LOC110536307 (paip1)


Basic Information

Item Value
gene id LOC110536307
gene name paip1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69544805 ~ 69555991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622033.2
AATATGTTGTAATATCCGTTCGAGAACATAAAGTAGCTGGCTTGCTAGTAAATATGGAAATGAGGGAGGGTGAGTGAGGCCAAACTAAATAATTCCGTAACAAGTGACTGGAATTGCCAAACCACCTACGTTTTTTCTTTTGCGCCTCACCGAAAAGGTCATAACACAAAAAAAGCAACAGAGATGACTGAGAATTTCGACCGAGCTCCAGGCGCTGGTAGAGCCCATATAAAGCCAAGAAGCCCCGGCCTTGCAGATGTAGGAGACGGGGACGCCACATCTGTTTTCAACCAGCGTGAGCCTCTTCGGCAACCTCGGACTTCTCCACCTTTGACTGAGAACAACCCATACCATAGTGAAGCTATCGGCGGAGAAAGCAGAAGCCCAAGCAAACCCCACCAATTCATTCACAACCACAGCACTCCTGCCTCCAAAGTGAAAAGTGTGGACTCTCTGGTGAATACCTCCATTCTGTCAGCCAATGCACCGGAGTTCTACCCTGCTAGCTTCTCCCCCTATGAGGAATCAGTTTCGGAGGATGGCAGTGATGGCTATTATACTGAGATGACATTGGCTGAATTGGTTGAGGAGTTTCTCAGCTACCTAAACTCCTCGCCGGGGTCCTTTGAGACAGACATTGAGCACATGGTAAACATGCTGAACAGATGGGTTACTACTGAGGAGACGTTGCAAGAACTGGTGGAACTCATCTACACACAATCTACTGCTATCCCCAATTTCTCGTACACGGGGGCAAGGCTCTGTAACTTCCTGTCTCATAACCTCGTACTCAGCCCAGCAAGTGGAAACTTTCGTCAGCTTTTACTAAAACGgtgtcggACAGAGTATGAACAGAGGGACGTAGCGGTGCGAGGAGACCAGGAGACACAGAAGAAGTTCCAGGCCTATGTGCTCTTTCTGGGGGAGCTCTATCTCAGACTGGAGGTAAAGAGTGCAAAGGGGCCTCCGTCCCGAGCTGAGATCCTGCTAATCGCCCTGAGGGATCTGATGAATGCCCTCTTCTCTAACCCAGTGGATGGAAACCTCATCTGTGCTGTCAAACTGCTTAAGTTGACCGGCTCGGTTCTGGAGGATGcgtggaaagagaaagggaagtcTGACATGGACCAGCTAGTCCAGAGGATTGAGAACATTGTACTGGACACCCAGTGCAGCAGAGATGtgaagcagatgttattgcggctgGTGGAGCTGAGGTCTAGTAACTGGGGCAGAGtccatgctgctgctgcttctgatGCTACACCTGACAATGACCCCAACTACTTTATGAATGAGCCTACGTTCTACACTGCAGACGGCACTCCCTTCACAGCAGCCGACCCTGAATATTCAGAAAAATACCAGGAGATCCTGGATCGGGAAGACGACTGTTTCCCAGAGGACTGTGAAGAGAATGGAAATGAATCgtcattcaaTGACGAGGATGAGATGGACCCTGAGATCGAGGAAGCTTTTGAGAAGTTCTGCCTAGAGTCAGAGAGGAGACGACGATGAGAGCGCTGCGACAGACTGAGCTGGCACATACCTTTCGTGTTCGACATGCTGGAATGTTTGCGACTGGAAAAAATCTAAGAACtagccttttttttattttttgatacAGTTTGCTCTTCCTGGCAGTTCAGATTTTCTTCTGGATTTATGTTGGTTGGAAGATGGGGACAATCAACTGCATCAATAATCCGCTGAGTTATATGGACTGTTCTGAgtttgtattttttggggggtgggtggAGTTCCTTCTCTGCTTTTGCTTCTTTCAGAAACACTTATTTTCCTTGGTCTTCGTCTTAACGCCACAGGGAAAATGTGTGCTGTGGATTTGAAACACTGTTTACACAGCCACCATAAAAACCCAACTCTAGATATagaaagaaaaaatatttttcttCCTGTCCACACTCAGTGACCCATATCATATTTGCGCATTCACATTGATGTAGCCTCTGAAGTAGCACACAGATGCAATGCTCATTTCCTGTTACTTTCCATTTTGGGGTGGTTGTCCTGATAACTGCAGGCaattggcaacaaaaaaaaaaccacTAGAGCAAAAAATCTGATATGAGCGTCCAGAATGAGGGCACATAGATAATCCAGATGGTATCAGGAATTGAGGTCCACATATGGATGTGTTATTAATCTGAAGTCGAAAGACCAGATTCCATGGGGTTTTGTGGTGTTTACACATTAGGGAAAAGAGCAGATGGGTATCAGATGTGCAAGTAATTGACAATCTGAATGGGCTTCCTATGTAAACTTATCTCAACAGCAGAGTAGCAAACTAACTGTATAATCAATGACAGAACAGGGTTCAGCTCCAGGAATACTGCAAGGGCTTATTCAGTTGGAGGCGACACTCAGACTTGCAGATACAAATGTGATGTATAGAATGGACACTGCACTGCATCGGATGTTGCTACAGGGTACAAAAgggtaaataaatacagtattcaAGATAATTTTATGTTCTCTATAGTACATCAGCTTTCAGTGTATAGAATGTTGCACTACTGAACTCCAGGGCCATTTTGTTAATTATACATCTGTGAGGAGTTGGCCATTTATTTCAGTTTGATGGTCAACCACGCATTATCAGTCTATGCATTTTAAGGTGGTGGATTTGTGCAACTAACAAAGGAGTTTAAAGTACTGAATACAGGCAAGTGGCAGCAAACTGGCCATAAAAGAGAACACAAAAGTTACTTCAACTTTAGGGGTGTTTTTGTTCTCCCTTTTACAGGTTGAAAGTAGCGTTTTTAGAATGTGAAGTTATTTCACAGAATTGTTGAGTAGTACAGTTCTGTCTCTTGCTGGGAAGTGGGAACGGGGTCATTTTGAATCCAATTTGTCTGTTGAACAAGGCTTTAACACCTTTGCAGTCGGCAGTTTGGAACTGATTAAGAGACCGCTGCAACAGAAATCTCTCAGGACGGATTCCACAAtatattcttatttttttatcatcaattGATGAACCCCATACAAAGGAAATGTTTGTTTTATAAGTTTGTAAATAATATTCATAGTATTGTTTGTCTGCAATAAATTCTTCATAATATGAATATTTCACACACTAGTCTAGCTAGACATCCATCATATTGGCGACAGAtgttcatgtgaatattctaaaatctgcattgaaacaatatgcacattttcccactaGTGTTTGCCGCAAACAGACTTGTTGCTGATAAAAGTCAGTGCGTGATGACATGGTgtacacaaaatgtacttttttgcTGAAATTTTCAAGTACCAAATAAAATCTAAAGTTTAA
>XM_021622034.2
GAAATATGTTGTAATATCCGTTCGAGAACATAAAGTAGCTGGCTTGCTAGTAAATATGGAAATGAGGGAGGGTGAGTGAGGCCAAACTAAATAATTCCGTAACAAGTGACTGGAATTGCCAAACCACCTACGTTTTTTCTTTTGCGCCTCACCGAAAAGGTCATAACACAAAAAAAGCAACAGAGATGACTGAGAATTTCGACCGAGCTCCAGGCGCTGGTAGAGCCCATATAAAGCCAAGAAGCCCCGGCCTTGCAGATGTAGGAGACGGGGACGCCACATCTGTTTTCAACCAGCGTGAGCCTCTTCGGCAACCTCGGACTTCTCCACCTTTGACTGAGAACAACCCATACCATAGTGAAGCTATCGGCGGAGAAAGCAGAAGCCCAAGCAAACCCCACCAATTCATTCACAACCACAGCACTCCTGCCTCCAAAGTGAAAAGTGTGGACTCTCTGGTGAATACCTCCATTCTGTCAGCCAATGCACCGGAGTTCTACCCTGCTAGCTTCTCCCCCTATGAGGAATCAGTTTCGGAGGATGGCAGTGATGGCTATTATACTGAGATGACATTGGCTGAATTGGTTGAGGAGTTTCTCAGCTACCTAAACTCCTCGCCGGGGTCCTTTGAGACAGACATTGAGCACATGGTAAACATGCTGAACAGATGGGTTACTACTGAGGAGACGTTGCAAGAACTGGTGGAACTCATCTACACACAATCTACTGCTATCCCCAATTTCTCGTACACGGGGGCAAGGCTCTGTAACTTCCTGTCTCATAACCTCGTACTCAGCCCAGCAAGTGGAAACTTTCGTCAGCTTTTACTAAAACGgtgtcggACAGAGTATGAACAGAGGGACGTAGCGGTGCGAGGAGACCAGGAGACACAGAAGAAGTTCCAGGCCTATGTGCTCTTTCTGGGGGAGCTCTATCTCAGACTGGAGGTAAAGAGTGCAAAGGGGCCTCCGTCCCGAGCTGAGATCCTGCTAATCGCCCTGAGGGATCTGATGAATGCCCTCTTCTCTAACCCAGTGGATGGAAACCTCATCTGTGCTGTCAAACTGCTTAAGTTGACCGGCTCGGTTCTGGAGGATGcgtggaaagagaaagggaagtcTGACATGGACCAGCTAGTCCAGAGGATTGAGAACATTGTACTGGACACCCAGTGCAGCAGAATGAGCCTACGTTCTACACTGCAGACGGCACTCCCTTCACAGCAGCCGACCCTGAATATTCAGAAAAATACCAGGAGATCCTGGATCGGGAAGACGACTGTTTCCCAGAGGACTGTGAAGAGAATGGAAATGAATCgtcattcaaTGACGAGGATGAGATGGACCCTGAGATCGAGGAAGCTTTTGAGAAGTTCTGCCTAGAGTCAGAGAGGAGACGACGATGAGAGCGCTGCGACAGACTGAGCTGGCACATACCTTTCGTGTTCGACATGCTGGAATGTTTGCGACTGGAAAAAATCTAAGAACtagccttttttttattttttgatacAGTTTGCTCTTCCTGGCAGTTCAGATTTTCTTCTGGATTTATGTTGGTTGGAAGATGGGGACAATCAACTGCATCAATAATCCGCTGAGTTATATGGACTGTTCTGAgtttgtattttttggggggtgggtggAGTTCCTTCTCTGCTTTTGCTTCTTTCAGAAACACTTATTTTCCTTGGTCTTCGTCTTAACGCCACAGGGAAAATGTGTGCTGTGGATTTGAAACACTGTTTACACAGCCACCATAAAAACCCAACTCTAGATATagaaagaaaaaatatttttcttCCTGTCCACACTCAGTGACCCATATCATATTTGCGCATTCACATTGATGTAGCCTCTGAAGTAGCACACAGATGCAATGCTCATTTCCTGTTACTTTCCATTTTGGGGTGGTTGTCCTGATAACTGCAGGCaattggcaacaaaaaaaaaaccacTAGAGCAAAAAATCTGATATGAGCGTCCAGAATGAGGGCACATAGATAATCCAGATGGTATCAGGAATTGAGGTCCACATATGGATGTGTTATTAATCTGAAGTCGAAAGACCAGATTCCATGGGGTTTTGTGGTGTTTACACATTAGGGAAAAGAGCAGATGGGTATCAGATGTGCAAGTAATTGACAATCTGAATGGGCTTCCTATGTAAACTTATCTCAACAGCAGAGTAGCAAACTAACTGTATAATCAATGACAGAACAGGGTTCAGCTCCAGGAATACTGCAAGGGCTTATTCAGTTGGAGGCGACACTCAGACTTGCAGATACAAATGTGATGTATAGAATGGACACTGCACTGCATCGGATGTTGCTACAGGGTACAAAAgggtaaataaatacagtattcaAGATAATTTTATGTTCTCTATAGTACATCAGCTTTCAGTGTATAGAATGTTGCACTACTGAACTCCAGGGCCATTTTGTTAATTATACATCTGTGAGGAGTTGGCCATTTATTTCAGTTTGATGGTCAACCACGCATTATCAGTCTATGCATTTTAAGGTGGTGGATTTGTGCAACTAACAAAGGAGTTTAAAGTACTGAATACAGGCAAGTGGCAGCAAACTGGCCATAAAAGAGAACACAAAAGTTACTTCAACTTTAGGGGTGTTTTTGTTCTCCCTTTTACAGGTTGAAAGTAGCGTTTTTAGAATGTGAAGTTATTTCACAGAATTGTTGAGTAGTACAGTTCTGTCTCTTGCTGGGAAGTGGGAACGGGGTCATTTTGAATCCAATTTGTCTGTTGAACAAGGCTTTAACACCTTTGCAGTCGGCAGTTTGGAACTGATTAAGAGACCGCTGCAACAGAAATCTCTCAGGACGGATTCCACAAtatattcttatttttttatcatcaattGATGAACCCCATACAAAGGAAATGTTTGTTTTATAAGTTTGTAAATAATATTCATAGTATTGTTTGTCTGCAATAAATTCTTCATAATATGAATATTTCACACACTAGTCTAGCTAGACATCCATCATATTGGCGACAGAtgttcatgtgaatattctaaaatctgcattgaaacaatatgcacattttcccactaGTGTTTGCCGCAAACAGACTTGTTGCTGATAAAAGTCAGTGCGTGATGACATGGTgtacacaaaatgtacttttttgcTGAAATTTTCAAGTACCAAATAAAATCTAAAGTTTAA

Function

symbol description
paip1 Predicted to enable translation activator activity. Predicted to be involved in regulation of translational initiation. Orthologous to human PAIP1 (poly(A) binding protein interacting protein 1).

NR:

description
polyadenylate-binding protein-interacting protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622033.2 False 3307 mRNA 0.43 11 69544805 69555989
XM_021622034.2 True 3194 mRNA 0.43 10 69544805 69555991

Neighbor

gene id symbol gene type direction distance location
c11h5orf34 cssa20h5orf34 coding downstream 407 69533784 ~ 69544398 (-)
LOC110536305 LOC106580587 coding downstream 12696 69521113 ~ 69532109 (-)
LOC110536304 LOC106585162 coding downstream 24471 69501897 ~ 69520334 (-)
LOC118937381 NA coding downstream 65857 69473936 ~ 69478948 (-)
LOC110536301 NA coding downstream 140599 69400550 ~ 69404206 (-)
LOC110535103 fgf10 coding upstream 3687 69559666 ~ 69573629 (-)
LOC110536308 LOC106580585 coding upstream 25852 69581843 ~ 69627090 (-)
LOC110536312 LOC106580582 coding upstream 103423 69659414 ~ 69665129 (-)
LOC110536311 LOC106580581 coding upstream 110120 69666111 ~ 69674458 (-)
LOC110536316 aebp1 coding upstream 182203 69738194 ~ 69770129 (-)
G1011243 NA non-coding downstream 56379 69487475 ~ 69488426 (-)
G1011248 NA non-coding downstream 89510 69453943 ~ 69455295 (-)
G1011175 NA non-coding downstream 191661 69352905 ~ 69353144 (-)
G1011174 NA non-coding downstream 192761 69351809 ~ 69352044 (-)
G1011587 NA non-coding upstream 78172 69634163 ~ 69634630 (-)
G1011588 NA non-coding upstream 83161 69639152 ~ 69639375 (-)
G1011616 NA non-coding upstream 134902 69690893 ~ 69691189 (-)
G1011618 NA non-coding upstream 138533 69694524 ~ 69694733 (-)
G1011014 NA other downstream 238377 69305336 ~ 69306428 (-)
G1010922 NA other downstream 425319 69116507 ~ 69119486 (-)
G1010443 NA other downstream 856843 68687257 ~ 68687962 (-)
G1009720 NA other downstream 1573477 67971071 ~ 67971328 (-)
G1007506 NA other downstream 3171856 66372642 ~ 66372949 (-)
G1012814 NA other upstream 1328485 70884476 ~ 70890991 (-)
G1013669 NA other upstream 1941317 71497308 ~ 71515434 (-)
G1013960 NA other upstream 2440090 71996081 ~ 71996688 (-)
G1014411 NA other upstream 2803294 72359285 ~ 72359505 (-)
G1014639 NA other upstream 2890663 72446654 ~ 72449340 (-)

Expression


Co-expression Network