Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110536300 |
| gene name | LOC106580593 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048575.1 |
| NCBI id | CM023229.2 |
| chromosome length | 86280908 |
| location | 69398535 ~ 69400234 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| small integral membrane protein 15-like |
| id | name | namespace |
|---|---|---|
| GO:0016021 | integral component of membrane | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021622022.2 | False | 858 | mRNA | 0.46 | 2 | 69398535 | 69400234 |
| XM_036936214.1 | False | 903 | mRNA | 0.44 | 2 | 69398882 | 69400234 |
| TU1150028 | True | 675 | TUCP | 0.47 | 2 | 69398718 | 69400234 |
69,395,600
69,396,000
69,396,400
69,396,800
69,397,200
69,397,600
69,398,000
69,398,400
69,398,800
69,399,200
69,399,200
69,399,600
69,400,000
69,400,400
69,400,800
69,401,200
69,401,600
69,402,000
69,402,400
69,402,800
NC_048575.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110536297 | LOC106580555 | coding | upstream | 138618 | 69210550 ~ 69259917 (+) |
| LOC110536644 | LOC106580559 | coding | upstream | 189203 | 69207662 ~ 69209332 (+) |
| LOC110536296 | cbwd3 | coding | upstream | 192190 | 69191221 ~ 69206345 (+) |
| LOC118937380 | NA | coding | upstream | 474226 | 68918586 ~ 68924491 (+) |
| LOC110535101 | LOC106580561 | coding | upstream | 551202 | 68687221 ~ 68847333 (+) |
| ercc8 | ercc8 | coding | downstream | 35085 | 69435319 ~ 69456823 (+) |
| LOC110536303 | LOC106580590 | coding | downstream | 70816 | 69471050 ~ 69484931 (+) |
| agpat9l | LOC106580584 | coding | downstream | 241855 | 69642089 ~ 69655067 (+) |
| LOC110536313 | LOC106580580 | coding | downstream | 297727 | 69696110 ~ 69705172 (+) |
| sb:cb288 | NA | coding | downstream | 305100 | 69705334 ~ 69711411 (+) |
| G1011039 | NA | non-coding | upstream | 46265 | 69352037 ~ 69352270 (+) |
| G1011034 | NA | non-coding | upstream | 54088 | 69344132 ~ 69344447 (+) |
| G1011033 | NA | non-coding | upstream | 70798 | 69327197 ~ 69327737 (+) |
| G1011032 | NA | non-coding | upstream | 71520 | 69326580 ~ 69327015 (+) |
| G1011031 | NA | non-coding | upstream | 72572 | 69325727 ~ 69325963 (+) |
| G1011109 | LOC106580587 | non-coding | downstream | 123186 | 69523420 ~ 69524131 (+) |
| G1011315 | LOC106580585 | non-coding | downstream | 190359 | 69590593 ~ 69592141 (+) |
| G1011318 | NA | non-coding | downstream | 194814 | 69595048 ~ 69595470 (+) |
| G1011339 | NA | non-coding | downstream | 235385 | 69635619 ~ 69635837 (+) |
| G1011340 | NA | non-coding | downstream | 235935 | 69636169 ~ 69636381 (+) |
| LOC110536291 | LOC106580540 | other | upstream | 811493 | 68584627 ~ 68587134 (+) |
| G1008017 | NA | other | upstream | 2516284 | 66881799 ~ 66882251 (+) |
| LOC110536267 | LOC106580513 | other | upstream | 2600318 | 66774135 ~ 66798230 (+) |
| G1007556 | NA | other | upstream | 2985600 | 66412574 ~ 66412935 (+) |
| G1011336 | NA | other | downstream | 233267 | 69633501 ~ 69633876 (+) |
| LOC110536323 | LOC106580573 | other | downstream | 504714 | 69904948 ~ 69917078 (+) |
| LOC110536331 | LOC106580567 | other | downstream | 601235 | 70001416 ~ 70009325 (+) |
| G1011531 | NA | other | downstream | 618869 | 70019103 ~ 70019906 (+) |
