XLOC_028455 (creb3l2)


Basic Information

Item Value
gene id XLOC_028455
gene name creb3l2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 4712410 ~ 4751983 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055229
AATTCCCCGCCCCCAAATTCCTGCTCGTCTGTGAAGGGGCGACATTTCTCAAGGAAGCCGAGAGGAAAGTTCCGTGAACATTGGCGACAGACGCTCAACTTATGATCAACTTTTAGCTGACTGTAAATTAGTCTTTCTGAATCGCGGTCTGGCGAGTAATTTGACGGATACGCTGATAAACAGCCGTTTCTGGGGTCGTTGAAGCGACGCTGCGCCTCCGTGACGATGGAAATAATGGATAGCGGAGAGCCGTTTTTACAATGGGACAAAAATCTCAGCGAATTGTCAGAAGCCggtgaaaatgacattttatacaGCACTCACTTCACGGACCTGCTGGATGATTTGTCCCAGGAGGCTTTGCTCGGGCAGCTGTTGAGCGACCCGTTTCTGTCGGGCCGTGGAGATGCGATGGACACTGAGGAGGAGCTGACCCGTGCGTCTCCAGTGCCACCACACATCCAGGCTGAACACAGTTACTCTCTGTGCGGAGACTCACGCCCACAGTCGCCGCTCTCTCATTTGCCTGGAGAACCCGGCAGCGACGCTGCTGATTCAGAGTCAGACGAGTGGCCAATGGAGCAGGAGGATAAAGGAATAAAGATGGAGCCTCTACTCTGTGTCCCGCTGCCTGCTCTGACCCTCACAGTGACCCCTGCAGGCTCTGCCCCTGAGcctgtgattgacagctgtgattccGCCCAATCCCTGAGTCTCCCTCAGGTGAAGGAGGACAGCAACAGTCCACAGATTAAACTGGAGCCCCATGAAGTCGATCAGTTCTTGAACCTCTCGcctaaagGTCTGGAGTGTCTTCAGATGCCACCAACTCCTCCCAGCTCAGTGGGAAGTGATTCGGAGGGCAGTCAGAGTCCCGTTCACCCCTGCGCTCCTGCCAGTCCCACACAGACCCCCGCTGTCCTCAAGGTGGCGCCGCGAGCCCCTTCATCTCTGTCCAGCTCTCCCCTGCTGACCGCTCCACATAAACTGCAGGGCTCTGGTCCCCTTTTATTGACCGAGGAGGAGAAAAGGACCCTCATTGCTGAAGGATACCCCGTGCCCACCAAACTGCCCCTGTCCAAGGCTGAGGAGAAAGCACTGAAGAAGATCCGCAGAAAGATCAAGAACAAGATTTCAGCACAGGAGAGTCGCAGGAAAAAGAAAGAGTATGTGGATGCCTTAGAGAAGAAGGTGGAGACGTGCTCTAACGAGAACCACGAGTTACGCAGGAAAGTGGAAAACCTGGAGTGCACTAACAAGTCTCTGCTGCAGCAGCTGCACTCTCTGCAGGCGGTGGTGGCAGGAAAGGTCCCGCGGTCCTGCAGGGTGACGGGCACCCAGACCTCCACGTGCCTCATGGTGGTGGTTCTGTGTTTTTCGCTCTTCTTGGGGAGCTTCTATCCAGGCCTGAGCCCATGCTCCTCCATCACCAAAGCAGATCTGAGCAGAGAGATCTCCATACACGACTCCTACACCACCACAGTGAAGTCCCGGAGCCTGTTGTCCATTCAGGAGCCCGGGGGTCTGGACGAGCCTCACCCCATCGGTCTGGGAGGTGAATATCCAGAATGGGATCGTCAGGCTGACGTAATGGCAGCCTGGCGCTTCGAGCAGCAGCACAAGGAAGAAGAGGCGGAGCTACACAAAGCAGAGCACCGCCCACTTTTACTCAGCACCAATGAAACACATGCGCAAAAAGCCATTCTCATAGACCTCCACACGCACAGGTCAAATGAGACAGCAAAAGTCATACAGTTGGACAGGACTGTCAACGAGACGTCATGAGATTAAGATCTACTGCGCTGGGGCGATAGGCTCTGTATTTATAGACATGCTTTATaaaagatagttcacctcaaaaagtTAAAATGCAGAGGAgaatatttacaaaatgtttatgatggaaaccagcagccattgacttctattgtaaaaatgctattgtACTTAATAGCTAGCAAAttctaacattcttcagtatgtttcttttttttttacgttcAACAGAAACTCGAACACAAGTATAATCAATAAATGagtcgtttttgggtgaactatctctttaattattattttacttagtccttttttatttaataaaccagaaaaataaatagagctgggcaaagattaattgcatccaaaatgaaagtttgttttgacttaaTATATGCGTGTGCTAGGTATATatttgagaatttttaaaaatgttaattttacagTGGatgagagagcttaacgtgctgcaatttaagaaagtaGATGCACTTACAAATAATgctagcaaattaagaaaagttcattggtttgacagcacacgtgccgcaaatcctcacaatgcataTAGACATAAAAAAAGTGCTGCGTGTTCTCACAACGCAGACAAATGAAGTAAACACGCTACAAattttcacaacgcaaacaaattaataaaatgtgctacatttcctcacaacacaaacaaatcaagAAAATGCGCTACATCTTCGCACAACACAAACTAATTAAGAAAATGCTCTGCACTCTcgcaacgcaaacaaattaagaaaacgcGCTACATTTTTTCTCAAGGCAAACAAATGAAGTAAAGGCactacattttctcacaacgcaaactaAATAAACGTGCTACAATTTtttacaacgcaaacaaattaataaaacagctacattgtctTGCAACGCAAACAAATGAAGAAAATTtgctacattttctcacaacgcaaacaaatcaGGAAAGCGTGCTACATCTTCACACAATGCGAACAAATTaagaaaacgcactgcattttttcacaacgcaaactaattaaaaaaatgtctgcacTTTCTCTAAACGCAAAAAAATTAAGAAAGCGTGCAACATTTTCTCAAAACGCAAACAAATGAAGAAAACACTACATTTTCACAAAACGCAAACTAATTAAAAAAGGTCTGCACTTTCTCAAAACGCAAACAAACTAAGAAAACGTGCTACATTTTTTCACAAggcaaacaaatttaaaaatgctctgcattttctcacaacacaaacaaatgaagaaaacGCGCTACATTTTGtcaaaatgcaaacaaatgtaaaaaatgtctGCACTttctcaaaacacaaacaaatgaagaaaacGCGCTACAttttttcacaacgcaaacaaattgtAAAACGGTACATTTTCTCACagcacaaacaaattaagaaaacgcTATATTTTCTCAAAATGCAATCACATTGCAAAAATGCAAATATgttttcacacaacgcaaacaaagTAAGAAAACGCTGACTTTttccacaacacaaacaaattacgaAAAAGCgatgcattttcacacaacgcaaacaatttaagAAAATGCGCTACATTTTCTctcacattttatttgtttgtgttgtgggaAAATTGATTaagattaatttaaattaaaattttaaatttaattgaaaattaattGCTATTCTTAATTTGCTagtgtttttgtaattgcatatgTTTTtctaaattgcagcacattaagcctTACCAGCCACGGTATAaatggatataaaatatatatgtatatgatacaaattatatgttAACGGAAAATATCTATGCAACAAAACAGTATTGATTGTATGTATGTTTGTCAATCACATAtacataacaaatatatataattcacacacattaaaacaattattgtattgtattaaaacaaacttctattttggatgtgattaattacgactaatctttgcccagcacaaaaaaaaaagacaaatatatttttactcCATTCCATAGTCCATTTTGATACTTCATATACACTgttctttttatatattaacatataccttgatttatttcttttaaggttttcattatttttaattatttgcctGTTTGCCCCATGCTACTGAGGATATGTGTGGTAATATATGAAATCTGTCTGTCGTATGTAGCATGTCAATCAAAATCCAAAGATGAAAACAATTGGCTAAAAGCCCTCTGTTTACAGTACAAACTTGtctgaatatgtaaatatttgcGCCGTTGTAAGTATGTTGGGAGAGAAACGAATTGTGTGATTGAGATGTTGGTCAAAAAAGAGCCACAATATGGACGTGACATGAAAAGGAACGGATGCTCTCCAGCCCGCGCTCCCTTTTTTATTCGGTTTAAGGTCTTTAAAGGACAGATGGCCCTTTTTGTCCTCATCTGGCCACCATCCAAACCCCCGTCTGCGCTCTTTTGGGAGTAAAAGACGCTCGCTGAAAAATCTGGTGTTCGCTGGGCCAGATATGAACGCTTTTGACAAGCCATGTGCATCCCAACTCACTTGCACTGCGTCCCCCATTGAACTGTTAtttattacttctttttttttttaagcatgccTGCAATACTTCTTCAGTCCTGCAAACAAGAGCATTTTGAAGGAGGTGGATTGGTCCTGATGTGACACATTTGTCAGTGTTTAATGATGTGTTTTTTGCTCTTATAAGATGCAGTGTGTCTTAATTACGTTACATTTTCATTGCGTCACAGTTTCGGGCTCTTAAAATGATCTTCCTGAAATCACTCtgccttgttttgtttttttttgtcctgttttctgcaaagcaaataaatattttcctTAGTAAAAGCATTG
>TCONS_00055228
AATTCCCCGCCCCCAAATTCCTGCTCGTCTGTGAAGGGGCGACATTTCTCAAGGAAGCCGAGAGGAAAGTTCCGTGAACATTGGCGACAGACGCTCAACTTATGATCAACTTTTAGCTGACTGTAAATTAGTCTTTCTGAATCGCGGTCTGGCGAGTAATTTGACGGATACGCTGATAAACAGCCGTTTCTGGGGTCGTTGAAGCGACGCTGCGCCTCCGTGACGATGGAAATAATGGATAGCGGAGAGCCGTTTTTACAATGGGACAAAAATCTCAGCGAATTGTCAGAAGCCggtgaaaatgacattttatacaGCACTCACTTCACGGACCTGCTGGATGATTTGTCCCAGGAGGCTTTGCTCGGGCAGCTGTTGAGCGACCCGTTTCTGTCGGGCCGTGGAGATGCGATGGACACTGAGGAGGAGCTGACCCGTGCGTCTCCAGTGCCACCACACATCCAGGCTGAACACAGTTACTCTCTGTGCGGAGACTCACGCCCACAGTCGCCGCTCTCTCATTTGCCTGGAGAACCCGGCAGCGACGCTGCTGATTCAGAGTCAGACGAGTGGCCAATGGAGCAGGAGGATAAAGGAATAAAGATGGAGCCTCTACTCTGTGTCCCGCTGCCTGCTCTGACCCTCACAGTGACCCCTGCAGGCTCTGCCCCTGAGcctgtgattgacagctgtgattccGCCCAATCCCTGAGTCTCCCTCAGGTGAAGGAGGACAGCAACAGTCCACAGATTAAACTGGAGCCCCATGAAGTCGATCAGTTCTTGAACCTCTCGcctaaagGTCTGGAGTGTCTTCAGATGCCACCAACTCCTCCCAGCTCAGTGGGAAGTGATTCGGAGGGCAGTCAGAGTCCCGTTCACCCCTGCGCTCCTGCCAGTCCCACACAGACCCCCGCTGTCCTCAAGGTGGCGCCGCGAGCCCCTTCATCTCTGTCCAGCTCTCCCCTGCTGACCGCTCCACATAAACTGCAGGGCTCTGGTCCCCTTTTATTGACCGAGGAGGAGAAAAGGACCCTCATTGCTGAAGGATACCCCGTGCCCACCAAACTGCCCCTGTCCAAGGCTGAGGAGAAAGCACTGAAGAAGATCCGCAGAAAGATCAAGAACAAGATTTCAGCACAGGAGAGTCGCAGGAAAAAGAAAGAGTATGTGGATGCCTTAGAGAAGAAGGTGGAGACGTGCTCTAACGAGAACCACGAGTTACGCAGGAAAGTGGAAAACCTGGAGTGCACTAACAAGTCTCTGCTGCAGCAGCTGCACTCTCTGCAGGCGGTGGTGGCAGGAAAGGTCCCGCGGTCCTGCAGGGTGACGGGCACCCAGACCTCCACGTGCCTCATGGTGGTGGTTCTGTGTTTTTCGCTCTTCTTGGGGAGCTTCTATCCAGGCCTGAGCCCATGCTCCTCCATCACCAAAGCAGATCTGAGCAGAGAGATCTCCATACACGACTCCTACACCACCACAGTGAAGTCCCGGAGCCTGTTGTCCATTCAGGAGCCCGGGGGTCTGGACGAGCCTCACCCCATCGGTCTGGGAGGTGAATATCCAGAATGGGATCGTCAGGCTGACGTAATGGCAGCCTGGCGCTTCGAGCAGCAGCACAAGGAAGAAGAGGCGGAGCTACACAAAGCAGAGCACCGCCCACTTTTACTCAGCACCAATGAAACACATGCGCAAAAAGCCATTCTCATAGACCTCCACACGCACAGGTCAAATGAGACAGCAAAAGTCATACAGTTGGACAGGACTGTCAACGAGACGTCATGAGATTAAGATCTACTGCGCTGGGGCGATAGGCTCTGTATTTATAGACATGCTTTATaaaagatagttcacctcaaaaagtTAAAATGCAGAGGAgaatatttacaaaatgtttatgatggaaaccagcagccattgacttctattgtaaaaatgctattgtACTTAATAGCTAGCAAAttctaacattcttcaTCCTGCAAACAAGAGCATTTTGAAGGAGGTGGATTGGTCCTGATGTGACACATTTGTCAGTGTTTAATGATGTGTTTTTTGCTCTTATAAGATGCAGTGTGTCTTAATTACGTTACATTTTCATTGCGTCACAGTTTCGGGCTCTTAAAATGATCTTCCTGAAATCACTCtgccttgttttgtttttttttgtcctgttttctgcaaagcaaataaatattttcctTAGTAAAAGCATTG
>TCONS_00055230
TTCCCCGCCCCCAAATTCCTGCTCGTCTGTGAAGGGGCGACATTTCTCAAGGAAGCCGAGAGGAAAGTTCCGTGAACATTGGCGACAGACGCTCAACTTATGATCAACTTTTAGCTGACTGTAAATTAGTCTTTCTGAATCGCGGTCTGGCGAGTAATTTGACGGATACGCTGATAAACAGCCGTTTCTGGGGTCGTTGAAGCGACGCTGCGCCTCCGTGACGATGGAAATAATGGATAGCGGAGAGCCGTTTTTACAATGGGACAAAAATCTCAGCGAATTGTCAGAAGCCggtgaaaatgacattttatacaGCACT

Function

symbol description
creb3l2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Acts upstream of or within regulation of ER to Golgi vesicle-mediated transport and regulation of extracellular matrix constituent secretion. Predicted to be located in endoplasmic reticulum. Is expressed in cranial cartilage and pectoral fin. Orthologous to human CREB3L2 (cAMP responsive element binding protein 3 like 2).

GO:

id name namespace
GO:0034976 response to endoplasmic reticulum stress biological_process
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0060628 regulation of ER to Golgi vesicle-mediated transport biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0002062 chondrocyte differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0006986 response to unfolded protein biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0003330 regulation of extracellular matrix constituent secretion biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0035497 cAMP response element binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1542 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Acts upstream of or within regulation of ER to Golgi vesicle-mediated transport and regulation of extracellular matrix constituent secretion. Predicted to be located in endoplasmic reticulum. Is expressed in cranial cartilage and pectoral fin. Orthologous to human CREB3L2 (cAMP responsive element binding protein 3 like 2).

Ensembl:

ensembl_id ENSDARG00000063563

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055229 False 4632 mRNA 0.41 11 4712410 4751983
TCONS_00055228 False 2217 mRNA 0.51 12 4712410 4751983
TCONS_00055230 True 319 mRNA 0.48 1 4751663 4751981

Neighbor

gene id symbol gene type direction distance location
XLOC_028454 DGKI coding downstream 5517 4626794 ~ 4706893 (-)
XLOC_028453 CABZ01020840.1 coding downstream 100294 4601815 ~ 4612116 (-)
XLOC_028452 rassf3 coding downstream 120123 4540223 ~ 4592287 (-)
XLOC_028451 zgc:194209 coding downstream 177221 4526248 ~ 4535189 (-)
XLOC_028450 FP102892.1 coding downstream 195902 4514438 ~ 4516508 (-)
XLOC_028456 ssbp1 coding upstream 639 4752622 ~ 4756349 (-)
XLOC_028457 si:ch211-258f14.2 coding upstream 6018 4758001 ~ 4780667 (-)
XLOC_028458 zgc:162331 coding upstream 30738 4782721 ~ 4795205 (-)
XLOC_028459 coa6 coding upstream 80161 4832144 ~ 4834617 (-)
XLOC_028460 ndufa5 coding upstream 178423 4930406 ~ 4932619 (-)
XLOC_028446 CU468826.1 non-coding downstream 337706 4321168 ~ 4374704 (-)
XLOC_028443 NA non-coding downstream 483255 4178834 ~ 4229155 (-)
XLOC_028444 NA non-coding downstream 501946 4207590 ~ 4210464 (-)
XLOC_028442 NA non-coding downstream 548534 4162825 ~ 4163876 (-)
XLOC_028461 NA non-coding upstream 188484 4940467 ~ 4962892 (-)
XLOC_028462 NA non-coding upstream 210974 4962957 ~ 4967711 (-)
XLOC_028471 NA non-coding upstream 669763 5421746 ~ 5459469 (-)
XLOC_028472 NA non-coding upstream 676335 5428318 ~ 5441954 (-)
XLOC_028474 NA non-coding upstream 793019 5545002 ~ 5553182 (-)

Expression


Co-expression Network