LOC110536304 (LOC106585162)


Basic Information

Item Value
gene id LOC110536304
gene name LOC106585162
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69501897 ~ 69520334 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475401.2
TAAACTCAATCCCCTATTCTCTCACGAGAATTCACCAAGTTTCCGCTGTTGTGTATATGTCTGGAAACATGGCGGCACGCATCCGTGGCCGCTCTATCCGAAGTCTTCGGATGCGAGGTGGGTAGCCATACGATGTCCCTGTTGTCTTGGACAGGTCGGAATGACAGCGGGGAAGATCTGGAGAAGAGAACCTTCTGACAACTTGTGTGAAATCCTTCAAAATGTCGTCAAGCCACACGGCATCACCAACATGCAGAAACTGGGCCACCTGAACAATTTCATAAAGgATAAAGGAGAAGTTTCCCTATGCGTTTGATATGTGTTTGTACTCTGAGGTGTCTCACTTGCTGGCCCACTGTatgttccgcctgccatctcgacGCTTCATACAGGAACTCTTTCAGGATGTACACTTCATACCAATGTACGAGGAAGCAGAAGCGATCCTGTCGATGCCATCAAAGCCTGTCGGAGTGGATATAGACTGTCCCACAGAATCCTGATCATTGTCCccatcctcttccccctctccctgtttAGACGACCCCCCTCCCTCCAACCTTCACATAGAGATAACGACAGCAATGGAGTGGGAGAATAGAGGGAGCGGCAGgtaacctggtggttagagcattggactattaaccaaaaggttgctagtttgaatccccgagctgacaaggtcaaaatctgtctttctgcccctgaacaaggcagttaacccactgttcttaggccgtcattgaaaataggaatttgttcttaactgacttgcctagttaaataaaggtaaaacaaaaaaaagggaTGAAGAGTATGGGGGACGGGGCTAAAACAGGATGGGATACCCAGAGTATGTTGCTGAAGTTTAGGATGGAGGGAGCACggatgagaggagtggaggatCATGGATGTTAAAGAacaagaaagaggaaaagggtTTCCCTCCCATCGCTTGACAAAGAGGAGATGGACTGTCTGAGAACAAATGAAACCTGACACACCTAGTCCTGTTCCTGCCCATCTCCAACAGGGGGAGCAGTTTTCCCAAAATAGTATTTTCAGAAGCTCAACCCGACGACGCTCAACCCGGTGACACACAACCCTGAGCAACAGACTACTTATCACATCCCATTGACTTAAACACACATTGGATGAATCATGACGAAGTCTGTCTGTTTTCAGTGTACCTTTGCTCTGGTGCATGCTGATATGAAATGAAAAGGGGATGTTTAGTCCATCCCAGTCAGTGCTGGTcccatcctcttctccttccATATGGAAACACTACAGAAGGCTCCAGGAGCCTCCCTCATAGTCATACCCTCAGTCTGTTTCTGCTGTGACATCATGAGTTTATCAATTTCAACTCTACTCAAAAGACTCATTCTAGTTCAAATAACTGTTGTTCTATTCATTTCTACAGACAATCAAACATCAGTagtgttttttaaaattatttaacCATCACTCTCTTCCCATCCGGACACATAAAACATAACTTCTGTGCCTTGCTGTCTGTCAAGCCTTCCTCTGTCTCTGACCCTGGTCTGGAAACACACTGTTGTTGACATTGCCAACAGCTGTTTTCTCTCACCTTTCATTGGTTATTTTTTATGTTAAACTGCCATGAAATATGCTGGTACGTGATGTGTAGTTTATTGTTTCATTGATTGTACATATTCAAAGAGAGAGAAGCTACAGTACCTAGTTGCCCTTCCCAAACCCTACCTCTGTGCTTTGTTCTAACTGCATGTGCAAACAGCATATTGAAATATTACATCATCATTGTCACTTTTCTTCTGGAAATTATTAATGTATTTCTTCCAAATGCTTCTAATACTTTGATTGTCTTAAATCATAATAGGTTGTCATCACTGCTTTACAAACTGGGGAAAGTAACGGTCCCTAAGTTATTTTCACAATGCAACATTGCTGTTTATCATTGGCTGAGATGAGAGGGACAGGTAGATGTGATCGTTTATGGATTGGCATAAGATTTTCATGGGGAAAAGTTTCATTTTCTATTAGTTTGTTTTGCTATTATGCTGCTACACATGTGGACTCATATGGATGATTTATAGATTGGCTGAGTGATGTGAGAATAATTTATTATATATTTGTACAGTagcggagagagatgagagaagaaaaaaatgtattttttccttGATACTGTATTCATAATTTCAAATGTTTTTGTTGCCTAAATCGTGGTTTCCCTTGTGTAATGTGGGTCGtgtgttttggggtatttctatagAAGCATACACTCTATCAAAGGGATGCATTGTTCataaaaactaaaatcatgaacAATCCAAA
>TU1150255
GTCTGGAAACATGGCGGCACGCATCCGTGGCCGCTCTATCCGAAGTCTTCGGATGCGAGGTGGGTAGCCATACGATGTCCCTGTTGTCTTGGACAGGTCGGAATGACAGCGGGGAAGATCTGGAGAAGAGAACCTTCTGACAACTTGTGTGAAATCCTTCAAAATGTCGTCAAGCCACACGGCATCACCAACATGCAGAAACTGGGCCACCTGAACAATTTCATAAAGgATAAAGGAGAAGTTTCCCTATGCGTTTGATATGTGTTTGTACTCTGAGGTGTCTCACTTGCTGGCCCACTGTatgttccgcctgccatctcgacGCTTCATACAGGAACTCTTTCAGGATGTACACTTCATACCAATGTACGAGGAAGCAGAAGCGATCCTGTCGATGCCATCAAAGCCTGTCGGAGTGGATATAGACTGTCCCACAGAATCCTGATCATTGTCCccatcctcttccccctctccctgtttAGACGACCCCCCTCCCTCCAACCTTCACATAGAGATAACGACAGCAATGGAGTGGGAGAATAGAGGGAGCGGCAGgtaacctggtggttagagcattggactattaaccaaaaggttgctagtttgaatccccgagctgacaaggtcaaaatctgtctttctgcccctgaacaaggcagttaacccactgttcttaggccgtcattgaaaataggaatttgttcttaactgacttgcctagttaaataaaggtaaaacaaaaaaaagggaTGAAGAGTATGGGGGACGGGGCTAAAACAGGATGGGATACCCAGAGTATGTTGCTGAAGTTTAGGATGGAGGGAGCACggatgagaggagtggaggatCATGGATGTTAAAGAacaagaaagaggaaaagggtTTCCCTCCCATCGCTTGACAAAGAGGAGATGGACTGTCTGAGAACAAATGAAACCTGACACACCTAGTCCTGTTCCTGCCCATCTCCAACAGGGGGAGCAGTTTTCCCAAAATAGTATTTTCAGAAGCTCAACCCGACGACGCTCAACCCGGTGACACACAACCCTGAGCAACAGACTACTTATCACATCCCATTGACTTAAACACACATTGGATGAATCATGACGAAGTCTGTCTGTTTTCAGTGTACCTTTGCTCTGGTGCATGCTGATATGAAATGAAAAGGGGATGTTTAGTCCATCCCAGTCAGTGCTGGTcccatcctcttctccttccATATGGAAACACTACAGAAGGCTCCAGGAGCCTCCCTCATAGTCATACCCTCAGTCTGTTTCTGCTGTGACATCATGAGTTTATCAATTTCAACTCTACTCAAAAGACTCATTCTAGTTCAAATAACTGTTGTTCTATTCATTTCTACAGACAATCAAACATCAGTagtgttttttaaaattatttaacCATCACTCTCTTCCCATCCGGACACATAAAACATAACTTCTGTGCCTTGCTGTCTGTCAAGCCTTCCTCTGTCTCTGACCCTGGTCTGGAAACACACTGTTGTTGACATTGCCAACAGCTGTTTTCTCTCACCTTTCATTGGTTATTTTTTATGTTAAACTGCCATGAAATATGCTGGTACGTGATGTGTAGTTTATTGTTTCATTGATTGTACATATTCAAAGAGAGAGAAGCTACAGTACCTAGTTGCCCTTCCCAAACCCTACCTCTGTGCTTTGTTCTAACTGCATGTGCAAACAGCATATTGAAATATTACATCATCATTGTCACTTTTCTTCTGGAAATTATTAATGTATTTCTTCCAAATGCTTCTAATACTTTGATTGTCTTAAATCATAATAGGTTGTCATCACTGCTTTACAAACTGGGGAAAGTAACGGTCCCTAAGTTATTTTCACAATGCAACATTGCTGTTTATCATTGGCTGAGATGAGAGGGACAGGTAGATGTGATCGTTTATGGATTGGCATAAGATTTTCATGGGGAAAAGTTTCATTTTCTATTAGTTTGTTTTGCTATTATGCTGCTACACATGTGGACTCATATGGATGATTTATAGATTGGCTGAGTGATGTGAGAATAATTTATTATATATTTGTACAGTagcggagagagatgagagaagaaaaaaatgtattttttccttGATACTGTATTCATAATTTCAAATGTTTTTGTTGCCTAAATCGTGGTTTCCCTTGTGTAATGTGGGTCGtgtgttttggggtatttctatagAAGCATACACTCTATCAAAGGGATGCATTGTTCataaaaactaaaatcatgaac
>TU1150256
GTCTGGAAACATGGCGGCACGCATCCGTGGCCGCTCTATCCGAAGTCTTCGGATGCGAGGTGGGTAGCCATACGATGTCCCTGTTGTCTTGGACAGGTCGGAATGACAGCGGGGAAGATCTGGAGAAGAGAACCTTCTGACAACTTGTGTGAAATCCTTCAAAATGTCGTCAAGCCACACGGCATCACCAACATGCAGAAACTGGGCCACCTGAACAATTTCATAAAGgATAAAGGAGAAGTTTCCCTATGCGTTTGATATGTGTTTGTACTCTGAGGTGTCTCACTTGCTGGCCCACTGTatgttccgcctgccatctcgacGCTTCATACAGGAACTCTTTCAGGATGTACACTTCATACCAATGTACGAGGAAGCAGAAGCGATCCTGTCGATGCCATCAAAGCCTGTCGGAGTGGATATAGACTGTCCCACAGAATCCTGATCATTGTCCccatcctcttccccctctccctgtttAGACGACCCCCCTCCCTCCAACCTTCACATAGAGATAACGACAGCAATGGAGTGGGAGAATAGAGGGAGCGGCAGgtaacctggtggttagagcattggactattaaccaaaaggttgctagtttgaatccccgagctgacaaggtcaaaatctgtctttctgcccctgaacaaggcagttaacccactgttcttaggccgtcattgaaaataggaatttgttcttaactgacttgcctagttaaataaaggtaaaacaaaaaaaagggaTGAAGAGTATGGGGGACGGGGCTAAAACAGGATGGGATACCCAGAGTATGTTGCTGAAGTTTAGGATGGAGGGAGCACggatgagaggagtggaggatCATGGATGTTAAAGAacaagaaagaggaaaagggtTTCCCTCCCATCGCTTGACAAAGAGTCCTGTTCCTGCCCATCTCCAACAGGGGGAGCAGTTTTCCCAAAATAGTATTTTCAGAAGCTCAACCCGACGACGCTCAACCCGGTGACACACAACCCTGAGCAACAGACTACTTATCACATCCCATTGACTTAAACACACATTGGATGAATCATGACGAAGTCTGTCTGTTTTCAGTGTACCTTTGCTCTGGTGCATGCTGATATGAAATGAAAAGGGGATGTTTAGTCCATCCCAGTCAGTGCTGGTcccatcctcttctccttccATATGGAAACACTACAGAAGGCTCCAGGAGCCTCCCTCATAGTCATACCCTCAGTCTGTTTCTGCTGTGACATCATGAGTTTATCAATTTCAACTCTACTCAAAAGACTCATTCTAGTTCAAATAACTGTTGTTCTATTCATTTCTACAGACAATCAAACATCAGTagtgttttttaaaattatttaacCATCACTCTCTTCCCATCCGGACACATAAAACATAACTTCTGTGCCTTGCTGTCTGTCAAGCCTTCCTCTGTCTCTGACCCTGGTCTGGAAACACACTGTTGTTGACATTGCCAACAGCTGTTTTCTCTCACCTTTCATTGGTTATTTTTTATGTTAAACTGCCATGAAATATGCTGGTACGTGATGTGTAGTTTATTGTTTCATTGATTGTACATATTCAAAGAGAGAGAAGCTACAGTACCTAGTTGCCCTTCCCAAACCCTACCTCTGTGCTTTGTTCTAACTGCATGTGCAAACAGCATATTGAAATATTACATCATCATTGTCACTTTTCTTCTGGAAATTATTAATGTATTTCTTCCAAATGCTTCTAATACTTTGATTGTCTTAAATCATAATAGGTTGTCATCACTGCTTTACAAACTGGGGAAAGTAACGGTCCCTAAGTTATTTTCACAATGCAACATTGCTGTTTATCATTGGCTGAGATGAGAGGGACAGGTAGATGTGATCGTTTATGGATTGGCATAAGATTTTCATGGGGAAAAGTTTCATTTTCTATTAGTTTGTTTTGCTATTATGCTGCTACACATGTGGACTCATATGGATGATTTATAGATTGGCTGAGTGATGTGAGAATAATTTATTATATATTTGTACAGTagcggagagagatgagagaagaaaaaaatgtattttttccttGATACTGTATTCATAATTTCAAATGTTTTTGTTGCCTAAATCGTGGTTTCCCTTGTGTAATGTGGGTCGtgtgttttggggtatttctatagAAGCATACACTCTATCAAAGGGATGCATTGTTCataaaaactaaaatcatgaac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475401.2 False 2325 mRNA 0.42 5 69501897 69520334
TU1150255 False 2259 lncRNA 0.42 5 69501905 69520276
TU1150256 True 2217 lncRNA 0.42 6 69501905 69520276

Neighbor

gene id symbol gene type direction distance location
LOC118937381 NA coding downstream 22949 69473936 ~ 69478948 (-)
LOC110536301 NA coding downstream 97691 69400550 ~ 69404206 (-)
LOC110536299 zswim6 coding downstream 106855 69306948 ~ 69395042 (-)
LOC110536298 tmem252 coding downstream 231447 69268300 ~ 69270450 (-)
LOC110535102 LOC106580556 coding downstream 314638 69104104 ~ 69187259 (-)
LOC110536305 LOC106580587 coding upstream 779 69521113 ~ 69532109 (-)
c11h5orf34 cssa20h5orf34 coding upstream 13450 69533784 ~ 69544398 (-)
LOC110536307 paip1 coding upstream 24471 69544805 ~ 69555991 (-)
LOC110535103 fgf10 coding upstream 39344 69559666 ~ 69573629 (-)
LOC110536308 LOC106580585 coding upstream 61509 69581843 ~ 69627090 (-)
G1011243 NA non-coding downstream 13471 69487475 ~ 69488426 (-)
G1011248 NA non-coding downstream 46602 69453943 ~ 69455295 (-)
G1011175 NA non-coding downstream 148753 69352905 ~ 69353144 (-)
G1011174 NA non-coding downstream 149853 69351809 ~ 69352044 (-)
G1011172 NA non-coding downstream 152196 69349378 ~ 69349701 (-)
G1011587 NA non-coding upstream 113829 69634163 ~ 69634630 (-)
G1011588 NA non-coding upstream 118818 69639152 ~ 69639375 (-)
G1011616 NA non-coding upstream 170559 69690893 ~ 69691189 (-)
G1011618 NA non-coding upstream 174190 69694524 ~ 69694733 (-)
G1011014 NA other downstream 195469 69305336 ~ 69306428 (-)
G1010922 NA other downstream 382411 69116507 ~ 69119486 (-)
G1010443 NA other downstream 813935 68687257 ~ 68687962 (-)
G1009720 NA other downstream 1530569 67971071 ~ 67971328 (-)
G1007506 NA other downstream 3128948 66372642 ~ 66372949 (-)
G1012814 NA other upstream 1364142 70884476 ~ 70890991 (-)
G1013669 NA other upstream 1976974 71497308 ~ 71515434 (-)
G1013960 NA other upstream 2475747 71996081 ~ 71996688 (-)
G1014411 NA other upstream 2838951 72359285 ~ 72359505 (-)
G1014639 NA other upstream 2926320 72446654 ~ 72449340 (-)

Expression


Co-expression Network