 (+)

Expression


Co-expression Network